mRNA_C-tenellus_contig77.4.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig77.4.1
Unique NamemRNA_C-tenellus_contig77.4.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig77.4.1 vs. uniprot
Match: D7G865_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G865_ECTSI)

HSP 1 Score: 235 bits (599), Expect = 1.530e-66
Identity = 160/454 (35.24%), Postives = 241/454 (53.08%), Query Frame = 1
Query:    1 LKVVSLDGRGIHSYDKQGGQNLVKPFSATERSIVCSLCFIPRYDVIIVSSMDTTLRVYDRRKLLELVVLPTRKMALLFLAYNNKSDQIISGGSEGCHVWRLVRR-ISSSDRCTSSYSLSLIREFKDCPKWMTKIEFDEEAQILLVLKGGCVVIYDT---TTNLEVHRIIRAHGVPLTAGLWFTDSQYIVTGCSQGFIKVWACHHKDRGTAPKELRKKGKGVK-IAHRKRRRTATMKQPALLKSIRKHSHTVTGLVAHRVNCSLILSSSLDQTLRLWDIHRLIAVAVIQTSGPHGLLLVEMDQGLWGMIDESVLV--GWNKDQDTADAIP------LSYKG----GSSQKYGNQENTSVRVNGRKREKG-GNCCGMGLADRTK-FFLAWAHLKSVADRFCHHTWVPRRSKVVCLADNGSLAVHSV--EKGKESKGQSWQVSLPSPNEKVMCMVLL 1299
            +++VS DGR I S+ + G  + VK  +  E +++ ++ +IP  +V++ +S D+ L V+D R +  L  L T K  LL L YN   D+IISGGS+GC VWRL         +    Y L+L+  FK C  W  ++ FDE +Q+++ + G  V  YD    TTNL +  I RAH  P+T  LW  +S+ IVTGC  G +K+WAC H D     +  R + +  K +   +  R    + PAL+KS   HS  +TGLV H +N S I+SS  D TLR+WD+ RL AV  +      GL+LV+M QGLWG++ ES+L+  G     +T  ++       +S  G    G+ +   + E T  +++    E G G+   +   + T   F +W  L  V +R+ HH    RR +V+CLA +G L  ++   E+G+  K  S  V L +       M LL
Sbjct:    1 MRIVSTDGRSIDSWLELGNGDSVKT-ARVEHNVINAIAYIPPLNVVVAASGDS-LVVFDGRTMRCLATLSTSKKVLLQLQYNLARDEIISGGSDGCFVWRLTAAPFKPYAQEVVPYELTLLHGFKGCSHWAGRMFFDERSQVIITIDGMKVQKYDAGAATTNLYI--IKRAHESPVTVVLWVGESENIVTGCMGGLLKIWACQHTDANGVKRSRRGRWRQHKRLRCARSHRKGCGRSPALVKSFEGHSGGITGLVRHCLNSSYIVSSGADGTLRVWDVDRLAAVTAVSRESDVGLVLVQMKQGLWGLMSESLLLPTGTQPATNTKTSVSSTATTCVSQAGLIPPGTDESQHSFERTEGKIS--NLEFGDGDAIALDEGNTTSSLFHSWPSLSCVVERYSHHVLSRRRRRVICLAGSGVLDTYAYDPERGEARKISSRDVDLHANGATATSMCLL 448          
BLAST of mRNA_C-tenellus_contig77.4.1 vs. uniprot
Match: UPI001425AF50 (uncharacterized protein LOC117114300 isoform X1 n=2 Tax=Anneissia japonica TaxID=1529436 RepID=UPI001425AF50)

HSP 1 Score: 79.0 bits (193), Expect = 7.320e-12
Identity = 68/292 (23.29%), Postives = 132/292 (45.21%), Query Frame = 1
Query:   10 VSLDGRGIHSYDKQGGQNLVKP---FSATERSIVCSLCFIPRYDVIIVSSMDTTLRVYDRRKLLELVVLPTRKMALLFLAYNNKSDQIISGGSEGCHVWRLVR---RISSSDRCTSSYSLSLIREFKDCP-KWMTKIEFDEEAQILLVLKGGCVVIYDTTTNLEVHRIIRAHGVPLTAGLWFTDSQYIVTGCSQGFIKVWACHHKDRGTAPKELRKKGKGVKIAHRKRRRTATMKQPALLKSIRKHSHTVTGLVAHRVNCSLILSSSLDQTLRLW--DIHRLIAVAVIQTSG 858
            + LD RGI +++K    N V     +   +  ++  + +  +++V    + D +L+V +     E   + +   +++FL +N   D++I+GG +G  VW   +   R+ +  +  ++Y+L   RE K     W+ KIE D+  Q L       V+ YD    L V +++ AH   +T   +   ++ +VT  +   +KVW+                   +   H              + + R HS  VT ++ H  + S++L+SS+D ++RLW  +I  ++   V+ T G
