mRNA_C-tenellus_contig7799.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7799.1.1
Unique NamemRNA_C-tenellus_contig7799.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig7799.1.1 vs. uniprot
Match: A0A662WX77_9STRA (Mitochondrial fission process protein 1 n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WX77_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 1.910e-7
Identity = 28/33 (84.85%), Postives = 31/33 (93.94%), Query Frame = 3 
Query:  594 TDIWRDSLLRYLGYANEVGESFRFIAPRVVGPS 692
            TD+WRDSL+RYLGYANEVGESFR IAPR+V PS
Sbjct:    8 TDLWRDSLVRYLGYANEVGESFRPIAPRLVVPS 40
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BLAST of mRNA_C-tenellus_contig7799.1.1 vs. uniprot
Match: A0A6G0XAD6_9STRA (Mitochondrial fission process protein 1 n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XAD6_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 2.770e-7
Identity = 28/45 (62.22%), Postives = 34/45 (75.56%), Query Frame = 3 
Query:  573 ATDVSKGTDIWRDSLLRYLGYANEVGESFRFIAPRVVGPSCSARM 707
            A   SK TD+WRDS +RYLGYANE+GESFR + PR+V PS +  M
Sbjct:   10 AAQASKTTDMWRDSPVRYLGYANELGESFRPLFPRLVAPSYAVAM 54
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BLAST of mRNA_C-tenellus_contig7799.1.1 vs. uniprot
Match: A0A0W8D9G0_PHYNI (Mitochondrial fission process protein 1 n=7 Tax=Phytophthora TaxID=4783 RepID=A0A0W8D9G0_PHYNI)

HSP 1 Score: 58.5 bits (140), Expect = 1.060e-6
Identity = 36/80 (45.00%), Postives = 45/80 (56.25%), Query Frame = 3 
Query:  597 DIWRDSLLRYLGYANEVGESFRFIAPRVVGPSCSARM-----DTCFKCFIVRHNTAQSLESRKGFHQRR*CLVQSLVHLL 821
            DIWRDSL+RYLGYANE+GESFR I PR+V PS          DT  K        A+++E R    +R   +V + V  L
Sbjct:    9 DIWRDSLVRYLGYANELGESFRPIVPRLVVPSYLVAFGYVLGDTFDKATKAH---AKAMEQRVSSRKRNALVVDATVDTL 85
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BLAST of mRNA_C-tenellus_contig7799.1.1 vs. uniprot
Match: A0A6A3XT91_9STRA (Mitochondrial fission process protein 1 n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3XT91_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 1.330e-6
Identity = 34/84 (40.48%), Postives = 45/84 (53.57%), Query Frame = 3 
Query:  594 TDIWRDSLLRYLGYANEVGESFRFIAPRVVGPSCSARMDTCFKCFIVRHNTAQSLESRKGFHQRR*CLVQSLVHLLGTM*KVEW 845
            +DIWRDSL+RYLGYANE+GESFR I PR+V PS              + N A +    +G   R+    +S V    T+  + W
Sbjct:   10 SDIWRDSLVRYLGYANELGESFRPIVPRLVVPSYLVAFGYVLGDTFDKANKAHAKAVAEGVSTRK----RSAVVADATIDTLAW 89
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BLAST of mRNA_C-tenellus_contig7799.1.1 vs. uniprot
Match: G4YFS8_PHYSP (Mitochondrial fission process protein 1 (Fragment) n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YFS8_PHYSP)

HSP 1 Score: 58.2 bits (139), Expect = 1.360e-6
Identity = 27/38 (71.05%), Postives = 31/38 (81.58%), Query Frame = 3 
