mRNA_C-tenellus_contig7793.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7793.2.1
Unique NamemRNA_C-tenellus_contig7793.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig7793.2.1 vs. uniprot
Match: D7FT18_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT18_ECTSI)

HSP 1 Score: 110 bits (274), Expect = 2.920e-24
Identity = 57/128 (44.53%), Postives = 85/128 (66.41%), Query Frame = 3 
Query:  483 FPSDRLIKASVVQL-KEGIIVEPSQATTRRNKKRNVPQTYGITWKIQNENEDGESITVPMTKYGLGKRVPRKQVAEIMKYVRDQTQELDIEEKRWFSSVGIVCMVFGVLLLLMRVAVGDLRTNPTPQR 863
            F  + L+KA V  L K+G +V   +A+ R+  KR + QTY +TWK   + E  +  T+P+  YGLG++VPR +VA IM+YV+ Q  +LD++E RWF+ +GIVC VFG +L+L+RV VG +   P  +R
Sbjct:   39 FLRESLVKAEVAHLDKKGELVRGKRASRRQ--KRGMAQTYTVTWK---DAETQDETTLPIASYGLGRKVPRAKVARIMQYVQRQIDDLDVKEGRWFTGIGIVCFVFGGVLILLRVVVGSIFPQPPSRR 161
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BLAST of mRNA_C-tenellus_contig7793.2.1 vs. uniprot
Match: A0A6H5L4Y3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4Y3_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 1.400e-23
Identity = 57/128 (44.53%), Postives = 84/128 (65.62%), Query Frame = 3 
Query:  483 FPSDRLIKASVVQL-KEGIIVEPSQATTRRNKKRNVPQTYGITWKIQNENEDGESITVPMTKYGLGKRVPRKQVAEIMKYVRDQTQELDIEEKRWFSSVGIVCMVFGVLLLLMRVAVGDLRTNPTPQR 863
            F  + L+KA V  L K G +V   +A+ R+  KR + QTY +TWK   + E  +  T+P+  YGLG++VPR +VA IM+YV+ Q  +LD++E RWF+ +GIVC VFG +L+L+RV VG +   P  +R
Sbjct:   87 FLRESLVKAEVAHLDKNGELVRGKRASRRQ--KRGMAQTYTVTWK---DAETQDETTLPIASYGLGRKVPRAKVARIMQYVQRQIDDLDVKEGRWFTGIGIVCFVFGGVLILLRVVVGSIFPQPPSRR 209
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BLAST of mRNA_C-tenellus_contig7793.2.1 vs. uniprot
Match: A0A835YLB3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLB3_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 1.080e-19
Identity = 50/122 (40.98%), Postives = 79/122 (64.75%), Query Frame = 3 
Query:  483 FPSDRLIKASVVQLKEGIIVEPSQATTRRNKKRNVPQTYGITWKIQNENEDGESITVPMTKYGLGKRVPRKQVAEIMKYVRDQTQELDIEEKRWFSSVGIVCMVFGVLLLLMRVAVGDLRTN 848
            FP   L+ A +V+L +G IV+P+  +  R K+R    +Y I W     +   ++   PM+  GLG++VPR +V EIMKY++ +  E+D+ + R+ S VG++C +FGVLLLLMR AVG+L ++
Sbjct:   64 FPRVNLMSAELVRLYQGEIVDPTSLS--RQKRRTTASSYAIKWL----DAQRQTHMRPMSSRGLGRQVPRSRVQEIMKYIKREIHEVDVSQARYTSGVGLICCIFGVLLLLMRAAVGNLSSS 179
