mRNA_C-tenellus_contig771.1.2 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig771.1.2
Unique NamemRNA_C-tenellus_contig771.1.2
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig771.1.2 vs. uniprot
Match: D7G6P5_ECTSI (Peptidyl-prolyl cis-trans isomerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6P5_ECTSI)

HSP 1 Score: 284 bits (726), Expect = 1.170e-88
Identity = 139/201 (69.15%), Postives = 163/201 (81.09%), Query Frame = 1
Query:  232 MHRLASLALTLAVIIG-VALGAELKEITHKVFFDIEIGGEAAGRITMGLYGNAVPKTVENFRALCTGEKGVGEVYNKPLHYKGSSFHRVIPQFMLQGGDFTHGTGTGGESIYGGKFDDEAFPVRLMHEGPGTLSMANAGRNTNGSQFFICTVKTPWLDGKHVVFGTVRVIDGMDVVKAIEAKGSRSGSTSATVVIADSGEL 831
            M    +L L +A + G V+  A++ ++TH+V+FDI IGG  AGRITMGL+GNAVPKTVENFR LCTGE G G+VY KPLHYKGS+FHRVIPQFMLQGGDFTHGTGTGGESIYGGKFDDEAFP  L+H+ PG LSMAN+G++TNGSQFFICTV TPWL+GKHV+FG V   + M++V  IE  GSRSG+ S  V I DSGEL
Sbjct:    1 MKIFQALILGMATVAGTVSADADVTDVTHRVYFDISIGGTEAGRITMGLFGNAVPKTVENFRQLCTGEAGPGKVYRKPLHYKGSAFHRVIPQFMLQGGDFTHGTGTGGESIYGGKFDDEAFPPELIHDKPGVLSMANSGKDTNGSQFFICTVPTPWLNGKHVIFGQVEE-ESMELVSRIEKLGSRSGALSEKVEITDSGEL 200          
BLAST of mRNA_C-tenellus_contig771.1.2 vs. uniprot
Match: A0A835ZLK1_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZLK1_9STRA)

HSP 1 Score: 282 bits (721), Expect = 6.260e-88
Identity = 141/194 (72.68%), Postives = 158/194 (81.44%), Query Frame = 1
Query:  250 LALTLAVIIGVALGAELKEITHKVFFDIEIGGEAAGRITMGLYGNAVPKTVENFRALCTGEKGVGEVYNKPLHYKGSSFHRVIPQFMLQGGDFTHGTGTGGESIYGGKFDDEAFPVRLMHEGPGTLSMANAGRNTNGSQFFICTVKTPWLDGKHVVFGTVRVIDGMDVVKAIEAKGSRSGSTSATVVIADSGEL 831
            LAL L  +  V   A +  +T  VFFD+EI G+  GRI MGLYG AVPKTVENFRALCTGEKGVG+VY+KPL YKGSSFHR+IPQFMLQGGDFTHGTGTGGESIYGGKFDDEAFP  L H+ PG LSMANAG NTNGSQFFI TV TPWLDGKHV+FG  +V++GMDVVK+IE  GS+SG   A V +ADSGE+
Sbjct:    7 LALVLCAVSSVM--AAVDSVTKMVFFDMEIDGKPGGRIVMGLYGEAVPKTVENFRALCTGEKGVGKVYHKPLTYKGSSFHRIIPQFMLQGGDFTHGTGTGGESIYGGKFDDEAFPKELKHKEPGMLSMANAGPNTNGSQFFITTVATPWLDGKHVIFG--KVLEGMDVVKSIEKLGSQSGRPQAKVKVADSGEI 196          
BLAST of mRNA_C-tenellus_contig771.1.2 vs. uniprot
Match: T0S954_SAPDV (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0S954_SAPDV)

HSP 1 Score: 266 bits (679), Expect = 1.180e-81
Identity = 135/197 (68.53%), Postives = 156/197 (79.19%), Query Frame = 1
