mRNA_C-tenellus_contig7749.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7749.2.1
Unique NamemRNA_C-tenellus_contig7749.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig7749.2.1 vs. uniprot
Match: A0A6H5KSX3_9PHAE (ATP-grasp domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KSX3_9PHAE)

HSP 1 Score: 177 bits (449), Expect = 5.750e-50
Identity = 89/136 (65.44%), Postives = 109/136 (80.15%), Query Frame = 1
Query:    4 LVEVNSRWHLTDFAPLTLACIGYEALSETISAYVDPERFGSLPSEPR--QLIRHGRVVHLVCSVEGTLVKVQHMDELQSMESFAGIDVYPGFSTPG-GHVEPTIDIRSDAGWVRLVHESEEVVEKDYQRTVDLMPT 402
            LVEVN+RWHLTDFAPLT AC+GY A+ ET++AY+DP RF +LP  P   +  R+GRVVHLV  VEGTL ++ H +E++++ESFAGIDVY      G GHV+ TIDIRSDAGWVRLVHE EEVVE+DY+R V+LMPT
Sbjct:  481 LVEVNTRWHLTDFAPLTDACVGYNAVEETLAAYLDPGRFDALPRVPSTGKDSRYGRVVHLVSYVEGTLERIFHEEEIRNLESFAGIDVYADPKNGGSGHVKKTIDIRSDAGWVRLVHEKEEVVERDYRRVVELMPT 616          
BLAST of mRNA_C-tenellus_contig7749.2.1 vs. uniprot
Match: A0A835ZA87_9STRA (ATP-grasp domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZA87_9STRA)

HSP 1 Score: 140 bits (352), Expect = 4.550e-38
Identity = 69/133 (51.88%), Postives = 85/133 (63.91%), Query Frame = 1
Query:    4 LVEVNSRWHLTDFAPLTLACIGYEALSETISAYVDPERFGSLPSEPRQLIRHGRVVHLVCSVEGTLVKVQHMDELQSMESFAGIDVYPGFSTPGGHVEPTIDIRSDAGWVRLVHESEEVVEKDYQRTVDLMPT 402
            L+E N RWHLTDF  L   C+GY A+  T+ AY+D E F +LP  P +L   GRVVHLVC   GT+  V+H   ++++ SF  +DVY  F   G  V PTIDIRSDAGWV L H    VVE+DY+  V LMPT
Sbjct:  179 LIEYNGRWHLTDFRELCNDCVGYNAIDATVDAYLDHEAFDALPPAPLKLAAAGRVVHLVCHTAGTVAAVRHGAAIRALRSFRAMDVYGAFGV-GQRVSPTIDIRSDAGWVHLSHADAHVVEEDYRALVALMPT 310          
BLAST of mRNA_C-tenellus_contig7749.2.1 vs. uniprot
Match: A0A7S3L7R6_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L7R6_9STRA)

HSP 1 Score: 128 bits (322), Expect = 4.420e-35
Identity = 66/135 (48.89%), Postives = 92/135 (68.15%), Query Frame = 1
Query:    1 MLVEVNSRWHLTDFAPLTLACIGYEALSETISAYV-DPERFGSLPSEPRQLIRHGRVVHLVCSVEGTLVKVQHMDELQSMESFAGIDVYPGFSTPGGHVEPTIDIRSDAGWVRLVHESEEVVEKDYQRTVDLMPT 402
            MLVEVN R H  DFAPLT+AC+GY AL  T+ +++ D E +   P  P  L  HG +VHLV    G L +V H+DE+ +++SF   +VY  F  PG  ++PT+DIRSDAGWV+L++ESEE + KDY++ +  MP+
Sbjct:   43 MLVEVNCRQHNMDFAPLTMACVGYNALDLTLVSFLGDKEDWDKFPDLP-VLRGHGCMVHLVNYAAGQLKEVNHLDEMSALDSFLDGEVYEYFLAPGTEIKPTVDIRSDAGWVQLINESEEDLVKDYEQILQWMPS 176          
BLAST of mRNA_C-tenellus_contig7749.2.1 vs. uniprot
Match: A0A7S1TTP0_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TTP0_9STRA)

