mRNA_C-tenellus_contig7729.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7729.2.1
Unique NamemRNA_C-tenellus_contig7729.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig7729.2.1 vs. uniprot
Match: D8LB95_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LB95_ECTSI)

HSP 1 Score: 127 bits (319), Expect = 5.770e-32
Identity = 77/169 (45.56%), Postives = 100/169 (59.17%), Query Frame = 1 
Query:    1 ALIQLNSVSVAKATFRHFTEDEEPRVGIRRVYVNYSRSQSMEIREGSD--------------------------------SNGTDFTRGDNNV-AVGATPA------IQDTSNRYAHLILEDHSKLVGLATAYLQKYGITGGEGAILNIHQREEMSEYLRHSNSSSAAV 390
            AL+QL SVSVAKAT RH+ ED EP++G +RVY+NYSRS+S+E R+G                                  +NG D  R  N    VG          +Q+T + YAHLI+EDH+KL+GLAT YLQ YGI GGEGAILNI+QREEM+E  R + +++ A+
Sbjct:  264 ALVQLPSVSVAKATMRHYEEDAEPKIGQKRVYLNYSRSRSIETRDGESLAVGATAGGGXXXXXXXXXXXXXXXXXNVNGGNNGLDLARAINAARGVGGMDGGSTGNPMQETPSPYAHLIMEDHAKLLGLATCYLQTYGIPGGEGAILNINQREEMAERQRQAMAAAFAL 432
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7729.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LB95_ECTSI5.770e-3245.56Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7729contigC-tenellus_contig7729:5425..6519 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size390
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionNucleotide-binding alpha-beta plait domain
Ec32 orthologEc-27_004720.1
Cds size390
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790054.6151445-CDS-C-tenellus_contig7729:5424..55181680790054.6151445-CDS-C-tenellus_contig7729:5424..5518Choristocarpus tenellus KU2346CDSC-tenellus_contig7729 5425..5518 -
1680790054.6323853-CDS-C-tenellus_contig7729:5746..58321680790054.6323853-CDS-C-tenellus_contig7729:5746..5832Choristocarpus tenellus KU2346CDSC-tenellus_contig7729 5747..5832 -
1680790054.6454248-CDS-C-tenellus_contig7729:6309..65191680790054.6454248-CDS-C-tenellus_contig7729:6309..6519Choristocarpus tenellus KU2346CDSC-tenellus_contig7729 6310..6519 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7729.2.1prot_C-tenellus_contig7729.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7729 5425..6519 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7729.2.1

>prot_C-tenellus_contig7729.2.1 ID=prot_C-tenellus_contig7729.2.1|Name=mRNA_C-tenellus_contig7729.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=130bp
ALIQLNSVSVAKATFRHFTEDEEPRVGIRRVYVNYSRSQSMEIREGSDSN
GTDFTRGDNNVAVGATPAIQDTSNRYAHLILEDHSKLVGLATAYLQKYGI
TGGEGAILNIHQREEMSEYLRHSNSSSAAV
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mRNA from alignment at C-tenellus_contig7729:5425..6519-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7729.2.1 ID=mRNA_C-tenellus_contig7729.2.1|Name=mRNA_C-tenellus_contig7729.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1095bp|location=Sequence derived from alignment at C-tenellus_contig7729:5425..6519- (Choristocarpus tenellus KU2346)
GCTCTCATCCAACTAAATAGTGTGAGCGTGGCAAAGGCCACCTTCCGCCA
CTTTACTGAGGATGAGGAACCACGTGTGGGCATCCGTCGGGTGTATGTCA
ACTACTCGCGTTCACAATCCATGGAGATAAGGGAGGGAAGTGACAGTAAT
GGGACAGACTTCACACGAGGGGACAACAATGTTGCTGTTGGGGCGACACC
TGCAATTCAGGTTTCTATATACTTCTGATAAGAGTCTGTCTAAACGCTCC
CTCTAGAATGGAACAGGTGCTCCAGCAGAGATTACTTCTTATGCATGTAT
GTGTAGTGCATATATACATATAGGCGTGTGTTTTTGACAAGCATAGACGA
TAGTTTAGCTCCCTGGTTCCTTAAACATTGACTCTGTGACAGGCAATGCC
GTGGAGGGTTGGATAACATCATATCCAGTCCAGATTACGTAACTACATCT
GCCACTATTGTCATGTGTCATTGAGGTATCTTCTACCTCATACGTATTAT
TTCTCCCATGATCCATTTATGGTGACAAGGAAAAACATGTTAAAAATACT
TTTTGCCGCCAAAAAAGTCCATGCTTGGGCTCAGGTTATCTCATGTGCAT
GTGTGTGTGTGTGCACGCTCAAGTATGTGGACTGACTCCCAGTACTCCAT
GCACTTTCTGTTTCCTCCTTTTTCCCCTTAACTGCAGGATACCTCAAATC
GGTATGCTCATCTCATCTTGGAAGACCACTCCAAGCTCGTTGGTCTTGCA
ACTGCCTACCTCCAAAAGTATGGGTCAGTGGAAGAGATGAAACCAGCTTT
GGTAGAGGGACGAGGGGTCCCAAATGCGCTGTGCTGAGAACCAAGCTGAT
TGTAAATCAAGAATTTGAGAGGCTTGCCTCAGACAAAGTAGTGCTAAAAC
TAGTTTGTGAAGAGCTTGTGGCAACCAAAGTCAGGACAAGTGAACAACAA
AATCCATGGCAGACCTTGAAATTACCCTTGGAAATGCCTTGACCTTACCA
GGATCACTGGGGGGGAAGGAGCGATCTTGAATATCCATCAGAGAGAGGAG
ATGTCAGAGTACCTCAGGCATAGTAATAGCAGCTCTGCAGCAGTA
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Coding sequence (CDS) from alignment at C-tenellus_contig7729:5425..6519-

>mRNA_C-tenellus_contig7729.2.1 ID=mRNA_C-tenellus_contig7729.2.1|Name=mRNA_C-tenellus_contig7729.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=390bp|location=Sequence derived from alignment at C-tenellus_contig7729:5425..6519- (Choristocarpus tenellus KU2346)
GCTCTCATCCAACTAAATAGTGTGAGCGTGGCAAAGGCCACCTTCCGCCA
CTTTACTGAGGATGAGGAACCACGTGTGGGCATCCGTCGGGTGTATGTCA
ACTACTCGCGTTCACAATCCATGGAGATAAGGGAGGGAAGTGACAGTAAT
GGGACAGACTTCACACGAGGGGACAACAATGTTGCTGTTGGGGCGACACC
TGCAATTCAGGATACCTCAAATCGGTATGCTCATCTCATCTTGGAAGACC
ACTCCAAGCTCGTTGGTCTTGCAACTGCCTACCTCCAAAAGTATGGGATC
ACTGGGGGGGAAGGAGCGATCTTGAATATCCATCAGAGAGAGGAGATGTC
AGAGTACCTCAGGCATAGTAATAGCAGCTCTGCAGCAGTA
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