mRNA_C-tenellus_contig7799.4.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7799.4.1
Unique NamemRNA_C-tenellus_contig7799.4.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig7799.4.1 vs. uniprot
Match: D7FM87_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FM87_ECTSI)

HSP 1 Score: 163 bits (413), Expect = 6.410e-42
Identity = 131/391 (33.50%), Postives = 168/391 (42.97%), Query Frame = 1 
Query:   85 RFGHILNPADLNVFPTSSAPNVDIHLQRLKALMHRQSAHRTQGCSDVGHVLENEDPRVIHTSQRSGSVLGDNSKLGMKAGLVSCPAVG---------SQARNRRYRRLQQLVEAGEWGSDAAMRDRDPLLWYDLVGRHNGERKPVPGAQSEDFTVGNATVESYLIESLGFLSSTSSGGKGKENGKDNVDRPAGKQGL--------VGAAFLSAFGACSGGGDERVEEIQSTMDIDVDVTENDPTNAFKVQGGLPNGIEQIYTSDDVDT--AAVTEAMAGWELENRRVHWQEEGPLRSL-GKRESQPQSMTGNGGVGVSVDMIAVPSAAGGDNSQQKHQQERTEVELCREGREEVARVMAERFLSGAEAGVDYTAVDGDERLDDLEQLSRDQ 1197
            RFGHIL P DL     S  P V +H+ RLK LM  Q                                                             ++ RNRRYRRLQQL E G W SD AM++RDP LW++ VG+H GE KP P  Q+ +   G+ +V +YL ESLGFLS     G G   G       AG            +G AFLS   A +G  D    E   + D+    +      A  +  G+P+G E+    DDVD   AAVT A+         +  Q++G    + G+R      M  +GG G                                 GREEVAR+++ERFL+G E GVDY +VDGDERLDDL+QLSRD+
Sbjct:   98 RFGHILTPGDLESLLPSQDPAVALHVARLKTLMLSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARVRNRRYRRLQQLAEGGVWFSDEAMKERDPWLWFEYVGKHAGEEKPAP-KQAVEEVPGSTSVGTYLQESLGFLSQKQPNG-GWPTGLPTSGAGAGXXXXXXXXXXTSLGMAFLSGVCADAGARDVAAGETVDSSDVPEAASSQAEVTAVPIASGMPDGRERHACEDDVDARAAAVTAAVGA-------IGLQDDGKKADVDGRRVRFSDEMGSDGGGGXXXXXXXXXXXXXXXXXXXXX----XXXXXXXXGREEVARILSERFLAGLEQGVDYRSVDGDERLDDLDQLSRDE 475
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7799.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FM87_ECTSI6.410e-4233.50Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7799contigC-tenellus_contig7799:3982..6122 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog7213.XP_004531407.1
Preferred nameCCDC97
PFAMsDUF2052
Model size1212
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005686,GO:0030532,GO:0032991,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0097525,GO:0120114,GO:1990904
Exons4
Evalue3.94e-08
EggNOG OGsKOG3044@1|root,KOG3044@2759|Eukaryota,39RMY@33154|Opisthokonta,3BB82@33208|Metazoa,3CW2Q@33213|Bilateria,4207M@6656|Arthropoda,3SN26@50557|Insecta,44ZB0@7147|Diptera
Ec32 ortholog descriptionProtein of unknown function DUF2052, coiled-coil
Ec32 orthologEc-16_004690.1
DescriptionCoiled-coil domain containing protein (DUF2052)
Cds size1212
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790059.1281579-CDS-C-tenellus_contig7799:3981..40641680790059.1281579-CDS-C-tenellus_contig7799:3981..4064Choristocarpus tenellus KU2346CDSC-tenellus_contig7799 3982..4064 +