HSP 1 Score: 127 bits (318), Expect = 8.460e-32
Identity = 64/130 (49.23%), Postives = 85/130 (65.38%), Query Frame = 1
Query:    1 MLVEVNSRWHLTDFAPLTLACIGYEALSETISAYVDPERFGSLPSEPRQLIRHGRVVHLVCSVEGTLVKVQHMDELQSMESFAGIDVYPGFSTPGGHVEPTIDIRSDAGWVRLVHESEEVVEKDYQRTVD 390
            +L+EVN RWH TDF+ +  AC+GY A   T+ AY+ PER   LP  P  L  HGR+VHLVC  EGT+ +V+H  E Q++ES     V+  F   G  V PT+DIR+DAG+  L HE  EVVE+DYQ+ ++
Sbjct:  366 VLIEVNCRWHDTDFSGICNACVGYNAHDLTLDAYLRPERVRDLPKMPLDLQAHGRIVHLVCYAEGTVREVRHEAEAQALESCRAFKVHEEFGV-GEAVTPTVDIRTDAGFAILWHEDPEVVERDYQQILE 494          
BLAST of mRNA_C-tenellus_contig7749.2.1 vs. uniprot
Match: A0A7S2ES69_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2ES69_TRICV)

HSP 1 Score: 112 bits (280), Expect = 5.940e-29
Identity = 61/144 (42.36%), Postives = 92/144 (63.89%), Query Frame = 1
Query:    4 LVEVNSRWHLTDFAPLTLACIGYEALSETISAYV-DPERFGSLPSEPRQLI-----------RHGRVVHLVCSVEGTLVKV--QHMDELQSMESFAGIDVYPGFSTPGGHVEPTIDIRSDAGWVRLVHESEEVVEKDYQRTVDL 393
            LVEVN R H TDFAPLT AC+GY AL   ++AY+ D E F    +E ++L+            +G +VHLV  VEG LV+V  + ++E++++ES   ++VYP F+ PG  +  T+DIR+D+GW  L+++  E + +DY R V+L
Sbjct:    6 LVEVNCRQHNTDFAPLTSACVGYNALDMLLAAYLGDAEEFPP-DTEHKRLVWDDLPDLPVTRAYGAIVHLVSHVEGELVEVNGEALEEIRNLESVLAMEVYPQFTRPGVRIPKTVDIRTDSGWCHLMNDDPEALREDYDRIVEL 148          
BLAST of mRNA_C-tenellus_contig7749.2.1 vs. uniprot
Match: A0A7S2U7R4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U7R4_9STRA)

HSP 1 Score: 118 bits (295), Expect = 3.310e-28
Identity = 65/147 (44.22%), Postives = 92/147 (62.59%), Query Frame = 1
Query:    4 LVEVNSRWHLTDFAPLTLACIGYEALSETISAYVDPE------------RFGSLPSEPRQLIR-HGRVVHLVCSVEGTLVKVQH--MDELQSMESFAGIDVYPGFSTPGGHVEPTIDIRSDAGWVRLVHESEEVVEKDYQRTVDLMP 399
            LVEVN R H TDFAPLT AC+GY AL   ++AY+               ++ +LP  P  + R +G +VHLVC VEGT+  V    M+E++ MES   +D+YP F   G HV  T+DIR+DAG + ++++ EE  ++DY+R V+LMP
Sbjct:  686 LVEVNCRQHNTDFAPLTSACMGYNALDMLLAAYLGDATEFPPNTEHMRLKWDTLPDLP--VTRGYGAIVHLVCHVEGTITGVNRDAMNEIEHMESVLNMDIYPQFLKIGNHVSKTVDIRTDAGAIHIMNDDEEQFQRDYERIVELMP 830          
BLAST of mRNA_C-tenellus_contig7749.2.1 vs. uniprot
Match: A0A1Z5JBC6_FISSO (ATP-grasp domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JBC6_FISSO)

