mRNA_C-tenellus_contig7761.1.2 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7761.1.2
Unique NamemRNA_C-tenellus_contig7761.1.2
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
[Close]
BLAST of mRNA_C-tenellus_contig7761.1.2 vs. uniprot
Match: D7FR34_ECTSI (4HBT domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FR34_ECTSI)

HSP 1 Score: 168 bits (425), Expect = 1.070e-43
Identity = 81/157 (51.59%), Postives = 113/157 (71.97%), Query Frame = 2 
Query:  794 ETDKKPRRQTLYNVDDELKKFPDIMKGNAFHETLNGEHTIFCPYFLIKREGDG-GLQSVVRFGPAVQGYPRLVHGGVTALTFDQLFGWALFFRDITNAFTAYLKVDYKMPIPCETIGVVDVSVYCTEGRKIFLRGSLQSLDGTITYAMADALFVMPK 1261
            E D  P    +++VD  L K P +   NAFH+TLN +  I CP+ L + + DG G+++VVRFG ++ G+P++VHGGVTALTFD LFG ALF ++    FTAY+KVD+K P+PC T  VVD++V   EGRK+++ G L+SLDGT+T++ A+ALFV PK
Sbjct:   82 EGDTVPLPPNVHDVDKILVKTPLLRNDNAFHDTLNNDSGISCPFVLNRPDQDGEGIEAVVRFGKSIAGHPKIVHGGVTALTFDNLFGMALFLQNTGAVFTAYIKVDFKAPLPCLTTAVVDITVDRKEGRKLYVTGRLKSLDGTVTFSSAEALFVKPK 238
[Close]
BLAST of mRNA_C-tenellus_contig7761.1.2 vs. uniprot
Match: A0A836CB13_9STRA (HotDog domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CB13_9STRA)

HSP 1 Score: 140 bits (354), Expect = 2.320e-35
Identity = 65/147 (44.22%), Postives = 99/147 (67.35%), Query Frame = 2 
Query:  824 LYNVDDELKKFPDIMKGNAFHETLNGEHTIFCPYFLIKREGDG-GLQSVVRFGPAVQGYPRLVHGGVTALTFDQLFGWALFFRDITNAFTAYLKVDYKMPIPCETIGVVDVSVYCTEGRKIFLRGSLQSLDGTITYAMADALFVMPK 1261
            L++V D L+++P+  + +  H+TLN  H + CP  ++  +  G  LQ+VVRFG   +G+P LVHGG+TALTFD L GW +F    TN  TAYL VD+K P+P  T  + +V +   EGRK+F  G++++LDG+IT+A   +LF++P+
Sbjct:    1 LHDVTDLLRRYPEYWRDHVLHDTLNYRHGVQCP--VVSHDSAGCRLQAVVRFGQQTRGHPDLVHGGITALTFDNLQGWCMFMDGRTNVLTAYLHVDFKAPLPTHTTVLAEVRIDRQEGRKLFASGTIRTLDGSITFATCSSLFIIPR 145
[Close]
BLAST of mRNA_C-tenellus_contig7761.1.2 vs. uniprot
Match: A0A067CQD3_SAPPC (4HBT domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CQD3_SAPPC)

HSP 1 Score: 87.4 bits (215), Expect = 3.170e-16
Identity = 42/124 (33.87%), Postives = 72/124 (58.06%), Query Frame = 2 
Query:  893 LNGEHTIFCPYFLIKREGDGGLQSVVRFGPAVQGYPRLVHGGVTALTFDQLFGWALFFRDITNAFTAYLKVDYKMPIPCETIGVVDVSVYCTEGRKIFLRGSLQSLDGTITYAMADALFVMPKP 1264
            + G++  F  +  + ++      S V FG ++ G+  +VHGG  +   D+LFGW +++      FTA L V+++ P+P +T+ +V   +   EGRK++L+  +Q  DG  TY  A +LF+MPKP
