mRNA_C-tenellus_contig778.6.1 (mRNA) Choristocarpus tenellus KU2346
Overview
Homology
BLAST of mRNA_C-tenellus_contig778.6.1 vs. uniprot
Match: D8LPP6_ECTSI (AP complex subunit sigma n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPP6_ECTSI) HSP 1 Score: 278 bits (711), Expect = 3.550e-94 Identity = 136/156 (87.18%), Postives = 149/156 (95.51%), Query Frame = 1 Query: 1 MIKFVLMVNKMGQTRISSYYEWMSIPERVALEAEVVRRCFARSELQCSFFEFRGYKIVYRRYASLFFIVGVGVESDDENELGVLEFIHCLVETLDKYFQSVCELDIMFNLEKTHFMLDEMVLNGYICEGNQDNVLKHMQLLDKVAN-GESGFGSKS 465 MIKFVLMVNKMGQTR+SSYY+WM IPERVALEAEVVRRCF+RSELQCSFFEFRGYKI+YRRYASLFFIVGVGV+SDDENELGVLEFIHCLVETLDKYFQSVCELDIMFNLEKTHF+LDEMVLNGYICEGN++NVLK + L+D ++ G+S FGSKS Sbjct: 1 MIKFVLMVNKMGQTRVSSYYDWMPIPERVALEAEVVRRCFSRSELQCSFFEFRGYKIIYRRYASLFFIVGVGVDSDDENELGVLEFIHCLVETLDKYFQSVCELDIMFNLEKTHFILDEMVLNGYICEGNRENVLKPLLLMDSSSHAGDSVFGSKS 156
BLAST of mRNA_C-tenellus_contig778.6.1 vs. uniprot
Match: A0A835Z9B6_9STRA (AP complex subunit sigma n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9B6_9STRA) HSP 1 Score: 271 bits (694), Expect = 1.340e-91 Identity = 133/157 (84.71%), Postives = 148/157 (94.27%), Query Frame = 1 Query: 1 MIKFVLMVNKMGQTRISSYYEWMSIPERVALEAEVVRRCFARSELQCSFFEFRGYKIVYRRYASLFFIVGVGVESDDENELGVLEFIHCLVETLDKYFQSVCELDIMFNLEKTHFMLDEMVLNGYICEGNQDNVLKHMQLLDKV-ANGESGFGSKSL 468 MIKFVLMVNKMGQTR+SSYYEW+ IPERVALEAEVVRRCF+RSELQCSFFEFRGYKI+YRRYASLFFIVGV SD+ENELG+LEFIHCLVETLDKYFQSVCELDIMFNLEKTHF+LDEMV+NG +CE N+DN+LK +QL+DKV AN ++GFGSKSL Sbjct: 1 MIKFVLMVNKMGQTRVSSYYEWLPIPERVALEAEVVRRCFSRSELQCSFFEFRGYKIIYRRYASLFFIVGVD-SSDEENELGMLEFIHCLVETLDKYFQSVCELDIMFNLEKTHFILDEMVMNGCVCEANRDNILKPLQLMDKVSANDDAGFGSKSL 156
BLAST of mRNA_C-tenellus_contig778.6.1 vs. uniprot
Match: A0A7S2UUI5_9STRA (AP complex subunit sigma n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UUI5_9STRA) HSP 1 Score: 234 bits (596), Expect = 1.010e-76 Identity = 109/154 (70.78%), Postives = 135/154 (87.66%), Query Frame = 1 Query: 1 MIKFVLMVNKMGQTRISSYYEWMSIPERVALEAEVVRRCFARSELQCSFFEFRGYKIVYRRYASLFFIVGVGVESDDENELGVLEFIHCLVETLDKYFQSVCELDIMFNLEKTHFMLDEMVLNGYICEGNQDNVLKHMQLLDKVANGESGFGSK 462 MIKF+LMVNK GQTR+SSY+EWM+IPERVALE+E++R+C +R+E QCSF E+RGY+++YRRYASLFFIVGVG +D+ENELGVLEFIH LVETLDKYF+SVCELDIMFN+EK HF+LDEMV+NGYI E N+ N+LK + +DK+AN E S+ Sbjct: 1 MIKFILMVNKQGQTRLSSYFEWMTIPERVALESEIIRKCLSRAEYQCSFLEYRGYRVIYRRYASLFFIVGVG--ADEENELGVLEFIHSLVETLDKYFESVCELDIMFNMEKAHFILDEMVMNGYIMETNRTNILKPIAQMDKMANSEDSIFSR 152
BLAST of mRNA_C-tenellus_contig778.6.1 vs. uniprot
Match: A0A2R5GZ26_9STRA (AP complex subunit sigma n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GZ26_9STRA) HSP 1 Score: 219 bits (558), Expect = 4.740e-71 Identity = 105/145 (72.41%), Postives = 126/145 (86.90%), Query Frame = 1 Query: 1 MIKFVLMVNKMGQTRISSYYEWMSIPERVALEAEVVRRCFARSELQCSFFEFRGYKIVYRRYASLFFIVGVGVESDDENELGVLEFIHCLVETLDKYFQSVCELDIMFNLEKTHFMLDEMVLNGYICEGNQDNVLKHMQLLDKVA 435 MIKFVLMVNK GQTR+SSYYEW++I ER ALEAE++R+C AR+E QCSF E RGYK+VYRRYASLFFIVGV + D+ENELG+LEFIHCLVETLDKYF +VCELDIMFNLEK HF+L+EMV NG++ E N+ NVLK + +LD ++ Sbjct: 1 MIKFVLMVNKQGQTRLSSYYEWLTIEERGALEAEIIRKCLARTENQCSFMENRGYKVVYRRYASLFFIVGV--DQDEENELGILEFIHCLVETLDKYFSNVCELDIMFNLEKAHFILNEMVQNGHVVEANKANVLKPITMLDSIS 143