Query:  579 DVSKGTDIWRDSLLRYLGYANEVGESFRFIAPRVVGPS 692
            D  +  DIWRDSL+RYLGYANE+GESFR I PR+V PS
Sbjct:    1 DQQQEPDIWRDSLVRYLGYANELGESFRPIVPRLVVPS 38
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BLAST of mRNA_C-tenellus_contig7799.1.1 vs. uniprot
Match: D7FM86_ECTSI (Mitochondrial fission process protein 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM86_ECTSI)

HSP 1 Score: 59.7 bits (143), Expect = 1.870e-6
Identity = 34/67 (50.75%), Postives = 40/67 (59.70%), Query Frame = 3 
Query:  558 VIATSATDVSKGT----DIWRDSLLRYLGYANEVGESFRFIAPRVVGPS--------CSARMDTCFK 722
            V+A S    S+G     D+WRDS LRY GYANEVGESFR IAPR+V PS        C   +D  +K
Sbjct:   95 VLAMSTAASSEGNEGHGDVWRDSALRYAGYANEVGESFRNIAPRLVVPSYAVSIAYVCGDTVDKAYK 161
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BLAST of mRNA_C-tenellus_contig7799.1.1 vs. uniprot
Match: A0A2D4CAK2_PYTIN (Mitochondrial fission process protein 1 n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CAK2_PYTIN)

HSP 1 Score: 58.2 bits (139), Expect = 2.090e-6
Identity = 30/43 (69.77%), Postives = 35/43 (81.40%), Query Frame = 3 
Query:  564 ATSATDVSKGTDIWRDSLLRYLGYANEVGESFRFIAPRVVGPS 692
            ATSAT  S   DIWRDSL+RYLGY+NE+GESFR I P++V PS
Sbjct:   10 ATSATQ-SGEQDIWRDSLVRYLGYSNELGESFRPIVPQLVVPS 51
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BLAST of mRNA_C-tenellus_contig7799.1.1 vs. uniprot
Match: A0A329T1M2_9STRA (Mitochondrial fission process protein 1 n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329T1M2_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 3.040e-6
Identity = 26/32 (81.25%), Postives = 29/32 (90.62%), Query Frame = 3 
Query:  597 DIWRDSLLRYLGYANEVGESFRFIAPRVVGPS 692
            DIWRDSL+RYLGYANE+GESFR I PR+V PS
Sbjct:    9 DIWRDSLVRYLGYANELGESFRPIVPRLVVPS 40
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BLAST of mRNA_C-tenellus_contig7799.1.1 vs. uniprot
Match: K3W7W3_GLOUD (Mitochondrial fission process protein 1 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W7W3_GLOUD)

HSP 1 Score: 57.4 bits (137), Expect = 3.650e-6
Identity = 25/32 (78.12%), Postives = 29/32 (90.62%), Query Frame = 3 
Query:  597 DIWRDSLLRYLGYANEVGESFRFIAPRVVGPS 692
            DIWRDSL+RYLGY+NE+GESFR I PR+V PS
Sbjct:   16 DIWRDSLVRYLGYSNELGESFRPIVPRLVAPS 47
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BLAST of mRNA_C-tenellus_contig7799.1.1 vs. uniprot
Match: H3G9A4_PHYRM (Mitochondrial fission process protein 1 n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G9A4_PHYRM)

HSP 1 Score: 57.0 bits (136), Expect = 4.290e-6
Identity = 26/32 (81.25%), Postives = 29/32 (90.62%), Query Frame = 3 
Query:  597 DIWRDSLLRYLGYANEVGESFRFIAPRVVGPS 692
            DIWRDSL+RYLGYANE+GESFR I PR+V PS
Sbjct:    8 DIWRDSLVRYLGYANELGESFRPILPRLVVPS 39