Sbjct:   53 IGGKYESFVVFGHVDKQS---TTSFVHFGSSLCGHEGIVHGGCISTICDELFGWTMYWVMDKAGFTANLNVNFRKPLPAQTLAIVTTELERIEGRKVYLKAKVQDADGN-TYTEATSLFIMPKP 172
[Close]
BLAST of mRNA_C-tenellus_contig7761.1.2 vs. uniprot
Match: T0Q347_SAPDV (4HBT domain-containing protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0Q347_SAPDV)

HSP 1 Score: 85.9 bits (211), Expect = 1.670e-15
Identity = 39/103 (37.86%), Postives = 64/103 (62.14%), Query Frame = 2 
Query:  962 SVVRFGPAVQGYPRLVHGGVTALTFDQLFGWALFFRDITNAFTAYLKVDYKMPIPCETIGVVDVSVYCTEGRKIFLRGSLQSLDGTITYAMADALFVMPKPVE 1270
            S+V FG  + G+  +VHGG  +   D+LFGW +++      FTA L V+++ P+P +T+ +V   +   EGRK++L+  +Q  +G  TY  A +LF+MPKP +
Sbjct:   91 SLVHFGEKLCGHTGIVHGGCISTVCDELFGWTMYWIMDKAGFTANLNVNFRKPLPAQTLAIVTTELERIEGRKVYLKAKVQDAEGN-TYTEATSLFIMPKPAQ 192
[Close]
BLAST of mRNA_C-tenellus_contig7761.1.2 vs. uniprot
Match: A0A5B8MHE1_9CHLO (4HBT domain-containing protein n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MHE1_9CHLO)

HSP 1 Score: 85.5 bits (210), Expect = 5.980e-15
Identity = 54/157 (34.39%), Postives = 82/157 (52.23%), Query Frame = 2 
Query:  815 RQTLYNVDDELKKF---PDIMKGNAFHETLNGEHTIFCPYFLIKREGDGGLQSVVRFGPAVQGYPRLVHGGVTALTFDQLFGWALF-------FRDITNAFTAYLKVDYKMPIPCETIGVV-DVSVYCTEGRKIFLRGSLQSLDGTITYAMADALFV 1252
            R++L  + D +K+    P   +  A+H TL GE  +     L   E +G +  V R G ++ G+  +VHGG+ A+ FD LFG   F         ++   FTA L V+Y+ P+PC    VV +  +   EGRK++L G   S +G I YA + ALF+
Sbjct:   75 RKSLGGIKDTMKRLDGTPAYKRMGAWHNTLKGEEMV-SELELYSDEENGSVAGVYRIGCSLCGHSGIVHGGIIAMGFDDLFGTCYFRNRSRVNHEELGPGFTANLDVNYRKPMPCGKGKVVFNARIDRVEGRKVYLSGFATSENGQIKYADSTALFI 230
[Close]
BLAST of mRNA_C-tenellus_contig7761.1.2 vs. uniprot
Match: A0A7S3C7J7_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chloropicon roscoffensis TaxID=1461544 RepID=A0A7S3C7J7_9CHLO)

HSP 1 Score: 84.7 bits (208), Expect = 1.120e-14
Identity = 53/141 (37.59%), Postives = 76/141 (53.90%), Query Frame = 2 
Query:  857 PDIMKGNAFHETLNGEHTIFCPYFLIKREGDGGLQSVVRFGPAVQGYPRLVHGGVTALTFDQLFGWALFFR----DITN----AFTAYLKVDYKMPIPCETIGVVDVS-VYCTEGRKIFLRGSLQSLDGTITYAMADALFV 1252
            P   K  A+H+TL G+ T+     L   E  G +  V + G A+ G+  L+HGG+ A+ FD LFG   F      D  N     FTA L V+Y+ P+PC+   VV V+ +   EGRK++L G   S DG + +A + ALF+
Sbjct:   93 PAYKKTGAWHKTLRGDDTV-RELELFTDEATGAVAGVYQLGCALCGHRGLIHGGIIAMGFDDLFGTCYFRNRPRVDHANNYGPGFTANLDVNYRRPMPCDRGEVVFVAKIDRVEGRKVWLSGEAYSADGKVKFADSTALFI 232