HSP 1 Score: 117 bits (292), Expect = 4.010e-28
Identity = 61/136 (44.85%), Postives = 87/136 (63.97%), Query Frame = 1
Query:    4 LVEVNSRWHLTDFAPLTLACIGYEALSETISAYV----DPERFGSLPSEPRQLIRHGRVVHLVCSVEGTLVKVQHMDELQSMESFAGIDVYPGFSTPGGHVEPTIDIRSDAGWVRLVHESEEVVEKDYQRTVDLMP 399
            LVEVN R H  DFAPLT+ACI Y A    + AY     + +R+  LP+    L  HG +VHLV    G+LV+V H++++ ++ S   ++VY  F TP   +EPTIDIR+DAGWV+L++E  E ++ DY++ V  MP
Sbjct:  348 LVEVNCRQHNMDFAPLTMACIRYNAFQMLLDAYFGGDDEWDRYPELPT----LQAHGCMVHLVNYARGSLVQVHHLEDMAALPSVLDLEVYAEFQTPSTWLEPTIDIRTDAGWVQLINEDPEALQHDYEQIVAWMP 479          
BLAST of mRNA_C-tenellus_contig7749.2.1 vs. uniprot
Match: B7FW53_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FW53_PHATC)

HSP 1 Score: 115 bits (288), Expect = 2.130e-27
Identity = 62/136 (45.59%), Postives = 85/136 (62.50%), Query Frame = 1
Query:    1 MLVEVNSRWHLTDFAPLTLACIGYEALSETISAYVDPERFGSL--PSEPRQLIRHGRVVHLVCSVEGTLVKVQHMDELQSMESFAGIDVYPGFSTPGGHVEPTIDIRSDAGWVRLVHESEEVVEKDYQRTVDLMPT 402
            +LVEVN R H  DF PLT+ACIGY AL  T+ A +  E    +  P+ P  L   G +VHL+    G L +V+H++E+ ++ S    +VY  F  PG  +EPT+DIRSDAGWV+LVHE    +E +Y++ V  MPT
Sbjct:  436 VLVEVNCRQHNMDFCPLTMACIGYNALDMTVDALLGDEESWKVTYPAFPA-LRAQGCMVHLINYASGVLNEVKHLEEIDALPSVLNWEVYDHFREPGILIEPTVDIRSDAGWVQLVHEDLNTLEHNYEQLVAWMPT 570          
BLAST of mRNA_C-tenellus_contig7749.2.1 vs. uniprot
Match: A0A1Z5KLP2_FISSO (ATP-grasp domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KLP2_FISSO)

HSP 1 Score: 114 bits (284), Expect = 2.730e-27
Identity = 59/134 (44.03%), Postives = 83/134 (61.94%), Query Frame = 1
Query:    1 MLVEVNSRWHLTDFAPLTLACIGYEALSETISAYVD-PERFGSLPSEPRQLIRHGRVVHLVCSVEGTLVKVQHMDELQSMESFAGIDVYPGFSTPGGHVEPTIDIRSDAGWVRLVHESEEVVEKDYQRTVDLMP 399
            MLVE+N R H  DFAPLT+ACI Y A    + AY    + +   P  P  L  HG +VHLV    G+LV+V H+ ++ ++ S    +VY  F TP   +EPTIDIR+DAGWV+L++E  E ++ DY++ +  MP
Sbjct:  287 MLVEINCRQHNMDFAPLTMACIRYNAFQILLGAYFGGDDEWDQYPELPT-LQAHGCMVHLVNYARGSLVQVHHLKDISALPSVLEFEVYEEFQTPSTWLEPTIDIRTDAGWVQLINEDPEALQHDYEQILAWMP 419          
BLAST of mRNA_C-tenellus_contig7749.2.1 vs. uniprot
Match: A0A7S1YRH0_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1YRH0_9STRA)