Sbjct:  142 IFLDTRGITTWNKDSVHNKVTRGLNYPKYQNKLLVKIIYARKFNVYFCIAKDFSLKVLNMN-FEETCNVDSDLSSVMFLIFNPVRDELITGGVKGTMVWEFRQDTDRVWTEIKPMANYALFFQRELKCVGGSWVKKIELDQHQQYLYCCSDTDVICYDIHGRL-VFKLVDAHQSQITGCKYSPQAKLLVTCSADTNVKVWS-------------------MTGGH--------------VHTFRGHSRAVTNILLHPESPSVVLTSSMDGSVRLWSLEIMEMLYSIVVSTEG 398          
BLAST of mRNA_C-tenellus_contig77.4.1 vs. uniprot
Match: C3YAX3_BRAFL (Uncharacterized protein n=3 Tax=Branchiostoma TaxID=7737 RepID=C3YAX3_BRAFL)

HSP 1 Score: 74.7 bits (182), Expect = 1.580e-10
Identity = 69/275 (25.09%), Postives = 120/275 (43.64%), Query Frame = 1
Query:   16 LDGRGIHSY--DKQGGQNLVKPFSATER--SIVCSLCFIPRYDVIIVSSMDTTLRVYDRRKLLELVVLPTRKMALLFLAYNNKSDQIISGGSEGCHVWRLVRRIS--SSDRCTSSYSLSLIREFKDCP-KWMTKIEFDEEAQILLVLKGGCVVIYDTTTNLEVHRIIRAHGVPLTAGLWFTDSQYIVTGCSQGFIKVWACHHKDRGTAPKELRKKGKGVKIAHRKRRRTATMKQPALLKSIRKHSHTVTGLVAHRVNCSLILSSSLDQTLRLWDI 819
            LD RGI  +  D   G  +V+     +   +++  + F  +Y+V      D +L+VY++       V      ++LF+ +N   D++I+GG  G  VW+  +R+   +  R  S+Y L L  E+ +    W   ++ D   Q L       +  Y T   L +++I+RAH   +T   +   ++ +VT      +KVW+                 KG                  L+   R HS +VT LV H    +L+L+SSLD T+++W +
Sbjct:  141 LDTRGITCWYSDVIVGHPVVRSLHYPKYMFNVIKKIAFSKKYNVYFTLGKDFSLKVYNKNFDETCKVENHDLKSVLFMLWNPGRDELITGGVGGTKVWQFTKRLEMMADIRPMSNYRLVLKHEWPNVGGSWARYVQLDLNMQHLYCCTETDLYCYSTEGQL-LYKILRAHKTFITGCQFSQHAKLLVTSSHDFEVKVWSI----------------KG-----------------GLVHVFRGHSRSVTQLVLHPATSALVLTSSLDGTVKMWSL 381          
BLAST of mRNA_C-tenellus_contig77.4.1 vs. uniprot
Match: UPI001B7DE0D5 (uncharacterized protein LOC121279736 n=1 Tax=Carcharodon carcharias TaxID=13397 RepID=UPI001B7DE0D5)

HSP 1 Score: 73.9 bits (180), Expect = 2.550e-10
Identity = 68/277 (24.55%), Postives = 113/277 (40.79%), Query Frame = 1
Query:    4 KVVSLDGRGIHSY--DKQGGQNLVKPFSATERSIVCSLCFIPRYDVIIVSSMDTTLRVYDRRKLLELVVLPTRKMALLFLAYNNKSDQIISGGSEGCHVW--RLVRRISSSDRCTSSYSLSLIREFKDCP-KWMTKIEFDEEAQILLVLKGGCVVIYDTTTNLEVHRIIRAHGVPLTAGLWFTDSQYIVTGCSQGFIKVWACHHKDRGTAPKELRKKGKGVKIAHRKRRRTATMKQPALLKSIRKHSHTVTGLVAHRVNCSLILSSSLDQTLRLWDI 819
            K++ LD  G  S+  D  GG      F      I+  + +  +++       D +L+VY++       VL      +  +A+N K+D++I+GG  G   W  R+  R SS      SY L L  ++      W+TK+E D+  Q +       +  YDT   L +  I   H    TA ++ + S+ I+T  +   IK W+                 KG+   H+                   H+  VT L+ H    S+ +SSS D ++R W +
Sbjct:   84 KLILLDSLGCVSWSLDPNGGGKRELEFPKHHYGILKQIIYCSKFNTYFALGKDCSLKVYNKDFCETFTVLNLDLKLVKSIAFNPKTDELITGGVGGVKFWKYRMNHRSSSKVVAMPSYELFLRADYPHMGGNWVTKVELDDATQQVFCCSVQALFCYDTEGKLLLE-IPYPHKCSPTACIYSSYSKIILTCSTDCEIKAWS----------------NKGI-FTHK----------------FTGHTRAVTNLLLHPETSSIFISSSKDGSVRFWSL 326          
BLAST of mRNA_C-tenellus_contig77.4.1 vs. uniprot