[Close]
BLAST of mRNA_C-tenellus_contig7761.1.2 vs. uniprot
Match: A0A0C3AYH0_9AGAM (4HBT domain-containing protein (Fragment) n=1 Tax=Serendipita vermifera MAFF 305830 TaxID=933852 RepID=A0A0C3AYH0_9AGAM)

HSP 1 Score: 75.5 bits (184), Expect = 1.030e-11
Identity = 43/124 (34.68%), Postives = 66/124 (53.23%), Query Frame = 2 
Query:  893 LNGEHTIFCPYFLIKREGDGGLQSVVRFGPAVQGYPRLVHGGVTALTFDQ-LFGWALFFRDITNAFTAYLKVDYKMPIPCETIGVVDVSVYCTEGRKIFLRGSLQSLDGTITYAMADALFVMPK 1261
            L G   +  P  L  R  +  +  V+  G ++ G+  +VHGG  A  FD  LF  A+         TA++++DYK P   +   V++  V   EGRK+F+ G ++ L+GT+  A A+ALFV PK
Sbjct:   89 LQGPGRMAIPPLLFVRVDEKAMTGVIHLGRSICGHDGIVHGGAIATLFDDSLFRTAVASFPAKIGVTAWIRIDYKSPTRADQFVVLNSKVDRVEGRKVFVSGQIEDLEGTVL-AKAEALFVQPK 211
[Close]
BLAST of mRNA_C-tenellus_contig7761.1.2 vs. uniprot
Match: A0A1Y1YNG3_9PLEO (HotDog domain-containing protein n=1 Tax=Clohesyomyces aquaticus TaxID=1231657 RepID=A0A1Y1YNG3_9PLEO)

HSP 1 Score: 74.7 bits (182), Expect = 1.580e-11
Identity = 42/143 (29.37%), Postives = 73/143 (51.05%), Query Frame = 2 
Query:  869 KGNAFHETLNGEHTIFCPYFLIKREGDGG------LQSVVRFGPAVQGYPRLVHGGVTALTFDQLFGWALFFR---------DITNAFTAYLKVDYKMPIPCETIGVVDVSVYCTEGRKIFLRGSLQSLDGTITYAMADALFV 1252
            + + F ETL  E TI C   L   + +        +++++  G  + G+PR++HGG  A   D++FG  +             +T+ FTAYL  +YK P+P   + +        EGRKI++RGS++   GT+ Y+  + +F+
Sbjct:   60 EDSFFAETLGTERTIRCLLTLRPSKLEDSEPRIREVRTIMDLGDGLNGHPRILHGGFVATMLDEVFGVLILSNLVLERESGGSVTSCFTAYLNTNYKRPVPAPGVVLCTAKFERKEGRKIYVRGSIEDGMGTV-YSTGEGMFL 201
[Close]
BLAST of mRNA_C-tenellus_contig7761.1.2 vs. uniprot
Match: A0A4P9ZPT6_9FUNG (HotDog domain-containing protein (Fragment) n=1 Tax=Dimargaris cristalligena TaxID=215637 RepID=A0A4P9ZPT6_9FUNG)

HSP 1 Score: 72.0 bits (175), Expect = 1.820e-11
Identity = 34/112 (30.36%), Postives = 63/112 (56.25%), Query Frame = 2 
Query:  929 LIKREGDGGLQSVVRFGPAVQGYPRLVHGGVTALTFDQLFGWALF-FRDITNAFTAYLKVDYKMPIPCETIGVVDVSVYCTEGRKIFLRGSLQSLDGTITYAMADALFVMPK 1261
            +   + D  +  +   G ++ G+  ++HGG+ A   D+ F    F F    + FTA L VDY+ P+P + + V+ +S+   +GRK+FL+  + SLDG  T+  + +L++ P+
Sbjct:   10 IFNNQTDDVMTQIQYLGRSLCGHDGIIHGGLLATIVDEAFARLAFAFLPGHSGFTANLNVDYRSPVPADIMVVLVISIDRVDGRKVFLKARMSSLDGKFTFLESTSLYIAPR 121
[Close]
BLAST of mRNA_C-tenellus_contig7761.1.2 vs. uniprot