Query:  241 LASLALTLAVIIGVALGAELKEITHKVFFDIEIGGEAAGRITMGLYGNAVPKTVENFRALCTGEKGVGEVYNKPLHYKGSSFHRVIPQFMLQGGDFTHGTGTGGESIYGGKFDDEAFPVRLMHEGPGTLSMANAGRNTNGSQFFICTVKTPWLDGKHVVFGTVRVIDGMDVVKAIEAKGSRSGSTSATVVIADSGEL 831
            L  L L    ++G+A+GA+  +IT++V+FDI+IG   AGR+ MGLYG   PKTVENFRALCTGEKG G    KPL YK S+FHR+IP FM+QGGDFTHGTGTGGESIYG +FDDE F  +L HEGPGTLSMANAG N+NGSQFFICTVKT WLDG+HVVFG  RVI GMDVVKA+E  GS SG+ S  V IA+SGEL
Sbjct:    3 LKLLTLVALALVGMAVGAKSPKITNQVYFDIKIGNRDAGRVVMGLYGKTTPKTVENFRALCTGEKGTG-TKGKPLWYKDSAFHRIIPDFMIQGGDFTHGTGTGGESIYGDRFDDENF--KLKHEGPGTLSMANAGPNSNGSQFFICTVKTSWLDGRHVVFG--RVISGMDVVKAVEKIGSGSGTPSERVTIANSGEL 194          
BLAST of mRNA_C-tenellus_contig771.1.2 vs. uniprot
Match: A0A2P6VIM7_9CHLO (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VIM7_9CHLO)

HSP 1 Score: 265 bits (676), Expect = 4.450e-81
Identity = 140/198 (70.71%), Postives = 159/198 (80.30%), Query Frame = 1
Query:  238 RLASLALTLAVIIGVALGAELKEITHKVFFDIEIGGEAAGRITMGLYGNAVPKTVENFRALCTGEKGVGEVYNKPLHYKGSSFHRVIPQFMLQGGDFTHGTGTGGESIYGGKFDDEAFPVRLMHEGPGTLSMANAGRNTNGSQFFICTVKTPWLDGKHVVFGTVRVIDGMDVVKAIEAKGSRSGSTSATVVIADSGEL 831
            R A L L LA+    A  A+   IT+KVFFD+EI G+ AGRI MGL+G  VPKTVENFRALCTGEKGVG+   KPLHYKGS FHRVIPQFMLQGGDFTHGTGTGGESIYG KF DE F  +L H+GPG LSMANAG +TNGSQFFI TVKT WLDG+HVVFG  +VI+G+DVV  +EA+GS+SG T + V+IADSGEL
Sbjct:    5 RSALLTLALALFAASA-AAKGPAITNKVFFDVEIDGKPAGRIVMGLFGKTVPKTVENFRALCTGEKGVGKS-GKPLHYKGSVFHRVIPQFMLQGGDFTHGTGTGGESIYGEKFADENF--KLKHKGPGYLSMANAGADTNGSQFFITTVKTAWLDGRHVVFG--KVIEGLDVVYKVEAEGSQSGKTKSKVIIADSGEL 196          
BLAST of mRNA_C-tenellus_contig771.1.2 vs. uniprot
Match: I6Y9L2_LINUS (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Linum usitatissimum TaxID=4006 RepID=I6Y9L2_LINUS)

HSP 1 Score: 264 bits (675), Expect = 5.110e-81
Identity = 136/193 (70.47%), Postives = 154/193 (79.79%), Query Frame = 1
Query:  259 TLAVIIGVALGAELKEITHKVFFDIEIGGEAAGRITMGLYGNAVPKTVENFRALCTGEKGVGEVYNKPLHYKGSSFHRVIPQFMLQGGDFTHGTGTGGESIYGGKFDDEAFPVRLMHEGPGTLSMANAGRNTNGSQFFICTVKTPWLDGKHVVFGTVRVIDGMDVVKAIEAKGSRSGSTSATVVIADSGEL*L 837
            TLA+I       +LKEITHKV+FD+EI G+ AGRITMGLYG AVPKT ENFRALCTGEKGVG+   KPLHYKGSSFHR+IP FMLQGGDFTHG G GGESIYG KF DE F  +L H GPG LSMANAG++TNGSQFFI TV T WLDG+HVVFG  +V+ GMDVV  +EA+G +SG+  + VVI DSGEL L