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7793.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FT18_ECTSI2.920e-2444.53Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L4Y3_9PHAE1.400e-2344.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YLB3_9STRA1.080e-1940.98Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7793contigC-tenellus_contig7793:1829..4080 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2008
Hectar predicted targeting categorysignal anchor
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-04_002430.1
Cds size240
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790058.9352384-UTR-C-tenellus_contig7793:1828..29401680790058.9352384-UTR-C-tenellus_contig7793:1828..2940Choristocarpus tenellus KU2346UTRC-tenellus_contig7793 1829..2940 -
1680790058.9754908-UTR-C-tenellus_contig7793:3424..40801680790058.9754908-UTR-C-tenellus_contig7793:3424..4080Choristocarpus tenellus KU2346UTRC-tenellus_contig7793 3425..4080 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790058.9460711-CDS-C-tenellus_contig7793:2940..31531680790058.9460711-CDS-C-tenellus_contig7793:2940..3153Choristocarpus tenellus KU2346CDSC-tenellus_contig7793 2941..3153 -
1680790058.9630663-CDS-C-tenellus_contig7793:3397..34241680790058.9630663-CDS-C-tenellus_contig7793:3397..3424Choristocarpus tenellus KU2346CDSC-tenellus_contig7793 3398..3424 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7793.2.1prot_C-tenellus_contig7793.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7793 2941..3424 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7793.2.1

>prot_C-tenellus_contig7793.2.1 ID=prot_C-tenellus_contig7793.2.1|Name=mRNA_C-tenellus_contig7793.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=80bp
MTKYGLGKRVPRKQVAEIMKYVRDQTQELDIEEKRWFSSVGIVCMVFGVL
LLLMRVAVGDLRTNPTPQRTRRAVRRQPR*
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mRNA from alignment at C-tenellus_contig7793:1829..4080-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7793.2.1 ID=mRNA_C-tenellus_contig7793.2.1|Name=mRNA_C-tenellus_contig7793.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2252bp|location=Sequence derived from alignment at C-tenellus_contig7793:1829..4080- (Choristocarpus tenellus KU2346)
ACACCAGATCTGCACAACACCATCAAGGAATACAGAGGAAATGCTTCGGC
GCAGGGGTGGTGATCTGCCGTTGGCTTCAGGAGGTAGAACCCCCCCTCGT
GAACTGCGGCAGATAAACTTACCAAAGTTCACAGTGGTGGACTTCTTCTC
TTGGGGATGGACATTGATTGGTATCGTCACCATTCTCTTTGGCATCAGGC
ATTGCTCCAATAACAGCGTCCTCTCGCGTTTTCATTGTGCCAAGGGGGTA
TGTAGCTTGCGCCAGGAGAGCGGTGGTATTCCGCAGTGAGTATTCTGGTG
CTCTGCTTGCCGTGCTATCTTGCACTACCCTATCAACCATCCTATGACCT
CTGCATATACCTGAAGTGGCACAGGGAACTTTTTGGTGATGACTCCGTAC
TGGTCACAAATTGGACGTTTCTTTTGCCAACCAGTGACGCGAAGCCCTCT