Match: A0A1V9ZKD0_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZKD0_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 1.950e-11
Identity = 39/124 (31.45%), Postives = 70/124 (56.45%), Query Frame = 2 
Query:  893 LNGEHTIFCPYFLIKREGDGGLQSVVRFGPAVQGYPRLVHGGVTALTFDQLFGWALFFRDITNAFTAYLKVDYKMPIPCETIGVVDVSVYCTEGRKIFLRGSLQSLDGTITYAMADALFVMPKP 1264
            + G++  F  +  + ++      S V FG ++ G+  +VHGG  +   D+LFGW +        FTA L V+++ P+P +T+ +V   +   EGRK++L+ +++   G + Y  A +LF+MPKP
Sbjct:  197 IGGKYESFVVFGHVDKKS---TTSFVHFGNSLCGHEGIVHGGCISTICDELFGWTMVMDKA--GFTANLNVNFRKPLPAQTLAIVVTELERIEGRKVYLKSTVKDAAGNV-YTEATSLFIMPKP 314
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7761.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FR34_ECTSI1.070e-4351.594HBT domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A836CB13_9STRA2.320e-3544.22HotDog domain-containing protein (Fragment) n=1 Ta... [more]
A0A067CQD3_SAPPC3.170e-1633.874HBT domain-containing protein n=2 Tax=Saprolegnia... [more]
T0Q347_SAPDV1.670e-1537.864HBT domain-containing protein n=1 Tax=Saprolegnia... [more]
A0A5B8MHE1_9CHLO5.980e-1534.394HBT domain-containing protein n=1 Tax=Chloropicon... [more]
A0A7S3C7J7_9CHLO1.120e-1437.59Hypothetical protein (Fragment) n=1 Tax=Chloropico... [more]
A0A0C3AYH0_9AGAM1.030e-1134.684HBT domain-containing protein (Fragment) n=1 Tax=... [more]
A0A1Y1YNG3_9PLEO1.580e-1129.37HotDog domain-containing protein n=1 Tax=Clohesyom... [more]
A0A4P9ZPT6_9FUNG1.820e-1130.36HotDog domain-containing protein (Fragment) n=1 Ta... [more]
A0A1V9ZKD0_9STRA1.950e-1131.45Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7761contigC-tenellus_contig7761:527..4972 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FR34
Preferred nameTHEM4
PFAMs4HBT
Model size2184
Max annot lvl2759|Eukaryota
KEGG koko:K16339
KEGG Pathwayko04151,map04151
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005829,GO:0005886,GO:0006082,GO:0006139,GO:0006163,GO:0006629,GO:0006631,GO:0006637,GO:0006644,GO:0006650,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006839,GO:0006915,GO:0006996,GO:0007005,GO:0007006,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0008219,GO:0008637,GO:0009117,GO:0009150,GO:0009259,GO:0009966,GO:0009968,GO:0009987,GO:0010646,GO:0010648,GO:0012501,GO:0016020,GO:0016043,GO:0016289,GO:0016290,GO:0016787,GO:0