1680790059.1393204-CDS-C-tenellus_contig7799:4689..51291680790059.1393204-CDS-C-tenellus_contig7799:4689..5129Choristocarpus tenellus KU2346CDSC-tenellus_contig7799 4690..5129 +
1680790059.1492045-CDS-C-tenellus_contig7799:5376..56761680790059.1492045-CDS-C-tenellus_contig7799:5376..5676Choristocarpus tenellus KU2346CDSC-tenellus_contig7799 5377..5676 +
1680790059.1586797-CDS-C-tenellus_contig7799:5733..61221680790059.1586797-CDS-C-tenellus_contig7799:5733..6122Choristocarpus tenellus KU2346CDSC-tenellus_contig7799 5734..6122 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7799.4.1prot_C-tenellus_contig7799.4.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7799 3982..6122 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7799.4.1

>prot_C-tenellus_contig7799.4.1 ID=prot_C-tenellus_contig7799.4.1|Name=mRNA_C-tenellus_contig7799.4.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=404bp
ETAVGEGVSVPLPVLRLEHPQWNETTQRRFGHILNPADLNVFPTSSAPNV
DIHLQRLKALMHRQSAHRTQGCSDVGHVLENEDPRVIHTSQRSGSVLGDN
SKLGMKAGLVSCPAVGSQARNRRYRRLQQLVEAGEWGSDAAMRDRDPLLW
YDLVGRHNGERKPVPGAQSEDFTVGNATVESYLIESLGFLSSTSSGGKGK
ENGKDNVDRPAGKQGLVGAAFLSAFGACSGGGDERVEEIQSTMDIDVDVT
ENDPTNAFKVQGGLPNGIEQIYTSDDVDTAAVTEAMAGWELENRRVHWQE
EGPLRSLGKRESQPQSMTGNGGVGVSVDMIAVPSAAGGDNSQQKHQQERT
EVELCREGREEVARVMAERFLSGAEAGVDYTAVDGDERLDDLEQLSRDQV
GAL*
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mRNA from alignment at C-tenellus_contig7799:3982..6122+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7799.4.1 ID=mRNA_C-tenellus_contig7799.4.1|Name=mRNA_C-tenellus_contig7799.4.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2141bp|location=Sequence derived from alignment at C-tenellus_contig7799:3982..6122+ (Choristocarpus tenellus KU2346)
GAGACGGCAGTTGGCGAGGGTGTCAGCGTGCCGCTGCCTGTGCTAAGGCT
GGAGCACCCTCAATGGAACGAGACAACACAGAGGTGGAGAAAGCTTGCCT
ACGGCTGCTGTCGACTGATCCGGCATCGTTCCTGAGGTTGTTTTTTCTTA
ATGCGGCTGCTTGAGCTGTACGTGCTTGCTAGCGAAATGTGTGATCATGG
ATTGACGCCTGGGAAGAAGGAACCTTGCTGTCACCCCAACATCGACTCAA
GAGTACTGTACTGATGTGCTGTTGCTTTGGCCAACCGTAGACCTCGTGCA
TTTAGTGATATGCTTACCCTTCTATTATCTTTCGTTGAAACAATGACCTA
GTCGAATACATCGTATTCATAGAGTGGAAACTTGAAGGTATCTCACCAAA
CGTGGTTTAAGAGCTGAACCAGCTACATTTTCACGAAATTGTTGAGGTTT
ACTCCCTGAACAATATCCCCGAAATTCTTTAGCTAGTTGATGGAATAGCT
GCATCTCCTGCATCAACATGACGTTTTTGCTGTCCCTAGATTTTAGCAAT
ATGTCACTTTCTCACATTGCACATCAAGGCAACCCCAGATTTAACATACA
CCCAGTGTCGCGCCAGGTATAAGATACTTTTTTTTAATCATCCCTTTTTA
TTGTTTTTCTCATTACCCTACCCTACGCTCTCCTCTGTTGCTCTCACACC
CTGCACAGGAGATTTGGTCACATACTGAACCCAGCAGACCTAAACGTCTT
CCCAACTTCCTCCGCCCCAAATGTAGACATCCACCTGCAACGGCTTAAGG
CCCTCATGCACAGGCAAAGTGCACATCGAACTCAGGGATGTTCCGATGTG
GGCCATGTACTGGAGAATGAAGATCCTCGTGTGATCCACACATCACAGCG
ATCAGGGTCTGTTCTGGGAGACAATAGCAAGCTGGGAATGAAAGCTGGGT
TGGTGAGTTGCCCAGCTGTGGGTTCGCAAGCACGGAACAGGAGATATCGC
CGACTGCAGCAGCTTGTGGAGGCGGGGGAGTGGGGGAGTGATGCAGCGAT