Sbjct:   19 TLALIQAKKSDEKLKEITHKVYFDVEIDGKPAGRITMGLYGKAVPKTAENFRALCTGEKGVGKS-GKPLHYKGSSFHRIIPSFMLQGGDFTHGDGRGGESIYGEKFADENF--KLKHTGPGLLSMANAGKDTNGSQFFITTVTTSWLDGRHVVFG--KVLSGMDVVYKVEAEGKQSGTPKSKVVIVDSGELPL 206          
BLAST of mRNA_C-tenellus_contig771.1.2 vs. uniprot
Match: A0A7S1FIF5_NOCSC (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1FIF5_NOCSC)

HSP 1 Score: 263 bits (673), Expect = 5.870e-81
Identity = 133/180 (73.89%), Postives = 147/180 (81.67%), Query Frame = 1
Query:  292 AELKEITHKVFFDIEIGGEAAGRITMGLYGNAVPKTVENFRALCTGEKGVGEVYNKPLHYKGSSFHRVIPQFMLQGGDFTHGTGTGGESIYGGKFDDEAFPVRLMHEGPGTLSMANAGRNTNGSQFFICTVKTPWLDGKHVVFGTVRVIDGMDVVKAIEAKGSRSGSTSATVVIADSGEL 831
            AE  ++THKVFFDI + GE AGRI MGLYG+ VPKTVENFRALCTGEKGVG+   KPLHYKGS FHRVIP FMLQGGDFTHGTGTGGESIYG KF+DE F  +L H  PG LSMANAG+NTNGSQFFI TV T WLDGKHVVFG   V++GMD+V+ +EA GS+SG TS  V I DSGEL
Sbjct:   16 AEDPKVTHKVFFDITLDGEDAGRIVMGLYGDVVPKTVENFRALCTGEKGVGKS-GKPLHYKGSKFHRVIPNFMLQGGDFTHGTGTGGESIYGSKFNDENF--QLKHTAPGKLSMANAGKNTNGSQFFITTVTTSWLDGKHVVFG--EVLEGMDIVQKVEAVGSQSGKTSKLVEIKDSGEL 190          
BLAST of mRNA_C-tenellus_contig771.1.2 vs. uniprot
Match: A0A7S2WPF7_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WPF7_9STRA)

HSP 1 Score: 264 bits (674), Expect = 6.710e-81
Identity = 132/189 (69.84%), Postives = 152/189 (80.42%), Query Frame = 1
Query:  265 AVIIGVALGAELKEITHKVFFDIEIGGEAAGRITMGLYGNAVPKTVENFRALCTGEKGVGEVYNKPLHYKGSSFHRVIPQFMLQGGDFTHGTGTGGESIYGGKFDDEAFPVRLMHEGPGTLSMANAGRNTNGSQFFICTVKTPWLDGKHVVFGTVRVIDGMDVVKAIEAKGSRSGSTSATVVIADSGEL 831
            A+ +  A  A   ++THKVFFD+EIGG+ AGR+ MGL+G+ VPKTVENFRAL TGEKG G+   KPLH+KGS FHRVIP FM+QGGDFT G G GGESIYG KF DE F   L H GPG LSMANAG +TNGSQFFICTVKTPWLDG+HVVFG   V++GMDV+K IE KGSRSG+ SAT+VI+DSGEL
Sbjct:   18 ALFLAPACDAAQAKVTHKVFFDVEIGGQPAGRVVMGLFGDVVPKTVENFRALATGEKGKGQS-GKPLHFKGSKFHRVIPNFMIQGGDFTMGNGHGGESIYGPKFKDENF--NLKHTGPGILSMANAGPDTNGSQFFICTVKTPWLDGRHVVFG--EVLEGMDVIKTIEGKGSRSGAPSATLVISDSGEL 201          
BLAST of mRNA_C-tenellus_contig771.1.2 vs. uniprot
Match: A0A8J5M048_ZINOF (PPIase cyclophilin-type domain-containing protein n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5M048_ZINOF)

HSP 1 Score: 263 bits (671), Expect = 2.000e-80