016788,GO:0016790,GO:0019637,GO:0019693,GO:0019752,GO:0023051,GO:0023052,GO:0023057,GO:0031974,GO:0032048,GO:0032787,GO:0033865,GO:0033875,GO:0034032,GO:0034641,GO:0035336,GO:0035337,GO:0035383,GO:0035556,GO:0035965,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043491,GO:0043603,GO:0044237,GO:0044238,GO:0044255,GO:0044281,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046471,GO:0046483,GO:0046486,GO:0046902,GO:0047617,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051186,GO:0051234,GO:0051716,GO:0051896,GO:0051898,GO:0055086,GO:0061024,GO:0065007,GO:0065008,GO:0070013,GO:0071704,GO:0071840,GO:0071944,GO:0072521,GO:0090559,GO:1901135,GO:1901360,GO:1901564,GO:1901568,GO:1902108,GO:1902531,GO:1902532
Exons6
Evalue7.37e-48
EggNOG OGsKOG4781@1|root,KOG4781@2759|Eukaryota
Ec32 ortholog descriptionThioesterase superfamily
Ec32 orthologEc-09_003660.1
Descriptionthioesterase
Cds size924
COG categoryS
BRITEko00000,ko00001
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7761.1.2prot_C-tenellus_contig7761.1.2Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7761 942..4127 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790056.6428874-UTR-C-tenellus_contig7761:526..9411680790056.6428874-UTR-C-tenellus_contig7761:526..941Choristocarpus tenellus KU2346UTRC-tenellus_contig7761 527..941 +
1680790056.731629-UTR-C-tenellus_contig7761:4127..49721680790056.731629-UTR-C-tenellus_contig7761:4127..4972Choristocarpus tenellus KU2346UTRC-tenellus_contig7761 4128..4972 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790056.6536376-CDS-C-tenellus_contig7761:941..11761680790056.6536376-CDS-C-tenellus_contig7761:941..1176Choristocarpus tenellus KU2346CDSC-tenellus_contig7761 942..1176 +
1680790056.662404-CDS-C-tenellus_contig7761:1431..15261680790056.662404-CDS-C-tenellus_contig7761:1431..1526Choristocarpus tenellus KU2346CDSC-tenellus_contig7761 1432..1526 +
1680790056.6728454-CDS-C-tenellus_contig7761:2041..21951680790056.6728454-CDS-C-tenellus_contig7761:2041..2195Choristocarpus tenellus KU2346CDSC-tenellus_contig7761 2042..2195 +
1680790056.6847956-CDS-C-tenellus_contig7761:2631..27351680790056.6847956-CDS-C-tenellus_contig7761:2631..2735Choristocarpus tenellus KU2346CDSC-tenellus_contig7761 2632..2735 +