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7799.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
A0A662WX77_9STRA1.910e-784.85Mitochondrial fission process protein 1 n=2 Tax=No... [more]
A0A6G0XAD6_9STRA2.770e-762.22Mitochondrial fission process protein 1 n=1 Tax=Ap... [more]
A0A0W8D9G0_PHYNI1.060e-645.00Mitochondrial fission process protein 1 n=7 Tax=Ph... [more]
A0A6A3XT91_9STRA1.330e-640.48Mitochondrial fission process protein 1 n=4 Tax=Ph... [more]
G4YFS8_PHYSP1.360e-671.05Mitochondrial fission process protein 1 (Fragment)... [more]
D7FM86_ECTSI1.870e-650.75Mitochondrial fission process protein 1 n=1 Tax=Ec... [more]
A0A2D4CAK2_PYTIN2.090e-669.77Mitochondrial fission process protein 1 n=2 Tax=Py... [more]
A0A329T1M2_9STRA3.040e-681.25Mitochondrial fission process protein 1 n=2 Tax=Ph... [more]
K3W7W3_GLOUD3.650e-678.13Mitochondrial fission process protein 1 n=1 Tax=Gl... [more]
H3G9A4_PHYRM4.290e-681.25Mitochondrial fission process protein 1 n=1 Tax=Ph... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7799contigC-tenellus_contig7799:71..3581 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FM86
Preferred nameMTFP1
PFAMsMTP18
Model size1236
Max annot lvl2759|Eukaryota
KEGG koko:K17981
Hectar predicted targeting categoryother localisation
GOsGO:0000266,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006996,GO:0007005,GO:0007006,GO:0008150,GO:0009987,GO:0016020,GO:0016043,GO:0019866,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0048285,GO:0061024,GO:0071840
Exons3
Evalue8.04e-08
EggNOG OGsKOG3945@1|root,KOG3945@2759|Eukaryota
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-07_006480.1
Descriptionmitochondrial fission
Cds size717
COG categoryS
BRITEko00000,ko03029
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790059.0539832-UTR-C-tenellus_contig7799:70..5151680790059.0539832-UTR-C-tenellus_contig7799:70..515Choristocarpus tenellus KU2346UTRC-tenellus_contig7799 71..515 -
1680790059.0948153-UTR-C-tenellus_contig7799:3507..35811680790059.0948153-UTR-C-tenellus_contig7799:3507..3581Choristocarpus tenellus KU2346UTRC-tenellus_contig7799 3508..3581 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790059.0686483-CDS-C-tenellus_contig7799:515..6131680790059.0686483-CDS-C-tenellus_contig7799:515..613Choristocarpus tenellus KU2346CDSC-tenellus_contig7799 516..613 -
1680790059.078698-CDS-C-tenellus_contig7799:1301..14041680790059.078698-CDS-C-tenellus_contig7799:1301..1404Choristocarpus tenellus KU2346CDSC-tenellus_contig7799 1302..1404 -
1680790059.0866356-CDS-C-tenellus_contig7799:2991..35071680790059.0866356-CDS-C-tenellus_contig7799:2991..3507Choristocarpus tenellus KU2346CDSC-tenellus_contig7799 2992..3507 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7799.1.1prot_C-tenellus_contig7799.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7799 516..3507 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7799.1.1

