mRNA_C-tenellus_contig7703.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7703.2.1
Unique NamemRNA_C-tenellus_contig7703.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig7703.2.1 vs. uniprot
Match: A0A6H5JF50_9PHAE (LNR domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF50_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 5.330e-28
Identity = 60/132 (45.45%), Postives = 85/132 (64.39%), Query Frame = 1 
Query:   16 FENDNLATVTR-VDIGTLDCDSLRLAESASELQFTISSTEDVLVLQASFEVLSENIFTDGKSRKVWMGTIVNTTAENITTYPRMFSMTWTDDCDVETFLLKIITPTSAGYTSIIKSVPCAAGGDKDICIIEV 408
             E D L  V   +++G L CDSL  A  +S L+FTISSTE V+  + S+  +  N+  DG +RK W+G +V+    +  + PR  SMTWTD CD+ETFLLK+++  S G TSI  SVPC+AG   +IC++E+
Sbjct:  159 LETDELTAVMGDIELGDLLCDSLEDATDSSLLRFTISSTETVIAERTSYSSIDGNVLPDGNARKTWLGEVVDP-EPSTNSIPRTVSMTWTDPCDIETFLLKLVSRNSDGSTSIATSVPCSAGSSSEICMVEL 289
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BLAST of mRNA_C-tenellus_contig7703.2.1 vs. uniprot
Match: D8LLU0_ECTSI (PKD domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLU0_ECTSI)

HSP 1 Score: 112 bits (281), Expect = 5.100e-27
Identity = 57/134 (42.54%), Postives = 88/134 (65.67%), Query Frame = 1 
Query:   10 SSFENDNLATVT-RVDIGTLDCDSLRLAESASELQFTISSTEDVLVLQASFEVLSENIFTDGKSRKVWMGTIVNTTAENITTYPRMFSMTWTDDCDVETFLLKIITPTSAGYTSIIKSVPCAAGGDKDICIIEV 408
            ++ E+D  ATV   + +G L CDSL  A  ++ L+F ISSTE V+  + S+  +  NIF DG++RK WMG +V+       + PR  SMTWT+ C VE+FLL +++  + G TSI++S+PCAAG   ++C++E+
Sbjct:   69 AALESDPQATVVVHIGLGELLCDSLEDASDSTLLRFNISSTETVIAERTSYSSIDGNIFPDGETRKTWMGEVVDPEPP-AGSAPRTVSMTWTNPCGVESFLLTVVSHNNDGSTSIVRSIPCAAGSSSEVCMVEL 201
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BLAST of mRNA_C-tenellus_contig7703.2.1 vs. uniprot
Match: A0A6H5JRC1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRC1_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 4.620e-13
Identity = 37/108 (34.26%), Postives = 63/108 (58.33%), Query Frame = 1 
Query:  124 STEDVLVLQASFEVLSENIFTDGKSRK-------------VWMGTIVNTTAENITTYPRMFSMTWTDDCDVETFLLKIITPTSAGYTSIIKSVPCAAGGDKDICIIEV 408
            +++ V+  + S+  +  ++ +DG +RK              W+G +V+    +  + PR  SMTWTD CD E+FLLK+++  + G TSI  SVPC+AG   +IC++E+
Sbjct:    5 TSQTVIAERTSYSSIDGSVLSDGITRKDELTGDGSHGLFQTWLGEVVDP-EPSANSIPRTVSMTWTDPCDTESFLLKLVSRNADGSTSIFTSVPCSAGSSNEICMVEL 111
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7703.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JF50_9PHAE5.330e-2845.45LNR domain-containing protein n=2 Tax=Ectocarpus s... [more]
D8LLU0_ECTSI5.100e-2742.54PKD domain protein n=1 Tax=Ectocarpus siliculosus ... [more]
A0A6H5JRC1_9PHAE4.620e-1334.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7703contigC-tenellus_contig7703:3188..5789 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LC56