1680790056.7057698-CDS-C-tenellus_contig7761:3340..34391680790056.7057698-CDS-C-tenellus_contig7761:3340..3439Choristocarpus tenellus KU2346CDSC-tenellus_contig7761 3341..3439 +
1680790056.7212305-CDS-C-tenellus_contig7761:3890..41271680790056.7212305-CDS-C-tenellus_contig7761:3890..4127Choristocarpus tenellus KU2346CDSC-tenellus_contig7761 3891..4127 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7761.1.2

>prot_C-tenellus_contig7761.1.2 ID=prot_C-tenellus_contig7761.1.2|Name=mRNA_C-tenellus_contig7761.1.2|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=308bp
MLVLLIQLQEMWRCAVRFGRDSVLGKAQSLFNLASTTYYRYSGGSLVAPA
IAVTSVAAGLALGEGQRNQTAECRETLRNGRDIGSDVEEEHAIEGDGLVR
IRKTALDFLKAQEQLQLGSESRVSTPETDKKPRRQTLYNVDDELKKFPDI
MKGNAFHETLNGEHTIFCPYFLIKREGDGGLQSVVRFGPAVQGYPRLVHG
GVTALTFDQLFGWALFFRDITNAFTAYLKVDYKMPIPCETIGVVDVSVYC
TEGRKIFLRGSLQSLDGTITYAMADALFVMPKPVEQVKVAVVPTAEVEGG
TSPGVED*
back to top

mRNA from alignment at C-tenellus_contig7761:527..4972+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7761.1.2 ID=mRNA_C-tenellus_contig7761.1.2|Name=mRNA_C-tenellus_contig7761.1.2|organism=Choristocarpus tenellus KU2346|type=mRNA|length=4446bp|location=Sequence derived from alignment at C-tenellus_contig7761:527..4972+ (Choristocarpus tenellus KU2346)
TTTCGCAGAACTTACTGCACATGATGATGGTCAGCGGGTCAACGTCATCC
ATCATCACAATATAATAATGTTTTCGCCGACATTGCTCTATTCTGTCATA
ATAGTGATTATAAGCCCACTCAACAATAGCATCAGACATCATTTTCTTGT
TTGACCGCCTTACAGTATTTCGCCGTCTTCTTCTGTCGGTTTTCCATGCA
TAGTAACCTCCATTGCCATTGCTCCCTTCACAAGGCAAAACCAAGTGGGG
ACGACAATAGAAGAAGATATAAACTGCTGTAGGTCACGTAAAGCACGAGA
GGGAAGTAGTGGGTGAGGTAGAAAACTTGTCCAGAGGAGAGAGGTAACAA
AGTAGTAAATAAAGAGGAATAACAAGGTATTTCCATCGCGCGCATCGTGC
GCATTTTAGAAGGAGATGTTAGTTTTACTGATACAACTCCAAGAAATGTG
GAGATGTGCTGTTCGTTTTGGAAGAGATTCTGTGCTTGGGAAGGCACAGT
CGCTGTTCAACTTAGCTTCTACAACCTACTACAGATATAGTGGCGGTAGT
TTGGTTGCTCCTGCAATCGCCGTAACCTCGGTTGCTGCAGGACTAGCACT
GGGAGAAGGACAGCGGAACCAAACTGCTGAGTGTCGTGAAACTCTGAGAA
GTGAGTCCTTACACTTAGATCTTACTTACATTTGCTCTTCAGTAGGTGGA
GAGGGCTCAATTTTCCATTAGAAGACTATGGGTGTTGTGGCTCTGGTCGA
ATGATAGCAAGCCTCACTAGGTTGGAGAGGCGCTTCCTCCTTCGACGATA
CAGTAAGGGTCTACTCGACTATGTAATGGATCTCTCGACCATATGCTGGA
GCTCTTGTTCCAAACATCTTCTCTCCTCAAGAACCTATGACACGTCTTGA
TACAGATGGAAGGGACATTGGAAGTGATGTGGAGGAGGAGCATGCCATTG
AGGGAGACGGGCTGGTTCGTATTAGGAAGACTGCGCTCGACTTCTTGAAG
GTCTGCCCTCGTGGACTATTTCTTGGGTAGCTATGAACATTACACGAAGT
GCTGGGTAGGTAACAACAGATGCCGTGAGAGTCCTCACTCCCTTCAAACT
TGTGTGGCTGCCCTCGCATCTACCCTTTTGTCCAGATTGGTTTGAATATG