Match: A0A024U9D9_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U9D9_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 3.320e-10
Identity = 75/299 (25.08%), Postives = 128/299 (42.81%), Query Frame = 1
Query:   10 VSLDGRGIHSYDKQGGQNLVKPFSATERSIVCSLCFIPRYDVIIVSSMDTTLRVYDRRKLLELVVLPTRKMALLFLAYNNKSDQIISGGSEGCHVWRLVRRISSS-DRC----TSSYSLSLIREF-KDCPKWMTKIEFDEEAQILLVLKGGCVVIY---DTTTNLEVHRIIRAHGVPLTAGLWFTDSQYIVTGCSQGFIKVWACHHKDRGTAPKELRKKGKGVKIAHRKRRRTATMKQPALLKSIRKHSHTVTGLVAHRVNCSLILSSSLDQTLRLWDIHRLIAVAVIQTSGPHGLLLV 879
            V+ D   I  ++ +G    V    A    ++ ++ +I   ++ + S++D +LR YD   L+EL  + T +  +L L ++   ++IISGG +GC  W L  R +   D        SY ++ +  F K    W+ +++ D +A  LLVL    + +Y   D T      ++++     +T  L F     IV  C  G I V   + +      KE                                H+ TVT LV   ++  L++SSSLD ++R+WD+  L  V  ++   P   L V
Sbjct:   31 VTTDEHTIKLWNTEGETRSVT-LPARTSYLIQTIQYISSRNMYMSSALDGSLRFYDE-SLVELASIFTHRATILCLVFDEPRNRIISGGIDGCSAWLLRGRDTEGYDDAHVIRNPSYQVAPLELFNKTGTSWVRRMKIDADANRLLVLSDNTLFVYNLSDATLVDTYKKLVKGKCGAITDFLVFKKKS-IVASCMDGSIYVVTIYPRSTVAVFKE--------------------------------HTKTVTSLVLDPLS-GLLMSSSLDSSMRMWDLDLLRNVHQLRLDTPLSSLFV 293          
BLAST of mRNA_C-tenellus_contig77.4.1 vs. uniprot
Match: A0A6P5AS59_BRABE (uncharacterized protein LOC109486518 n=1 Tax=Branchiostoma belcheri TaxID=7741 RepID=A0A6P5AS59_BRABE)

HSP 1 Score: 73.2 bits (178), Expect = 4.980e-10
Identity = 70/275 (25.45%), Postives = 118/275 (42.91%), Query Frame = 1
Query:   16 LDGRGIHSY--DKQGGQNLVKPFSATER--SIVCSLCFIPRYDVIIVSSMDTTLRVYDRRKLLELVVLPTRKMALLFLAYNNKSDQIISGGSEGCHVWRLVRR--ISSSDRCTSSYSLSLIREFKDCP-KWMTKIEFDEEAQILLVLKGGCVVIYDTTTNLEVHRIIRAHGVPLTAGLWFTDSQYIVTGCSQGFIKVWACHHKDRGTAPKELRKKGKGVKIAHRKRRRTATMKQPALLKSIRKHSHTVTGLVAHRVNCSLILSSSLDQTLRLWDI 819
            LD RGI  +  D   G  +V+     +   +++  + F  +Y+V      D +L+VY++       V      ++LF+ +N   D++I+GG  G  VW   +R  I +  R  S+Y L L  E+ +    W   ++ D   Q L       +  Y T   L +++I+RAH   +T   +   ++ +VT      +KVW+                 KG                  L+   R HS  VT LV H    +L+L+SSLD T+++W +
Sbjct:  147 LDTRGITCWYSDVIVGHPVVRSLHYPKYMFNVIKKITFSKKYNVYFTLGKDFSLKVYNKNFDETCSVENHDLKSVLFMLWNPGRDELITGGVGGTKVWEFTKRLEIMADIRPMSNYRLVLKHEWPNVGGSWARYVQLDLNMQHLYCCTETDLYCYSTEGQL-LYKILRAHKTFITGCQFSQHAKLLVTSSHDFEVKVWSI----------------KG-----------------GLVHVFRGHSRGVTQLVLHPATSALVLTSSLDGTVKMWSL 387          
BLAST of mRNA_C-tenellus_contig77.4.1 vs. uniprot
Match: A0A2G8JV05_STIJA (Uncharacterized protein (Fragment) n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8JV05_STIJA)

HSP 1 Score: 71.2 bits (173), Expect = 1.930e-9
Identity = 51/201 (25.37%), Postives = 97/201 (48.26%), Query Frame = 1
Query:   10 VSLDGRGIHSYDKQGGQNLVK---PFSATERSIVCSLCFIPRYDVIIVSSMDTTLRVYDRRKLLELVVLPTRKMALLFLAYNNKSDQIISGGSEGCHVW---RLVRRISSSDRCTSSYSLSLIREFKDCP-KWMTKIEFDEEAQILLVLKGGCVVIYDTTTNLEVHRIIRAHGVPLTAGLWFTDSQYIVTGCSQGFIKVWA 591