PFAMsReprolysin_3,Reprolysin_4
Model size415
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons5
Evalue8.98e-07
EggNOG OGs2E79G@1|root,2SDWE@2759|Eukaryota
DescriptionMetallo-peptidase family M12B Reprolysin-like
Cds size414
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790053.1956291-CDS-C-tenellus_contig7703:3187..32271680790053.1956291-CDS-C-tenellus_contig7703:3187..3227Choristocarpus tenellus KU2346CDSC-tenellus_contig7703 3188..3227 +
1680790053.2079859-CDS-C-tenellus_contig7703:3616..37081680790053.2079859-CDS-C-tenellus_contig7703:3616..3708Choristocarpus tenellus KU2346CDSC-tenellus_contig7703 3617..3708 +
1680790053.2178013-CDS-C-tenellus_contig7703:4531..46031680790053.2178013-CDS-C-tenellus_contig7703:4531..4603Choristocarpus tenellus KU2346CDSC-tenellus_contig7703 4532..4603 +
1680790053.2269409-CDS-C-tenellus_contig7703:5259..53551680790053.2269409-CDS-C-tenellus_contig7703:5259..5355Choristocarpus tenellus KU2346CDSC-tenellus_contig7703 5260..5355 +
1680790053.236355-CDS-C-tenellus_contig7703:5675..57891680790053.236355-CDS-C-tenellus_contig7703:5675..5789Choristocarpus tenellus KU2346CDSC-tenellus_contig7703 5676..5789 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7703.2.1prot_C-tenellus_contig7703.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7703 3188..5789 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7703.2.1

>prot_C-tenellus_contig7703.2.1 ID=prot_C-tenellus_contig7703.2.1|Name=mRNA_C-tenellus_contig7703.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=138bp
DVRSSFENDNLATVTRVDIGTLDCDSLRLAESASELQFTISSTEDVLVLQ
ASFEVLSENIFTDGKSRKVWMGTIVNTTAENITTYPRMFSMTWTDDCDVE
TFLLKIITPTSAGYTSIIKSVPCAAGGDKDICIIEVG*
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mRNA from alignment at C-tenellus_contig7703:3188..5789+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7703.2.1 ID=mRNA_C-tenellus_contig7703.2.1|Name=mRNA_C-tenellus_contig7703.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2602bp|location=Sequence derived from alignment at C-tenellus_contig7703:3188..5789+ (Choristocarpus tenellus KU2346)
GATGTTAGGTCAAGCTTTGAGAATGACAACCTAGCAACAGGTGAAGGGCG
AAGCGGAAAATAAGGGGAGTATATCGGGAATGGGGTTAGCCTATATTAAT
CATGGAATAGCTCAACAGGTGGTGAATAATAGACATTTCCATTGGGAAAA
GATCTTGAGAGCGTTGGATTTCTAACTAATGGCATACTCCGATTATATAA
ACATCGCTATTTACTCTAAAATTGTTGAGCAGTGTATGGTGCTTGCATTT
CTTCGATTGGAGTTACAGTTTCGGATCGGTTGTCAAATCGTCCATTAAAG
ATCGAACCATTCAGTCGAGAGTGCATCAGAGATCACAAACACATTCGACC
AGTTGCTCATGTTTTGCCAAAGAAGATCAGTTGACTCCACATCTATGCCT
CCCCCCCCCAATATAATTGTTACTACAAGTGACACGAGTCGACATTGGGA
CTTTGGACTGTGATTCTCTTCGACTTGCGGAAAGTGCCTCAGAGCTGCAG
TTCACCATCAGCTCCACAGAGGTAAGCAAATGGGTGGAGTATTCTATGTA
TAGTACATTGCGACAGCTCAGAAATCCTGGACCTAATATGCTTGACCTTT
TCTTATTGTAACGGTTCGAACATAGTATGTTTCCTCGTGTGTTTCACCCA
AACAAGTACAACACTGAGTACTCTGGAGTAAGCTTTTGCTTTTTGCGATA