Identity = 141/211 (66.82%), Postives = 161/211 (76.30%), Query Frame = 1
Query:  229 MMHRLAS------LALTLAVIIGVALGAE--LKEITHKVFFDIEIGGEAAGRITMGLYGNAVPKTVENFRALCTGEKGVGEVYNKPLHYKGSSFHRVIPQFMLQGGDFTHGTGTGGESIYGGKFDDEAFPVRLMHEGPGTLSMANAGRNTNGSQFFICTVKTPWLDGKHVVFGTVRVIDGMDVVKAIEAKGSRSGSTSATVVIADSGEL*L 837
            M  R+AS      L  T AV+   A  ++  LKE+THKV+FD+EIGG+ AGRI MGL+G  VPKT ENFRALCTGEKGVG+   KPLH+KGSSFHR+IP FM+QGGDFTHG G GGESIYG KF DE F  +L H GPG LSMANAGR+TNGSQFFI TV T WLDGKHVVFG  +VI GMDVV  IEA+G ++GS  + VVIADSGEL L
Sbjct:    1 MTQRMASFWLRWVLLFTAAVVFVQAKASQESLKEVTHKVYFDVEIGGKPAGRIVMGLFGKTVPKTAENFRALCTGEKGVGKS-GKPLHFKGSSFHRIIPSFMIQGGDFTHGNGMGGESIYGTKFADENF--KLKHTGPGHLSMANAGRDTNGSQFFITTVTTSWLDGKHVVFG--KVISGMDVVYKIEAEGRQNGSPKSQVVIADSGELPL 206          
BLAST of mRNA_C-tenellus_contig771.1.2 vs. uniprot
Match: UPI001F5D2617 (peptidyl-prolyl cis-trans isomerase CYP19-4-like isoform X1 n=4 Tax=Lolium rigidum TaxID=89674 RepID=UPI001F5D2617)

HSP 1 Score: 263 bits (671), Expect = 3.090e-80
Identity = 129/182 (70.88%), Postives = 150/182 (82.42%), Query Frame = 1
Query:  292 AELKEITHKVFFDIEIGGEAAGRITMGLYGNAVPKTVENFRALCTGEKGVGEVYNKPLHYKGSSFHRVIPQFMLQGGDFTHGTGTGGESIYGGKFDDEAFPVRLMHEGPGTLSMANAGRNTNGSQFFICTVKTPWLDGKHVVFGTVRVIDGMDVVKAIEAKGSRSGSTSATVVIADSGEL*L 837
            A+L ++THKVFFDIEI G+ AGR+ MGL+GNAVPKT ENFRALCTGEKG+G+   KPLHYKGSSFHR+IP FM+QGGDFTHG G GGESIYG KF DE F  +L H GPG LSMANAG++TNGSQFFI TV T WLDGKHVVFG  +VI GMDV+  +EA+G +SG+  + VV+ADSGEL L
Sbjct:   43 ADLSKVTHKVFFDIEIDGKPAGRVVMGLFGNAVPKTAENFRALCTGEKGIGKS-GKPLHYKGSSFHRIIPSFMIQGGDFTHGNGMGGESIYGTKFADENF--KLKHTGPGYLSMANAGKDTNGSQFFITTVTTSWLDGKHVVFG--KVISGMDVIYKVEAEGKQSGTPKSKVVVADSGELPL 219          
BLAST of mRNA_C-tenellus_contig771.1.2 vs. uniprot
Match: D8S966_SELML (Peptidyl-prolyl cis-trans isomerase n=2 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8S966_SELML)

HSP 1 Score: 261 bits (668), Expect = 5.180e-80
Identity = 130/180 (72.22%), Postives = 146/180 (81.11%), Query Frame = 1
Query:  298 LKEITHKVFFDIEIGGEAAGRITMGLYGNAVPKTVENFRALCTGEKGVGEVYNKPLHYKGSSFHRVIPQFMLQGGDFTHGTGTGGESIYGGKFDDEAFPVRLMHEGPGTLSMANAGRNTNGSQFFICTVKTPWLDGKHVVFGTVRVIDGMDVVKAIEAKGSRSGSTSATVVIADSGEL*L 837