>prot_C-tenellus_contig7799.1.1 ID=prot_C-tenellus_contig7799.1.1|Name=mRNA_C-tenellus_contig7799.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=239bp
MQGKHVQPRFACTYIYTYIPSSLSKVKCDLYWRALGDDKMLDLSTRYFGL
YAYYTQSSQDLPRTSRSSTSIPSSGRNRVSIGYLDHSKISVLSRVCVGRK
WGGYSPVFSPARNIVPYGVGGDIRSGTDHLMLGGGNRTSAMPGCFWPGCF
LFRGRLVEERKVIATSATDVSKGTDIWRDSLLRYLGYANEVGESFRFIAP
RVVGPSCSARMDTCFKCFIVRHNTAQSLESRKGFHQRR*
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mRNA from alignment at C-tenellus_contig7799:71..3581-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7799.1.1 ID=mRNA_C-tenellus_contig7799.1.1|Name=mRNA_C-tenellus_contig7799.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=3511bp|location=Sequence derived from alignment at C-tenellus_contig7799:71..3581- (Choristocarpus tenellus KU2346)
AAGGAAGAGAAAAAGTAGTGTAAGTGATACATGTTGAAAATTCTGAAGGT
GAGGAATGAAGATGGACAAAGTGCATGCAAGGTAAGCACGTGCAACCTCG
TTTTGCATGCACATATATATATACATATATCCCCTCTTCCCTCAGTAAGG
TGAAGTGCGATCTCTATTGGCGAGCGTTGGGTGATGATAAAATGTTAGAC
CTGTCGACCCGATATTTTGGTCTTTATGCTTACTACACCCAGTCTTCTCA
AGATTTACCAAGAACATCTCGCTCCTCAACCAGTATTCCTTCCTCAGGAA
GAAATCGTGTTTCTATCGGGTACCTGGACCACTCGAAGATATCAGTCTTG
TCTCGGGTGTGTGTTGGTAGGAAATGGGGGGGATACTCTCCAGTTTTCTC
CCCTGCCAGGAACATAGTCCCATATGGAGTTGGTGGAGACATCAGGTCGG
GAACGGACCATTTGATGCTGGGGGGTGGAAATAGAACATCAGCCATGCCA
GGATGCTTTTGGCCTGGTTGTTTTCTATTCCGTGGAAGGTTAGTAGAGGA
AAGGAAAGTGATTGCCACGTCTGCAACAGACGTTTCAAAGGTGAGCAGCA
AGACTGATCGTGGGCTTGACCTCAATGTAGCTTGGTAGCGAGCTTGCAGA
TGGGCCATTCCTTGGAGAGTGTTGGATACATACCTCAATCGGGCGGCTCA
AGGGTGACTTGGACTCTCCGTTTATCTTGTGAAAATATTGTTGAAGCCTC
GTGTCGGGTCTATGGCAAATACTTCTACTAACCTGTAATGTAGTTGCCGA
GGCAAACTTCCATTACCTATGACATGTTGTTCTTTCGGTGCGCATCACTA
TATGAACAAACACCGGGAATACTCTGTCAACATTGGAGATGCTGTGTTGT
GCAGTCGATACGCCTCTTGTCGTAAGCGTATTGAAGCATGAAATGCCTCT
AAACTTCTCCTCTTGGACCTATCGAATATTCACTTCCATGTGCTTCTTCA
AGTTGTGATTGCTACTTCACAGAAGAGCATGCGCTACAAGTGATGCGAAA
TTGTACAGGAACGTTTTTAATGATACTTCCCCCTCAACCATGCATATTTA
TTCCCTGATCATGTTACTCAGGACTTACCACCAGACCGCGCAATTCTGAC
AGGGTTGGTCCAGGAACTTGCAAAACTCTAATATGCCTGGTCTGCGTCTA
CCCTTGTTTGAACAGATCCATGGATAAAATGTGTATTGTTCAGTGTGTTC
AAAATCTGACGTAGATGTTAAATAAGGTCTACATGATGTAGGATGTATGA
AGGTCTGTGTAGTGTAGGATGGACCTCTCAAGAGAATGCGTAAAAATCCC
TGTCAAAGGGTAAAAGACTCCTATTTGTTTTTGTTAGTTTTCTTAAGCAC
GGGTTGTGTGTGTTAGGGTTAGGGTTAGAGTGTGTGCAGTAGAGTGTGTG
CGTTATTATTGACCTTGTGCTGATGTAGTCATGGTTACTGCCTGACTCAT
CCACATACTTGTGTTTAGGTGGGAAGACAACCCGACTTGACCTACATTAA
TGTATGCATTGGAGGGTAACCTCAATGCATTGGAGGGTAACCTCGATCAT
GTACGATGTTTTCTTGTATTCATGTACGATATTTTCTTGTATTCATGTAC
GATTCGGAATGTGATACTTGTAATGCGAAGCTGGATGGATTCTTTGTACG
TATTGTTTCAGAAAGTAGATGCAGGCAATACGGGTTTCTGGAGCTGCGAT
ATTGCAACCTTATGCCTTGAAGTGGTACACGAGCACATCAGATCTCTATT
GAATTATCTCAGTAGTTGAACAGCAGATTCGATACCCTACAAACTAAGCA
ATTATTTATTGAATTGATCATCATATTATTTATTGAATTGATGGGGAGGG