AACAGCAACGCTCTATTGTAGTAGGTGAAAGATGCGAGGTGCGCAAACAG
TTGATGTCGTCGATTGGTTCTAGGCCCACCTAGTATGAGGCAGGCGCTCG
ATATTCTTGCACGAACAAACCCGACCATATCTAAGAGTGCCCGTTGTCCC
AACCTTCTTCTGTATTGCTCCTCAATGTGTTCGCGACATCCAGAGATAGC
AATCAATGATCAGGTTCAGACCTTATCCTCTTTTCCCACCCCCTTGCCTC
TCTTTCAAATCTTCACCATCTTTGGACCAAGCTCCTCAACAGTAGTGATG
TGAATCAATCGCAGTTTATGCTTTTTCTGGTCTTCAACGAACTCACCTCC
TCTCCACCCTTCCAGGCCCAGGAGCAGCTTCAACTAGGTTCAGAATCTCG
TGTGAGCACTCCCGAGACAGACAAGAAACCACGACGCCAGACCTTGTACA
ATGTCGACGATGAGTTGAAGAAGTTTCCCGATATAATGAAGGGGAACGCT
TTCCATGAGACACTCAACGGTAAGCATAATCCCCCTTCGCAATGCTTGAT
GCGAGACCTACACGCGATACCAGCACAGGGGCGTCTCAAGTCGACTCTTC
AGTTCCTCACACTTTGTAACAACAAACCGAAACAGATATGGTTTTGAGAG
TATGCATGTCAGCATCCGAGGCACCTATGTTGCTCCTGCAGCTGCTGCCC
AATGTTCCCTCATCATTACCCTCTTGTTTATGGATGAGCTCTTCCTACTT
GCCACTCTCGGTACCCCTTTAGAAAGCTCCTCTTGCTGTTCTATTACAAT
AGTTTCCTTGACAGTAACAGGCGTTGTGTCTAGTAGTGGAGGAAATTATT
TTATTTTCCAGTCGACGATTTGGGTCTCTTAGGCATCCGTCCATGTTGAT
TCTAACAACAATTAGAACAACAGCGATGTTTTCCCTGCTTGAAACGCTTG
CTCAGGAGAGCATACAATATTCTGTCCCTACTTTTTGATAAAGCGTGAAG
GAGATGGCGGGCTACAGTCTGTTGTTCGCTTTGGCCCTGCTGTGCAAGGA
TATCCCAGGGTAAGTAAAACCAAACTGTTGTGAGTTATCGAGACTGAACA
AGAAAAGTGGACTAGGGGGAGATGGGTAATGCCTCTACAGAATCGAGGGC
TGATTAATGTTTGAGGTGTTTCTTGCATCCTTTGAATTGTGTTTGTTTTC
TCCAGATGGTAATTTTCTGTTTGATGCAGGGTAGCATGCACTACAGGATG
CTGTGTATTGTGCACTATCCAGCATATGTGCACTAGTTAAAAGAGCTCTT
GGAAGTGCTAACTTGATATGTGGGATGTAATTTTATAGCATGTTCCAGGC
TCATTTCTTCTTGAATGATAATCCTTAAGTGTTTTGTTGTACATTGCAGG
TAGGTATCTTTCCCAGTAGCCCACTGGCCTCAACAGGACACAAACATCAA
AAATCAATTATTTCCCTTGGCTTCTCCTGAGTTATGGAGGCATGAGGAAC
AGGATGCATCCTCTTCGAGACTCTTTTTCAGGCCACTCCTTGACCTCAGG
ATTGCCAATCTGTGTCCCCAAATACTCCTTGATCGATTGATTAACACCCT
TTATTAACCCACATTCCTGCTCCCCCCCCTCTGCTGCTGCGTACTCCCTG
GATGACGTACATAGCTTGTGCATGGAGGTGTAACAGCACTAACCTTTGAC
CAGTTGTTTGGGTGGGCGCTCTTCTTTCGAGACATCACCAACGCCTTTAC
TGCATACTTGAAGGTGAAGTTCCATGTGTAGTAGGAGTTGCACATCTTAC
ATCTTGCTCTTGTCTCCTCTTTGACCCTTCCGTGCGGTGGGTGCTTCAGG
GGACGGGGGGGACAGGGGGGGACAGGGGGTGGAGGTTTTGATCATTTTCA
TGGATTTCGACGTATTCCTGTCCAGAAGTGTCGCACTAGTGGTGACTCTG
CGTGTGTACTAGTTTTCCCACCTGCTGTGCGACTTCATGCTATCCACTAT
AGGTGTAGAGTACTCAAAGGTGTAGAGTACTCAAAAGGTGTAGAGTAATC
AAAGGTGTAGAGTACTCAAAGGTGTAAGGTACTCAAAGGTGTAGAGTACT
CAAAGGTGTAGAGTACTCAAAGGTGTAGAGCACTCAAAGATGTAGAGCAC
TCAAGAGCGGGATGATGGTGGTTGAGAGGCATCAACAATAACATTCCGAC
ACTTTCCTCCGCAGGTGGACTACAAGATGCCGATCCCATGCGAGACAATT
GGAGTTGTTGACGTTAGTGTCTATTGCACTGAGGGGAGAAAGATATTTCT