HSP 1 Score: 107 bits (268), Expect = 2.160e-25
Identity = 62/150 (41.33%), Postives = 85/150 (56.67%), Query Frame = 1
Query:    4 LVEVNSRWHLTDFAPLTLACIGYEALSETISAYV-------------DPERFG--SLPSEPRQLIRHGRVVHLVCSVEGTLVKVQH--MDELQSMESFAGIDVYPGFSTPGGHVEPTIDIRSDAGWVRLVHESEEVVEKDYQRTVDLMPT 402
            LVEVN R H  DF PLT+ CIGY      + AY+             +PER     LPS P + + +G +VHLV    GTL ++    + E+Q M S   ++VYP F   G  + PTIDIR+DAGWV++V+ +    +KDY R ++LMPT
Sbjct:  199 LVEVNCRQHNMDFIPLTMECIGYNIFDMLLGAYLGGEDDPFVYPMETEPERLNWDILPSNPPKRM-NGAMVHLVNYANGTLTRLNEDALREIQRMPSVMNMEVYPPFLQMGNTISPTIDIRTDAGWVQMVNPNPNEFQKDYDRIIELMPT 347          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7749.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KSX3_9PHAE5.750e-5065.44ATP-grasp domain-containing protein n=2 Tax=Ectoca... [more]
A0A835ZA87_9STRA4.550e-3851.88ATP-grasp domain-containing protein n=1 Tax=Tribon... [more]
A0A7S3L7R6_9STRA4.420e-3548.89Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A7S1TTP0_9STRA8.460e-3249.23Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S2ES69_TRICV5.940e-2942.36Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A7S2U7R4_9STRA3.310e-2844.22Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
A0A1Z5JBC6_FISSO4.010e-2844.85ATP-grasp domain-containing protein n=1 Tax=Fistul... [more]
B7FW53_PHATC2.130e-2745.59Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A1Z5KLP2_FISSO2.730e-2744.03ATP-grasp domain-containing protein n=1 Tax=Fistul... [more]
A0A7S1YRH0_9STRA2.160e-2541.33Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7749contigC-tenellus_contig7749:5285..6630 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FY34
PFAMsATP-grasp_4
Model size402
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.06e-51
EggNOG OGsCOG0439@1|root,2S0EE@2759|Eukaryota
DescriptionATP-grasp domain
Cds size402
COG categoryI
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790055.7733905-CDS-C-tenellus_contig7749:5284..53711680790055.7733905-CDS-C-tenellus_contig7749:5284..5371Choristocarpus tenellus KU2346CDSC-tenellus_contig7749 5285..5371 +
1680790055.7855208-CDS-C-tenellus_contig7749:6315..66301680790055.7855208-CDS-C-tenellus_contig7749:6315..6630Choristocarpus tenellus KU2346CDSC-tenellus_contig7749 6316..6630 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7749.2.1prot_C-tenellus_contig7749.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7749 5285..6630 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7749.2.1