            L+EITHKVFFD+EIGG+ AGR+ MGLYG AVPKT ENFRALCTGEKG G    K LH+KGS+FHR+IP FM+QGGDFTHG G GGESIYG KF DE F  +L H GPG LSMANAG NTNGSQFFI TVKT WLDGKHVVFG  +VI GMD+V  +EA+GS+SG+  + V IADSGEL L
Sbjct:   30 LEEITHKVFFDVEIGGKPAGRVVMGLYGKAVPKTAENFRALCTGEKGTGS-QGKALHFKGSAFHRIIPSFMIQGGDFTHGNGMGGESIYGTKFADENF--KLKHTGPGVLSMANAGSNTNGSQFFITTVKTSWLDGKHVVFG--KVISGMDIVYKVEAEGSQSGAPKSKVTIADSGELPL 204          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig771.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6P5_ECTSI1.170e-8869.15Peptidyl-prolyl cis-trans isomerase n=2 Tax=Ectoca... [more]
A0A835ZLK1_9STRA6.260e-8872.68Peptidyl-prolyl cis-trans isomerase n=1 Tax=Tribon... [more]
T0S954_SAPDV1.180e-8168.53Peptidyl-prolyl cis-trans isomerase n=1 Tax=Saprol... [more]
A0A2P6VIM7_9CHLO4.450e-8170.71Peptidyl-prolyl cis-trans isomerase n=1 Tax=Micrac... [more]
I6Y9L2_LINUS5.110e-8170.47Peptidyl-prolyl cis-trans isomerase n=1 Tax=Linum ... [more]
A0A7S1FIF5_NOCSC5.870e-8173.89Peptidyl-prolyl cis-trans isomerase n=1 Tax=Noctil... [more]
A0A7S2WPF7_9STRA6.710e-8169.84Peptidyl-prolyl cis-trans isomerase n=1 Tax=Rhizoc... [more]
A0A8J5M048_ZINOF2.000e-8066.82PPIase cyclophilin-type domain-containing protein ... [more]
UPI001F5D26173.090e-8070.88peptidyl-prolyl cis-trans isomerase CYP19-4-like i... [more]
D8S966_SELML5.180e-8072.22Peptidyl-prolyl cis-trans isomerase n=2 Tax=Selagi... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig771contigC-tenellus_contig771:2468..5956 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G6P5
PFAMsPro_isomerase
Model size1996
Max annot lvl2759|Eukaryota
KEGG koko:K01802
Hectar predicted targeting categorysignal peptide
GOsGO:0000413,GO:0003674,GO:0003755,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016853,GO:0016859,GO:0018193,GO:0018208,GO:0019538,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0071704,GO:0140096,GO:1901564
Exons5
Evalue3.33e-95
EggNOG OGsCOG0652@1|root,KOG0865@2759|Eukaryota
Ec32 ortholog descriptionCyclophilin-type peptidyl-prolyl cis-trans isomerase domain
Ec32 orthologEc-26_000140.1
EC5.2.1.8
Descriptionpeptidyl-prolyl cis-trans isomerase activity
Cds size606
COG categoryO