BLAST of mRNA_C-tenellus_contig778.6.1 vs. uniprot
Match: A0A7S3ZZG7_9STRA (AP complex subunit sigma n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZZG7_9STRA) HSP 1 Score: 219 bits (557), Expect = 8.490e-71 Identity = 104/144 (72.22%), Postives = 126/144 (87.50%), Query Frame = 1 Query: 4 IKFVLMVNKMGQTRISSYYEWMSIPERVALEAEVVRRCFARSELQCSFFEFRGYKIVYRRYASLFFIVGVGVESDDENELGVLEFIHCLVETLDKYFQSVCELDIMFNLEKTHFMLDEMVLNGYICEGNQDNVLKHMQLLDKVA 435 IKFVLMVNK GQTR+S+YYEW+S+PERVALEAE++R C +RSE QCSF E+RGYK+VYRRYASLFFIVGV + D ENELG+LEFIH LVETLDKYF+SVCELDIMFNLEK HF+LDEMV++G + E N+ N+LK + L++K + Sbjct: 3 IKFVLMVNKQGQTRLSTYYEWLSMPERVALEAEIIRTCLSRSEFQCSFVEYRGYKVVYRRYASLFFIVGV--DQDGENELGILEFIHALVETLDKYFESVCELDIMFNLEKAHFILDEMVVDGCVVETNKVNILKPIALMEKAS 144
BLAST of mRNA_C-tenellus_contig778.6.1 vs. uniprot
Match: F0Y567_AURAN (AP complex subunit sigma n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y567_AURAN) HSP 1 Score: 218 bits (556), Expect = 1.250e-70 Identity = 103/144 (71.53%), Postives = 125/144 (86.81%), Query Frame = 1 Query: 4 IKFVLMVNKMGQTRISSYYEWMSIPERVALEAEVVRRCFARSELQCSFFEFRGYKIVYRRYASLFFIVGVGVESDDENELGVLEFIHCLVETLDKYFQSVCELDIMFNLEKTHFMLDEMVLNGYICEGNQDNVLKHMQLLDKVA 435 I+F+LMVNK GQTR+S+YYEW+ +PERVALE+E++R+C +RSE QCSF E+RGYK+VYRRYASLFFIVG E D ENELG+LEFIH LVETLDKYF+SVCELDIMFNLEK HF+LDEMV+NG I E N+ NVLK + L++K + Sbjct: 3 IRFILMVNKQGQTRLSTYYEWLPMPERVALESEIIRKCLSRSEFQCSFVEYRGYKVVYRRYASLFFIVGC--EQDSENELGILEFIHALVETLDKYFESVCELDIMFNLEKAHFILDEMVMNGCIVETNKANVLKPIALMEKAS 144
BLAST of mRNA_C-tenellus_contig778.6.1 vs. uniprot
Match: W7U353_9STRA (AP complex subunit sigma n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U353_9STRA) HSP 1 Score: 216 bits (549), Expect = 2.460e-69 Identity = 105/168 (62.50%), Postives = 130/168 (77.38%), Query Frame = 1 Query: 1 MIKFVLMVNKMGQTRISSYYEWMSIPERVALEAEVVRRCFARSELQCSFFEFRGYKIVYRRYASLFFIVGVGVESDD--------------ENELGVLEFIHCLVETLDKYFQSVCELDIMFNLEKTHFMLDEMVLNGYICEGNQDNVLKHMQLLDKVANGESGFGSK 462 MI+F+L VNK GQTR+SSYY WMSIPERVALEAE++R+C +RSELQC F E+RG+K++YRRYASLFFIVGV E DD ENEL +LEFIH LVETLDKYF+SVCELDIMFNLEK HF++DEMV+NG+I + N+ N+LK + L++K + E S+ Sbjct: 1 MIRFILFVNKQGQTRLSSYYTWMSIPERVALEAEIIRKCLSRSELQCQFIEYRGHKVIYRRYASLFFIVGV--EGDDATGSAHSVSTNGGCENELAILEFIHALVETLDKYFESVCELDIMFNLEKAHFIVDEMVINGHIVDANKTNILKPIHLMEKASASEESIFSR 166
BLAST of mRNA_C-tenellus_contig778.6.1 vs. uniprot
Match: A0A7S3GXI4_9STRA (AP complex subunit sigma n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GXI4_9STRA) HSP 1 Score: 214 bits (544), Expect = 8.370e-69 Identity = 99/154 (64.29%), Postives = 130/154 (84.42%), Query Frame = 1 Query: 1 MIKFVLMVNKMGQTRISSYYEWMSIPERVALEAEVVRRCFARSELQCSFFEFRGYKIVYRRYASLFFIVGVGVESDDENELGVLEFIHCLVETLDKYFQSVCELDIMFNLEKTHFMLDEMVLNGYICEGNQDNVLKHMQLLDKVANGESGFGSK 462 MIKFVLMVNK GQTR++SY++W I ERVALEAE++RRC +R+E QCSF E+RG+K+VYRRYASLFF+V V + ++ENEL +LEFIH LVET+DKYF+SVCELDIMF++EK H+++DEMV+NG I E N+ N+LK + L+DK+A+ E G S+ Sbjct: 1 MIKFVLMVNKQGQTRLASYFQWYPIQERVALEAEIIRRCLSRTEFQCSFIEYRGFKVVYRRYASLFFVVAV--DGEEENELAILEFIHSLVETMDKYFESVCELDIMFHIEKAHYIVDEMVVNGSIVENNKVNILKPLALMDKLASAEGGIFSR 152