>prot_C-tenellus_contig7749.2.1 ID=prot_C-tenellus_contig7749.2.1|Name=mRNA_C-tenellus_contig7749.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=134bp
MLVEVNSRWHLTDFAPLTLACIGYEALSETISAYVDPERFGSLPSEPRQL
IRHGRVVHLVCSVEGTLVKVQHMDELQSMESFAGIDVYPGFSTPGGHVEP
TIDIRSDAGWVRLVHESEEVVEKDYQRTVDLMPT
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mRNA from alignment at C-tenellus_contig7749:5285..6630+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7749.2.1 ID=mRNA_C-tenellus_contig7749.2.1|Name=mRNA_C-tenellus_contig7749.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1346bp|location=Sequence derived from alignment at C-tenellus_contig7749:5285..6630+ (Choristocarpus tenellus KU2346)
ATGCTGGTGGAAGTTAACTCTCGATGGCACCTCACTGACTTTGCACCACT AACCTTGGCTTGCATCGGCTATGAAGCTCTCTCTGAGGTACATACGTATG TATTTATATATGTCTTGTGTATGCGGATGAATGTATGTGTATGTGGTGTA TGTATTTATTTACGTTCTTGTATTATGCATGTAATAATAGTAATAATAAT ATTGACATTGAAAGATCTGGACAGGTACGGTCTCTACTCGAAACAGATGA TTGTCAGGTGGATATCTTCACACCATAGGTTGTCAACCTTTTTTTTGTTT GTTCAGTCACAGACCAAGCCCTCGTCTGCCCATCTGTCAGTGACGTAGCT CACCCTCTCAACATCTACTTCTCCTACCCTTTTTTCTTCAGGATTTTGTT GCCCTGATGACTGCTCATTCGTTCGAATAATTGTTCCACTAGTTTCTTGC ACAATTGTTCTGTTTTTTTCAAACAAAACATGAACAGCAATAATGTGAAC ATAACCAGCAAACCGACGCAAGGGGTGATTAAGGATGTGACCGATGAGAG TCCTTGCCCGCTAGTAAAACCTCTACGTGTAAAAAGCTAGTAGATGAAAA TCTGCTAGATATTTCCACAAGTTGGTATGTAGACATGAAATTCGTATGTT CCACGTAACTATCTATTCCTGGATGATGATTGATGATGGTGATGATTGAT TGATGATGATTGATGACTATGATGATGATGATGATTATGCCACAAGAGCA TTTTTTTCCTTTTGATGGTGCACTTCTTAAAGCACCTGTTTTAAGAACAG TCCGCAGGGGGAACCCGGCTAAAATACTAAGTAACCAACAGCAGTGAAAA GTATTTCTTTTTTTCTTTTTTTTGAAACTCCCAATTCTCCTAACCTTCGT TCTACAATTCGAAACCTTTTTTTTTTTTTTGAAATAGTATAAAATATGTA TCGACCTCATCTACTCTCCCTTTCTGTTACTCTTGCACTCTTTTATTTTT TTCTGGGGTAAACGTGGCGTGGACATGCCAGACGATCTCTGCCTACGTGG ACCCAGAACGGTTTGGTTCCCTTCCCTCAGAACCCAGACAACTGATCAGG CATGGCCGGGTCGTGCACCTGGTTTGTTCTGTTGAGGGTACCCTTGTCAA GGTGCAGCATATGGACGAACTGCAGTCAATGGAGAGCTTCGCAGGCATTG ACGTCTACCCGGGTTTCTCAACCCCTGGGGGGCATGTGGAACCGACGATT GATATCCGATCTGATGCAGGGTGGGTCAGGTTGGTTCATGAGTCGGAAGA AGTTGTAGAAAAGGACTACCAACGGACAGTGGACCTTATGCCCACA
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Coding sequence (CDS) from alignment at C-tenellus_contig7749:5285..6630+

>mRNA_C-tenellus_contig7749.2.1 ID=mRNA_C-tenellus_contig7749.2.1|Name=mRNA_C-tenellus_contig7749.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=402bp|location=Sequence derived from alignment at C-tenellus_contig7749:5285..6630+ (Choristocarpus tenellus KU2346)
ATGCTGGTGGAAGTTAACTCTCGATGGCACCTCACTGACTTTGCACCACT
AACCTTGGCTTGCATCGGCTATGAAGCTCTCTCTGAGACGATCTCTGCCT
ACGTGGACCCAGAACGGTTTGGTTCCCTTCCCTCAGAACCCAGACAACTG
ATCAGGCATGGCCGGGTCGTGCACCTGGTTTGTTCTGTTGAGGGTACCCT
TGTCAAGGTGCAGCATATGGACGAACTGCAGTCAATGGAGAGCTTCGCAG
GCATTGACGTCTACCCGGGTTTCTCAACCCCTGGGGGGCATGTGGAACCG
ACGATTGATATCCGATCTGATGCAGGGTGGGTCAGGTTGGTTCATGAGTC
GGAAGAAGTTGTAGAAAAGGACTACCAACGGACAGTGGACCTTATGCCCA
CA
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