BRITEko00000,ko01000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig771.1.2prot_C-tenellus_contig771.1.2Choristocarpus tenellus KU2346polypeptideC-tenellus_contig771 3630..5728 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790053.4135065-UTR-C-tenellus_contig771:2467..36291680790053.4135065-UTR-C-tenellus_contig771:2467..3629Choristocarpus tenellus KU2346UTRC-tenellus_contig771 2468..3629 -
1680790053.4917884-UTR-C-tenellus_contig771:5728..59561680790053.4917884-UTR-C-tenellus_contig771:5728..5956Choristocarpus tenellus KU2346UTRC-tenellus_contig771 5729..5956 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790053.4307199-CDS-C-tenellus_contig771:3629..37311680790053.4307199-CDS-C-tenellus_contig771:3629..3731Choristocarpus tenellus KU2346CDSC-tenellus_contig771 3630..3731 -
1680790053.446458-CDS-C-tenellus_contig771:4305..44371680790053.446458-CDS-C-tenellus_contig771:4305..4437Choristocarpus tenellus KU2346CDSC-tenellus_contig771 4306..4437 -
1680790053.4560637-CDS-C-tenellus_contig771:4714..49011680790053.4560637-CDS-C-tenellus_contig771:4714..4901Choristocarpus tenellus KU2346CDSC-tenellus_contig771 4715..4901 -
1680790053.466575-CDS-C-tenellus_contig771:5137..52441680790053.466575-CDS-C-tenellus_contig771:5137..5244Choristocarpus tenellus KU2346CDSC-tenellus_contig771 5138..5244 -
1680790053.4795249-CDS-C-tenellus_contig771:5650..57281680790053.4795249-CDS-C-tenellus_contig771:5650..5728Choristocarpus tenellus KU2346CDSC-tenellus_contig771 5651..5728 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig771.1.2

>prot_C-tenellus_contig771.1.2 ID=prot_C-tenellus_contig771.1.2|Name=mRNA_C-tenellus_contig771.1.2|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=202bp
MMHRLASLALTLAVIIGVALGAELKEITHKVFFDIEIGGEAAGRITMGLY
GNAVPKTVENFRALCTGEKGVGEVYNKPLHYKGSSFHRVIPQFMLQGGDF
THGTGTGGESIYGGKFDDEAFPVRLMHEGPGTLSMANAGRNTNGSQFFIC
TVKTPWLDGKHVVFGTVRVIDGMDVVKAIEAKGSRSGSTSATVVIADSGE
L*
back to top

mRNA from alignment at C-tenellus_contig771:2468..5956-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig771.1.2 ID=mRNA_C-tenellus_contig771.1.2|Name=mRNA_C-tenellus_contig771.1.2|organism=Choristocarpus tenellus KU2346|type=mRNA|length=3489bp|location=Sequence derived from alignment at C-tenellus_contig771:2468..5956- (Choristocarpus tenellus KU2346)