GTGTCCAGCCCTGTGTTTTTTTAAGTGTTTCTCACAGGAAAAAAAAGAAA
AGAAAAAAATGACCGTCAGAAAAAAATGAGAAATTTTTACAGGGGGCGAT
CGGCAGGCAGGGGCAGGGGCAGGTCCATGGGCATGGTGCAGTCATCAGCC
CGGTCAACTTCCTGATCTGGTTCAAGGCCCTGGTAGTGCTACAATATTGA
AATGCTGAACTGTTGAAGTATGCGTGCTTCATATTCCTTACGGGTTTTGT
TGTGCTTTACCATTCATTGACTTCAAGGGGACAGATATTTGGCGTGACTC
TTTGCTCCGGTATCTGGGTTATGCTAACGAGGTGGGGGAGAGCTTCCGAT
TCATTGCCCCGCGTGTGGTAGGACCATCATGTGAGTTGCCAAGAGCGTTG
TCATGCAGGTATTTGATTTTGTTGAACCAAATGACTGAATGGCTTTCTAC
AAGGTGCAGAAAAGGTTGTGTTGTCTGATGGACAAAGATGGTGCTCGCTG
TAGATCACTTCCATGTAGTACCTTTTTACTACTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTCGGAGTTCTAGGGCTCTAGTGATATTGCATAGCCTCAAGCAAGTAT
TTTGTATTCTTTTGATCAGGATAATCTTTTATATAATCTCTAACGTATGC
TGTTGAAGTGCTTTTCGGTCTTGAAGCAGGCAAAGTGAGAGGCAGGCCCA
TCTTCCCCTTACTGTGGAAGTATTGAATGTTGGTACTGAATGTTGGTACT
GAGTGTTGGTACTGATTGTTGGTACTGAATGTTGGTACTGAGTGTTGGTA
CGATTGTTGGTACTGAATGTTGGTACTGATTGTTGGTACGGAATGTTGGT
ATGGAATGTTGGTACTGAATGTTAGTACTGATTGTTGGTACCAAATGTCG
GTACTGAGTGTTAGTACTGAATGTTGGTACTGAATGTCAGGAACCACTGC
ACACATCCCAAGAATGTCTATTGTAGGACAGCGATTGACTTATTGTTGGA
GTATCTGAACGGTTTTAGGTTCTGCGAGGATGGACACTTGTTTCAAGTGC
TTCATTGTGAGGCATAACACAGCTCAATCTTTGGAGTCAAGGAAGGGGTT
CCACCAGAGGAGATAATGTTTGGTTCAGTCTTTGGTTCACCTTCTCGGGA
CCATGTAAAAAGTCGAATGGTAGCTCTAGGTGATCTGAACATGGGCAAGA
GGGTGTGCACTCTGTCTCTGATTGTAAGAGATGTTTGGTTTAACACGGGC
AATAAATGTTTGACGTACTGTTAAATCTTTCCATGTCAAGCGATCAAAAA
ACATTTTTGGACCTACAAGATGGTACAAGTAACTGCACATAATTTATAAT
TAGTAATGGGTGAAACTTGTATGTGGTATTTGAGTTTTTGACTAAACTGA
AACCCTATTTTGAAAGCTGATTGGTGTGCAGCAGGTTGGAGATCAGTGCC
AACTGTGTTGAGACTTTTGGCATGAGCAGTGTTTCATGTCGGGCTGAATA
TTTGATTCTAAACAGGACACTCTATGGACACATTTTGCCACCCCCCTGTT
GCTCCCTCCCT
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Coding sequence (CDS) from alignment at C-tenellus_contig7799:71..3581-

>mRNA_C-tenellus_contig7799.1.1 ID=mRNA_C-tenellus_contig7799.1.1|Name=mRNA_C-tenellus_contig7799.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=717bp|location=Sequence derived from alignment at C-tenellus_contig7799:71..3581- (Choristocarpus tenellus KU2346)
ATGCAAGGTAAGCACGTGCAACCTCGTTTTGCATGCACATATATATATAC
ATATATCCCCTCTTCCCTCAGTAAGGTGAAGTGCGATCTCTATTGGCGAG
CGTTGGGTGATGATAAAATGTTAGACCTGTCGACCCGATATTTTGGTCTT
TATGCTTACTACACCCAGTCTTCTCAAGATTTACCAAGAACATCTCGCTC
CTCAACCAGTATTCCTTCCTCAGGAAGAAATCGTGTTTCTATCGGGTACC
TGGACCACTCGAAGATATCAGTCTTGTCTCGGGTGTGTGTTGGTAGGAAA
TGGGGGGGATACTCTCCAGTTTTCTCCCCTGCCAGGAACATAGTCCCATA
TGGAGTTGGTGGAGACATCAGGTCGGGAACGGACCATTTGATGCTGGGGG
GTGGAAATAGAACATCAGCCATGCCAGGATGCTTTTGGCCTGGTTGTTTT
CTATTCCGTGGAAGGTTAGTAGAGGAAAGGAAAGTGATTGCCACGTCTGC
AACAGACGTTTCAAAGGGGACAGATATTTGGCGTGACTCTTTGCTCCGGT
ATCTGGGTTATGCTAACGAGGTGGGGGAGAGCTTCCGATTCATTGCCCCG
CGTGTGGTAGGACCATCATGTTCTGCGAGGATGGACACTTGTTTCAAGTG
CTTCATTGTGAGGCATAACACAGCTCAATCTTTGGAGTCAAGGAAGGGGT
TCCACCAGAGGAGATAA
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