GCGGGGTAGTCTCCAGAGCCTGGATGGAACCATCACCTATGCTATGGCTG
ATGCGCTTTTTGTTATGCCCAAGCCTGTTGAGCAGGTCAAAGTTGCTGTG
GTCCCCACTGCAGAAGTGGAGGGGGGCACCTCCCCCGGAGTTGAAGATTG
AGTAATATTTTTTGGTTTGATTTGGTTCATGCTTGATAGCTCTATTTGTG
CGGAGAGTAGTGTGTTTCTCCCTCCAAGCCCCTTTTTTTCTTTTCTCTTC
TGTTTCTTGCGGCTTTGCTTTTTTGGGGTGAGCTTGGCCCTTCTCGGTTC
ATATATGAAGAGGGGATTGGAAGAGGGGTGCCGCCTGCGATCGGCTTCAG
TGATTCCTGTTTAGGGTTGTGTGTCGTCATTTGTGGAAGAGGTTCATCTT
GTTAGATGATGGCAGATGCACAGAGGAACATTTGCCGCCATCCTTTGATG
GAATGTTCTTTTGAGTGTATTATGTGTTGCAGGTGCTTCTATTAACAAAC
TATAAAGCATTGCTGTAGAAGGAGCAGGGCCTGCAGAAGGAAATACATAT
ATTTTCGAAGTGTAACGAAAAGGACCAAGTACTACTGGAGTATTTGGAAA
ATATATGTGTGTTTTAAAGTTTTTAGTAGGGCGTACATGCAGATACTTTG
GTGTATCTCTTTTGGTTTGTGTCCATGATATGTGCTGCAGTTGCCTACTC
AGAAACGTGTATGGATGGACCCTAACCCTAAACTTTGCCCTATCTCATGG
AAAGCTAAATGTGATTTTTCCACTCGGAACAGAGGACACACATGAGATCG
GAACATTGGAGGTTTCACACAGACGCATCGTATTGTGCACCCACGCACTC
CTCACATTGCTGGTTTGACCAATTAGTAACCGGATGGGATGTGTTAATAC
AGCCTTCTATTTCATGGGGATACCCTTCCTTGAGACTGAGTGTTAATACA
CGTTTGACTCTACATGGTGCCGTGAATGTCTGATGGAAAGTGGGGG
back to top

Coding sequence (CDS) from alignment at C-tenellus_contig7761:527..4972+

>mRNA_C-tenellus_contig7761.1.2 ID=mRNA_C-tenellus_contig7761.1.2|Name=mRNA_C-tenellus_contig7761.1.2|organism=Choristocarpus tenellus KU2346|type=CDS|length=924bp|location=Sequence derived from alignment at C-tenellus_contig7761:527..4972+ (Choristocarpus tenellus KU2346)
ATGTTAGTTTTACTGATACAACTCCAAGAAATGTGGAGATGTGCTGTTCG
TTTTGGAAGAGATTCTGTGCTTGGGAAGGCACAGTCGCTGTTCAACTTAG
CTTCTACAACCTACTACAGATATAGTGGCGGTAGTTTGGTTGCTCCTGCA
ATCGCCGTAACCTCGGTTGCTGCAGGACTAGCACTGGGAGAAGGACAGCG
GAACCAAACTGCTGAGTGTCGTGAAACTCTGAGAAATGGAAGGGACATTG
GAAGTGATGTGGAGGAGGAGCATGCCATTGAGGGAGACGGGCTGGTTCGT
ATTAGGAAGACTGCGCTCGACTTCTTGAAGGCCCAGGAGCAGCTTCAACT
AGGTTCAGAATCTCGTGTGAGCACTCCCGAGACAGACAAGAAACCACGAC
GCCAGACCTTGTACAATGTCGACGATGAGTTGAAGAAGTTTCCCGATATA
ATGAAGGGGAACGCTTTCCATGAGACACTCAACGGAGAGCATACAATATT
CTGTCCCTACTTTTTGATAAAGCGTGAAGGAGATGGCGGGCTACAGTCTG
TTGTTCGCTTTGGCCCTGCTGTGCAAGGATATCCCAGGCTTGTGCATGGA
GGTGTAACAGCACTAACCTTTGACCAGTTGTTTGGGTGGGCGCTCTTCTT
TCGAGACATCACCAACGCCTTTACTGCATACTTGAAGGTGGACTACAAGA
TGCCGATCCCATGCGAGACAATTGGAGTTGTTGACGTTAGTGTCTATTGC
ACTGAGGGGAGAAAGATATTTCTGCGGGGTAGTCTCCAGAGCCTGGATGG
AACCATCACCTATGCTATGGCTGATGCGCTTTTTGTTATGCCCAAGCCTG
TTGAGCAGGTCAAAGTTGCTGTGGTCCCCACTGCAGAAGTGGAGGGGGGC
ACCTCCCCCGGAGTTGAAGATTGA
back to top