TTGGATTACTTATCTGGGGATCTGGAGTCTTGTCCCGCACCAGGATCACT GATTTAAATGGAAATATCTTTGGAAACTTTAGTGAGGATGATGGATGGAA TGGGAGGTGCTTCCGAATGTCAACATGTGGTAATGTCTCCACTGGTCCCC TTTTCTGATCAATTGATACCCTTTGTTCCTACCCCTTGATCTGATCCTTC AAGGTGTGTTTCTTCCAGAAAAATCATCATGATGCACCGGCTGGCTTCTC TTGCCTTGACTCTAGCAGTCATCATCGGCGTCGCCTTGGGGGCTGAGCTA AAAGAGGTAGATCTAGTTATACAACATAGGAAAACAAGGTATTGTGGTGA TAGGAAATATTGGGAGTGATTCATAATATCCGACTGGTGAAATATCTTCT TCTGTTGTCTCAGCGTGTATAGTGTTGTGCTATAGGTTTGACAGTCTTGC TTTGCATCCAGTCCTCTCAATTCAGATTCAATCATTGGAACGAACAATTT GTTGGATTTGGCACCCCAAATCCTGGGTCGCTCCTTTTAAACACCTTTTT AGGCCCAGTTTCTCTCTCGATTTCTTGTGGTGTACTGTTTTTAATTTCGA TATTTGAATGTGTAGATGTAGCACGGTGAGGATAAGATTCAGATGGATTC GTGGCGCGCATTGCAAGGAGAATTGTGCCAACTTTGCCAAGCCATTGTGA CCTTCACCACAGATCACCCACAAGGTCTTCTTCGACATCGAAATCGGTGG CGAGGCCGCAGGGCGCATTACTATGGGACTTTACGGGAATGCCGTCCCGA AGACGGTGGAAAACTTCCGGTGAGCTGCTATTCGAGGAAGTGTGAATTTG TGCTGACGACCCCACGGGATAGGATACATCTTTTCGCCGAAACTAGCCTA GTACAACATTTGTGCGGTTCAACCTCGTCTCTTCCAGATAACAATCAACG AAAGCTCTTCCACAAAGATAAACCTCCCTTCACTAACCACTGAATTCATG CTTGTGTGTACCTTTACCCTCCTCTTCACTCCTCATCATCTCCTACCTTT CGCAGGGCACTCTGCACGGGAGAGAAGGGTGTGGGTGAGGTCTACAACAA GCCGCTCCACTACAAGGGCTCGTCCTTCCACCGTGTCATCCCCCAGTTCA TGCTCCAGGGGGGGGACTTCACGCATGGCACCGGGACAGGCGGGGAGTCC ATCTATGGAGGGAAGTTTGATGACGAAGCCTTCCCGGTGAGAGTAATAAG GTTTTTGATTAGACTTTTTTTATATGTTTATTAAACTTATATTCACCATA GGCTCTTGCCCCAACCAGGCTTCATCATTGTGGTCAAATGAATAGTTTTA AGTTGATTTCGCTTCAACAGGGAATATTACGAAACTGCCATTGTTGCACC ATCTTCAATGTTGCTAAACATGCCCTGACGCTCTCCCCACTTCTCCCTTC CACATCCAACTACCGCTGTACACGTTTGCGATGGTGTGGTTAATTGTGTT TCATGTGATGACATGGCAGCTGATGCATGAGGGGCCTGGAACGCTATCTA TGGCCAATGCTGGCAGGAACACTAATGGCAGTCAGTTTTTCATTTGCACT GTCAAGACACCGTGGTTGGATGGGAAGCATGTTGTCTTCGGCACGGTGAG GGTTTGTTATGACTGCCAACATCAACAGATTGGATCTCCCCACCACCACC ACCACTATGTAATGCTTGTGTTTGTCTTTTGTACTCTCTTGTCTTCATCT GTTGAGAGGTTGACGTGCTTGGGTGGAATTGTGGTGATCGTTTGCAAGGC CATGCCATGCCATATGTTGGCACCCGTAGTTAGCTTCACCTCTCTTCTTT TGAGTCACAGTAGTAGTCATGCTTGATTTCTCCATTTTTTAAATAATGGC AGGTGGTAAAGATTGAGGTTGCCTATTTGTGAGTACATTTGGGGGTTGGT GTTGTGATGAGAAGATAACAGAGTAATATGTGCTCTCTGTTCCAGCCTCG TAGGTGTTGCTTCCCTTGGTGACTAAGAACTACTCTAATACAGAGCTCAA CAACTGATAAATTTCCCTATCTCTATAGTGAGATGGTCATGAGCATGTCC TTTCAACCACCTTGCCTCAAAGGGAGAGCATAAAGCATCCTCACTTTGCT CCCCTACTCCCCTTCTTTCCCGACTGCTGCCTTGCATGTATTGCGGACCT CTGCCTAATCTATTCTATGGTATAGGTCATTGATGGTATGGATGTGGTGA