CTGATCACGCCGCCCTCAGGACCTATGACACATTCCCAAGCGATCGTCTC
ATCAAGGCTTCAGTGGTACAGCTCAAAGAGGGGATTATTGTCGAACCGTC
TCAGGCCACGACTCGACGCAACAAGAAGCGAAACGTTCCGCAAACATACG
GCATCACGTGGAAGATTCAGAACGAGAATGAAGATGGAGAAAGTATTACC
GTTCCCATGACTAAATATGGTTTGGGAAAGAGGGTGAGTTTTTAATCCTG
ACTACGTCAACCCCTTTGGAAATGTCCTAGATGGGCAAGAAGTTGGATAA
AAATACCCACCCCAGATATCATATTACCCTTGACTTGAGACTGAAATAGC
AGTTCGTATCTTCGTGACAGCGCTTAGAAAATGCGAAGCTGTTTTTACCG
GCACACATCAACTTTGCTAAACATGGTCTGCGATTAGTTGGTCAATTCAC
CAATTCTTTGACTACTTTGTCATGCAGGTACCGCGTAAGCAGGTGGCGGA
AATAATGAAATATGTTAGAGATCAAACACAAGAGCTGGATATCGAGGAAA
AGAGATGGTTCAGCAGCGTTGGCATTGTCTGCATGGTATTTGGAGTACTG
TTATTGTTAATGAGGGTAGCTGTTGGAGACTTAAGGACAAACCCAACACC
ACAAAGAACGAGGCGGGCAGTCAGAAGACAGCCGAGGTAAGCTCTTGATG
CCTTGCGTGATTGAAAGGATGATGGTCTGTAGTGTAAAGAAAATCCTTTC
TATTTTTCGTACAATTTTCATATATACAACAATGGTTCCCCCGTCTGATC
GGGCTGGTGGCATTGCCTCTAAAGTTCCAGTCAAGCTTTGCTAGGAAGTT
CAGTGGCAAACTGATTTTCTGAAGGAGAGAGTGGCTTGCTGGCCCCACTT
GTTGGGTATTTCCAACACAGAATTTGTTCTGATGGCCTATGTACACTAGA
TGCACTTCACAGGTTAACCCTTTTTATGCATGTGGGTTTCAATTCATGAT
TGAAGGGGTGTGTGACAATGTACAAGACAATAGATGAACCAGTCGTGTAC
ATGATGCTCTAAAAGCATGACCGTCTACCTCACTAGACATGATGAGGTAG
CATATTGGAATATAAAATTTGAGGACAAAAGCACACACATACACCTTCCT
TATCCATCTACAACACAAATGTTGTGTCAAAGGAAGAAAGAGAGTGTTTT
CGACTTTTTACTTGATTTGATCATTCTGTACACCTCCACTATGTCGCTGA
CACTCTGTGGTCATGTTGACAACTTCCAGCCCATAATCTCCCCAACGATT
ATAGAATCACACGAGTATACAGTGTATGTTGGAGGAAGGAGTTGAGAATA
ATGGAAGTGGAGGAATGGGTTAGTCAGATATTTGGAAACAATTTATGTTG
CACTCTCAAGCATCACATTGGGTAGATATCCACTGTGGGGTGTGGGAACT
GTTTACAGCACGGTGCAAGGTGTATTGGTACGTGGAAGGAGATGGCAACG
AGTAGATTGTTGAGACAGGCAAAGTATACCTTTGAATGGTAGTTCTACAT
CTCAATTCTTCAATGTTCAACGGATGTAAGCGAAATGGGATGCAGTTTCT
TGTCCTTCTATTTGTTTATTTTGTGGCACTTAGGATTAGTGTAGTACCAC
AGACAGTTTGTATCTTTTGTGTATGATTTTCAGAATGGTAACCGCAGTGG
CATGTTTTTAATATATTATATTTTATAGAAATGGCATCTACAGTGCACAT
CTTTGAAGTCAGGATGAACGTGCCGACACCCATACACATAAGATCAAAGG
AC
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Coding sequence (CDS) from alignment at C-tenellus_contig7793:1829..4080-

>mRNA_C-tenellus_contig7793.2.1 ID=mRNA_C-tenellus_contig7793.2.1|Name=mRNA_C-tenellus_contig7793.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=240bp|location=Sequence derived from alignment at C-tenellus_contig7793:1829..4080- (Choristocarpus tenellus KU2346)
ATGACTAAATATGGTTTGGGAAAGAGGGTACCGCGTAAGCAGGTGGCGGA
AATAATGAAATATGTTAGAGATCAAACACAAGAGCTGGATATCGAGGAAA
AGAGATGGTTCAGCAGCGTTGGCATTGTCTGCATGGTATTTGGAGTACTG
TTATTGTTAATGAGGGTAGCTGTTGGAGACTTAAGGACAAACCCAACACC
ACAAAGAACGAGGCGGGCAGTCAGAAGACAGCCGAGGTAA
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