GCGTGATAGGGACCCATTGCTGTGGTACGATCTTGTGGGGAGGCACAATG
GAGAAAGGAAACCAGTGCCTGGTGCTCAAAGTGAAGACTTCACGGTGGGT
TTAGATTATAGGGTTGGGTTGTGCTGATCTAGAGGACACTGCTATGGCAG
GAGCTCTTTTTCGGGTGTGTTTGTTGAGTTTTGTACAAGTGCACACAAAC
CTCGCCATGATTCAGGAACAGAATGAATGCGTATAGGTGTACTCAATCAC
TGTTTTATCTAGTCAAGTCCATCGTCCTCTGATATGCTCATGTCCTGTAA
CCCTAGAAATGCTGCTGTGATAACAATAGGTTCCTGGAAATGGAGGCAAT
GCAACCGTGGAAAGCTATCTTATTGAGAGCTTAGGCTTTCTGTCCTCAAC
CTCTTCAGGAGGAAAAGGAAAAGAGAATGGAAAGGATAACGTTGATAGGC
CTGCGGGAAAACAAGGACTGGTTGGTGCAGCCTTCCTGTCAGCCTTTGGG
GCTTGTTCAGGTGGCGGGGATGAAAGGGTAGAGGAGATACAGTCAACCAT
GGATATTGATGTGGATGTGACTGAAAATGATCCCACAAATGCCTTCAAGG
TACAGGGTGGTCTACCCAATGGTATAGAACAGATATACACCTCTGGTCCA
ACCCAAGCACATGGTGTGGTTGATAGGAATGATCATGATAGCAGTGACTC
AGATGACGTTGATACAGCAGCTGTGACAGAGGCTATGGCAGGATGGGAGC
TTGAGAATAGAAGGGTCCACTGGCAGGAAGAAGGTCCATTGAGATCATTA
GGGAAAAGGGAAAGTCAACCTCAGAGCATGACAGGCAATGGGGGTGTAGG
GGTGTCAGTGGACATGATAGCAGTGCCTTCTGCAGCTGGGGGTGATAACT
CACAGCAGAAGCATCAACAAGAAAGGACAGAGGTGGAATTGTGCAGAGAG
GGGAGGGAGGAAGTAGCCAGGGTAATGGCAGAGCGGTTCTTGAGTGGTGC
AGAGGCTGGAGTGGATTACACAGCTGTGGATGGTGATGAAAGATTGGATG
ATCTGGAACAACTGTCGAGGGATCAGGTTGGTGCCTTGTGA
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Coding sequence (CDS) from alignment at C-tenellus_contig7799:3982..6122+

>mRNA_C-tenellus_contig7799.4.1 ID=mRNA_C-tenellus_contig7799.4.1|Name=mRNA_C-tenellus_contig7799.4.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=1212bp|location=Sequence derived from alignment at C-tenellus_contig7799:3982..6122+ (Choristocarpus tenellus KU2346)
GAGACGGCAGTTGGCGAGGGTGTCAGCGTGCCGCTGCCTGTGCTAAGGCT
GGAGCACCCTCAATGGAACGAGACAACACAGAGGAGATTTGGTCACATAC
TGAACCCAGCAGACCTAAACGTCTTCCCAACTTCCTCCGCCCCAAATGTA
GACATCCACCTGCAACGGCTTAAGGCCCTCATGCACAGGCAAAGTGCACA
TCGAACTCAGGGATGTTCCGATGTGGGCCATGTACTGGAGAATGAAGATC
CTCGTGTGATCCACACATCACAGCGATCAGGGTCTGTTCTGGGAGACAAT
AGCAAGCTGGGAATGAAAGCTGGGTTGGTGAGTTGCCCAGCTGTGGGTTC
GCAAGCACGGAACAGGAGATATCGCCGACTGCAGCAGCTTGTGGAGGCGG
GGGAGTGGGGGAGTGATGCAGCGATGCGTGATAGGGACCCATTGCTGTGG
TACGATCTTGTGGGGAGGCACAATGGAGAAAGGAAACCAGTGCCTGGTGC
TCAAAGTGAAGACTTCACGGTGGGCAATGCAACCGTGGAAAGCTATCTTA
TTGAGAGCTTAGGCTTTCTGTCCTCAACCTCTTCAGGAGGAAAAGGAAAA
GAGAATGGAAAGGATAACGTTGATAGGCCTGCGGGAAAACAAGGACTGGT
TGGTGCAGCCTTCCTGTCAGCCTTTGGGGCTTGTTCAGGTGGCGGGGATG
AAAGGGTAGAGGAGATACAGTCAACCATGGATATTGATGTGGATGTGACT
GAAAATGATCCCACAAATGCCTTCAAGGTACAGGGTGGTCTACCCAATGG
TATAGAACAGATATACACCTCTGATGACGTTGATACAGCAGCTGTGACAG
AGGCTATGGCAGGATGGGAGCTTGAGAATAGAAGGGTCCACTGGCAGGAA
GAAGGTCCATTGAGATCATTAGGGAAAAGGGAAAGTCAACCTCAGAGCAT
GACAGGCAATGGGGGTGTAGGGGTGTCAGTGGACATGATAGCAGTGCCTT
CTGCAGCTGGGGGTGATAACTCACAGCAGAAGCATCAACAAGAAAGGACA
GAGGTGGAATTGTGCAGAGAGGGGAGGGAGGAAGTAGCCAGGGTAATGGC
AGAGCGGTTCTTGAGTGGTGCAGAGGCTGGAGTGGATTACACAGCTGTGG
ATGGTGATGAAAGATTGGATGATCTGGAACAACTGTCGAGGGATCAGGTT
GGTGCCTTGTGA
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