AGGCCATTGAGGCCAAGGGAAGCAGGAGTGGAAGTACCTCAGCAACTGTG GTGATCGCCGACTCTGGCGAGCTTTGATTGACTTAGCATCCAAAACGGAT TGCAAGAACTCCCCGACCCTTCCAAGGGTTAGCAACAGCAGTTGTGTAGC ATCCAACCTTGTGCTACGGTTGACATCTGCTTAATTGTTGAGGTTGAGAT ATATTTGCCTTGTACATCATGTCAGGTGCAACGTTTGACCAGGCTTTATG TGTGTGTTTGTTTTGTTGTTCATGCCCAACTGATGTTGTGATCCCCATAC AATGGGTCTAGGAAGACCGTGTCAGAGAGATTTCTAGGCCGATCATTGTT TGCTCGTCACAGACCACAGATCGACAAAGTAGCTACAATGTTTTTGAATA ATCCTGACAGTAACAAAGGGTAGGTGTTGTACTAGAATGGCAATAAGAAC ACTACAAAAATATAGGAATATTTATCCATACATACTCCTTAACGAAGGGC AATGATAATATATGCCGAGTAGACAAAAGAACATGGGTCTCTCCACAAGG GCAGAGTCACAAAAACTTATCGACCATAACCATATACAAGGCAAAAACAT GGAATTGCACTTGTGGAGGGAAGTTGCAGGTGGGAAAGGGAAAGAGAGTA GGCAAAGGTATCCATATTTAGTGCAACTTGAGACTCTGCATAAATGCTTG AAGGAATGATTGCTTTCACATTTGGAAGTTAATATCCACATGTGTGGGCT GATTTGCACAGTTACATGTGCTTATCCTTCTTCAGTGCTAAGTCCCAGCA AGTGAAAGTATCTTAAAGGGTACGAGTTTTGCCCTGATTTTGTCCATTTG GGGCTTAGCTTCTCATGGGTTTTGAGGACATTCTACCTACTCCAAGATGT TTCAGAGTAGGTAAAGTGTATACGTTACGAAGATGTGTGCCCGGAAGGAT ATTGGCACTTCCTAACAAACAAGATAGCCATAATTTCATAAAGATGGCAA CATTGGATTTTGACCCCCAAATGGATATGCTATACCCTCTAAGATACTTT GACTCAGCCTAAATTCCATTCTACTGTCACCATGTTAGCTAAAAAAGAAA TGCAGAGCAAGATTACTGCAAGGTTGGAGGTGGAAATGACATTTTCATGT TCAAGCCAAGGTGAATGAAGTTTGCTTATTGAGTAATTATGACAAAATGC TACAGTGTGTGTGTGTAGGACTGCCTGAATGCAAGGAGG
back to top

Coding sequence (CDS) from alignment at C-tenellus_contig771:2468..5956-

>mRNA_C-tenellus_contig771.1.2 ID=mRNA_C-tenellus_contig771.1.2|Name=mRNA_C-tenellus_contig771.1.2|organism=Choristocarpus tenellus KU2346|type=CDS|length=606bp|location=Sequence derived from alignment at C-tenellus_contig771:2468..5956- (Choristocarpus tenellus KU2346)
ATGATGCACCGGCTGGCTTCTCTTGCCTTGACTCTAGCAGTCATCATCGG
CGTCGCCTTGGGGGCTGAGCTAAAAGAGATCACCCACAAGGTCTTCTTCG
ACATCGAAATCGGTGGCGAGGCCGCAGGGCGCATTACTATGGGACTTTAC
GGGAATGCCGTCCCGAAGACGGTGGAAAACTTCCGGGCACTCTGCACGGG
AGAGAAGGGTGTGGGTGAGGTCTACAACAAGCCGCTCCACTACAAGGGCT
CGTCCTTCCACCGTGTCATCCCCCAGTTCATGCTCCAGGGGGGGGACTTC
ACGCATGGCACCGGGACAGGCGGGGAGTCCATCTATGGAGGGAAGTTTGA
TGACGAAGCCTTCCCGGTGAGACTGATGCATGAGGGGCCTGGAACGCTAT
CTATGGCCAATGCTGGCAGGAACACTAATGGCAGTCAGTTTTTCATTTGC
ACTGTCAAGACACCGTGGTTGGATGGGAAGCATGTTGTCTTCGGCACGGT
GAGGGTCATTGATGGTATGGATGTGGTGAAGGCCATTGAGGCCAAGGGAA
GCAGGAGTGGAAGTACCTCAGCAACTGTGGTGATCGCCGACTCTGGCGAG
CTTTGA
back to top