BLAST of mRNA_C-tenellus_contig778.6.1 vs. uniprot
Match: A0A7S2FA09_9STRA (AP complex subunit sigma n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FA09_9STRA) HSP 1 Score: 212 bits (540), Expect = 6.560e-68 Identity = 105/154 (68.18%), Postives = 129/154 (83.77%), Query Frame = 1 Query: 1 MIKFVLMVNKMGQTRISSYYEWMSIPERVALEAEVVRRCFARSELQCSFFEFRGYKIVYRRYASLFFIVGVGVESDDENELGVLEFIHCLVETLDKYFQSVCELDIMFNLEKTHFMLDEMVLNGYICEGNQDNVLKHMQLLDKVANGESGFGSK 462 M+KFVLMVNK GQTR+SSYYEW+ + ER ALEAE++R+C +R+E QCSF E+RGYK++YRRYASLFFIVG+ D+ NELGVLEFIH LVETLDKYF+SVCELDIMFNLEK HF+L+EMV NG I E N+ N+LK + L++K A+ +S F SK Sbjct: 20 MLKFVLMVNKQGQTRLSSYYEWIPMQERCALEAEIIRKCLSRNETQCSFVEYRGYKVIYRRYASLFFIVGM---KDNMNELGVLEFIHALVETLDKYFESVCELDIMFNLEKAHFILEEMVQNGCIFETNKANILKPIMLMEK-ASDDSVFSSK 169
BLAST of mRNA_C-tenellus_contig778.6.1 vs. uniprot
Match: F0W0A7_9STRA (AP complex subunit sigma n=21 Tax=Oomycota TaxID=4762 RepID=F0W0A7_9STRA) HSP 1 Score: 210 bits (534), Expect = 2.140e-67 Identity = 100/143 (69.93%), Postives = 124/143 (86.71%), Query Frame = 1 Query: 1 MIKFVLMVNKMGQTRISSYYEWMSIPERVALEAEVVRRCFARSELQCSFFEFRGYKIVYRRYASLFFIVGVGVESDDENELGVLEFIHCLVETLDKYFQSVCELDIMFNLEKTHFMLDEMVLNGYICEGNQDNVLKHMQLLDK 429 MIKFVLMVNK GQTR++ YY+++SI ERVALEAE++R+C +R+E QCSF E+RGYK++YRRYASLFFIVGV D ENELG+LEFIH LVET+DKYF+SVCELDIMFNLEK HF+LDEMV+NG I E N+ ++LK + L++K Sbjct: 1 MIKFVLMVNKQGQTRLAQYYDFLSIQERVALEAEIIRKCLSRNENQCSFVEYRGYKVIYRRYASLFFIVGVQ-NDDSENELGILEFIHALVETMDKYFESVCELDIMFNLEKAHFILDEMVMNGSIVESNKVSILKPIHLMEK 142 The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig778.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-tenellus_contig778.6.1 >prot_C-tenellus_contig778.6.1 ID=prot_C-tenellus_contig778.6.1|Name=mRNA_C-tenellus_contig778.6.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=157bp MIKFVLMVNKMGQTRISSYYEWMSIPERVALEAEVVRRCFARSELQCSFFback to top mRNA from alignment at C-tenellus_contig778:13899..14767+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-tenellus_contig778.6.1 ID=mRNA_C-tenellus_contig778.6.1|Name=mRNA_C-tenellus_contig778.6.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=869bp|location=Sequence derived from alignment at C-tenellus_contig778:13899..14767+ (Choristocarpus tenellus KU2346)back to top Coding sequence (CDS) from alignment at C-tenellus_contig778:13899..14767+ >mRNA_C-tenellus_contig778.6.1 ID=mRNA_C-tenellus_contig778.6.1|Name=mRNA_C-tenellus_contig778.6.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=471bp|location=Sequence derived from alignment at C-tenellus_contig778:13899..14767+ (Choristocarpus tenellus KU2346)back to top |