AAAAAACAATTTCGATACACAGTCAGCGTCATACTTCACGACTCACGATA
TAACTGCATGTCGTTGCTTGCTACAATAAGTGAGATGTGTTGCAATGTGG
TCGACGACTATATCTTCAGTATTTTGTGACATCTTTCACTCTCCTCGGAA
AATATATTTTTTTCCATCTGTGTTCCTTTATACCAAGTAGAAAGTTGTCC
CCTGATGATCACGTTTGTGTGCTTCTGTTAGTTGAGCCGTACATTTTGTA
CCTCGAAAAGTTGTCTAAATACAGCTGTATATGCACCCTTTTCCAGACCA
AAGTAATCAATTGAGCAACATGAGCATTTAGAGTAGTATTCGAAACGCTT
GAGGTATATCCTGGCTTTAATATTTAATAACTCTTTACCCCTACGTTCTA
CTGACAAGAGTAAGACACATACAACAGCTTTTCAAGTTGTACAAATGGTC
TACCCCTCACCTAGCTTGCATACACTTCCTAAAAGAAATATCATATGTGT
CAAATCACCGTTACATCTCAGGGTTAGGGTTGTGTCAGATTTTCGTGAAA
ATATCTGCTGTATCATATTTGTATACAGAGACAGATGGAGACTCACGTTT
CTTTTTCCTGCTTCCCTCCCCCTGATATTTTTTTGTTTTACCAGGATGTC
CTTGTTTTACAGGCATCCTTCGAGGTCCTCAGTGAAAATATATTCACAGA
TGGCAAAAGCCGCAAGGTGAGCCAACAAGATTTTGCAAAAACATTAGAAA
TGATATGCCAAAGTGGTATGATAATACGGGAAGATTTTCATGTATTTATT
TGCTCCTGCAGCACATCATTTTGTACTCTAGTATCACTTGTTTTATTCCT
TAATTTAGGGATCTAAACTCCATGTTCTATGGCATGTTCTTAGAACACGA
AGGCATGTTGCTGACATAGTACGAAGCCAGTGGTAATTATTTTAGCTTTT
CGTCCCATGCGATTGTAGCAGGCGTTCTACCTTGGTTAGAATGTTCTCTG
GGGGAAAATGAATGCAGGAACTCTTTTGAGTATTCAAAGCAGAATGAGGC
ATTACATACATGTTGTCAATAGACTAGTGGCAGTGTATCGTATTCCTTGG
CCTTGACACCACCCTTTGATTCCTTGAACTGCCCCCACTTTTCCTTTTAA
CGTTTGAAACAATCAATCAATTCACCCTACCTCTCTCCTGTACTTTGTAC
TGCAACTGCTGGTCTAAGATGGTGTCAATTTACAATTTTCTGACTCGTAG
ACGCTACATTTGGGAAATTTGCAGACACAGCTTAGAGTGAGCACATTTCA
GCTACAGCTTAGAGCGAGCACAATCCTCTTTTTTTCTGACATAATCATGT
CTCCTCAAAATACTGATATCAGGTTTGGATGGGTACTATCGTCAACACGA
CAGCTGAAAACATCACCACTTACCCTCGTATGTTCTCCATGACCTGGACT
GATGACTGTGATGTTGAGGTAAGACTAGTGGAACAGATGCAATGCTATTC
AAGCATGTTGTAATGGTTGCCAGACTAGACTGTGATGGTTTACAATAGTA
TCAATATCTTCCAGGTAATAAAGCTATTTACCTGGTGAGTCCAAAGGGGT
GGTCATCCATTGATATGACCTGACTTTCAGGTCTCACGCCTTGTGATTCC
TAAGGTTGAGTTCAGTCCAAGGCTGATGTTGGTTAGTGCTTGCATTGTAA
AGAACACCCATGCACTCATGCATGCACCCATGTACTCACACGTCTTCACT
GTGTATCCTGTCCTGGTGTCCCTCTGGCTTTTATCCAGACTTTCCTTCTC
AAAATAATCACACCAACCTCAGCCGGCTACACAAGCATTATCAAATCTGT
TCCTTGTGCAGCTGGGGGTGACAAGGACATCTGCATCATTGAGGTGGGCT
GA
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Coding sequence (CDS) from alignment at C-tenellus_contig7703:3188..5789+

>mRNA_C-tenellus_contig7703.2.1 ID=mRNA_C-tenellus_contig7703.2.1|Name=mRNA_C-tenellus_contig7703.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=414bp|location=Sequence derived from alignment at C-tenellus_contig7703:3188..5789+ (Choristocarpus tenellus KU2346)
GATGTTAGGTCAAGCTTTGAGAATGACAACCTAGCAACAGTGACACGAGT
CGACATTGGGACTTTGGACTGTGATTCTCTTCGACTTGCGGAAAGTGCCT
CAGAGCTGCAGTTCACCATCAGCTCCACAGAGGATGTCCTTGTTTTACAG
GCATCCTTCGAGGTCCTCAGTGAAAATATATTCACAGATGGCAAAAGCCG
CAAGGTTTGGATGGGTACTATCGTCAACACGACAGCTGAAAACATCACCA
CTTACCCTCGTATGTTCTCCATGACCTGGACTGATGACTGTGATGTTGAG
ACTTTCCTTCTCAAAATAATCACACCAACCTCAGCCGGCTACACAAGCAT
TATCAAATCTGTTCCTTGTGCAGCTGGGGGTGACAAGGACATCTGCATCA
TTGAGGTGGGCTGA
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