            + LD RGI ++ K G  N V     F   + +++ S+ F  +++V    + D +L+V ++    E     +   +++F+ +N   D++I+GG  G  +W   ++  RI +  +  ++Y L L ++       W+ K+E +E+ Q L       V  YD      + +I RAH   +T   +   S+ +VTG     +KVW+
Sbjct:    2 ILLDTRGITTWTKDGISNSVSRSLSFPKYQNNLLRSIIFAKKFNVYFCLAHDFSLKVLNKN-FEETCTADSDLSSVMFMVFNPIRDELITGGVNGTKIWEFKQIADRIWTEIKPMANYGLFLKKQLDSVGGSWVRKLELNEKMQHLYCCSDTDVSCYDMDGKF-LFKISRAHNSQITGCKYSPQSKVLVTGSFDTEVKVWS 200          
BLAST of mRNA_C-tenellus_contig77.4.1 vs. uniprot
Match: A0A8J5IVB9_9STRA (Uncharacterized protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5IVB9_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 2.680e-9
Identity = 69/298 (23.15%), Postives = 124/298 (41.61%), Query Frame = 1
Query:   10 VSLDGRGIHSYDKQ-GGQNLVKPFSATERSIVCSLCFIPRYDVIIVSSMDTTLRVYDRRKLLELVVLPTRKMALLFLAYNNKSDQIISGGSEGCHVWRLVRRISSSDR--CTSSYSLSLIREF------------KDCPK----------WMTKIEFDEEAQILLVLKGGCVVIYDTTTNLEVHR---IIRAHGVPLTAGLWFTDSQYIVTGCSQGFIKVWACHHKDRGTAPKELRKKGKGVKIAHRKRRRTATMKQPALLKSIRKHSHTVTGLVAHRVNCSLILSSSLDQTLRLWDI 819
            VS+D   +  +  Q GGQ  +    A     + ++ +I    + + S++D  LR+YD   L EL  L T +  +L L ++ + +++++GG +GC  W++  R S        + Y  + + +F            K  PK          W+ +++   E   L       + +++T     + R   +  A    LTA +    ++Y+V G S G I V + HH                + I H                  + H+ T+T L  H  +  L++SSSLD ++RLWD+
Sbjct:   33 VSVDDACLRLWRAQTGGQLRIVSLPARTTRFIQAITYIDARQIFVASALDGALRLYDPN-LNELAALFTGRGTVLSLVFDGQHNRLLTGGVDGCTAWQIKPRPSGMPEGALNAHYEFTHLPKFFHGTAITHSSRNKPQPKSPNASLGRAGWVERLQLGPENTRLYAQTRHWIDVFNTVDGAHLERWDDLFSAEHGTLTAFVVQERAKYLVCGTSSGAIVVLS-HHP---------------ITIVH----------------VFKDHTQTITSLTEHAAS-RLVISSSLDGSVRLWDL 296          
BLAST of mRNA_C-tenellus_contig77.4.1 vs. uniprot
Match: A0A5D6XGJ7_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XGJ7_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 9.630e-9
Identity = 76/322 (23.60%), Postives = 125/322 (38.82%), Query Frame = 1
Query:   10 VSLDGRGIHSYDKQGGQNLVKPFSATERSIVCSLCFIPRYDVIIVSSMDTTLRVYDRRKLLELVVLPTRKMALLFLAYNNKSDQIISGGSEGCHVWRLVRRI---SSSDRCTSSYSLSLIREFKDCPK---------------------------------------------WMTKIEFDEEAQILLVLKGGCVVIYDTTTN--LEVHRII--RAHGVPLTAGLWFTDSQYIVTGCSQGFIKVWACHHKDRGTAPKELRKKGKGVKIAHRKRRRTATMKQPALLKSIRKHSHTVTGLVAHRVNCSLILSSSLDQTLRLWDI 819
            VS D   +  +    G+       A   S + ++ ++    + + +++D TL++YD   L EL  + T + A+L L ++ K  +++SGG +GC  W LVR     +S      SY LSL+  F   P                                              W+  ++ + +   L      CV ++       LE +R +  + +G  L A +    +QYIV GC  G++ V + H                 V + H                  + H+  VTGL  H  + +LILSSSLD T+RLWD+
Sbjct:   54 VSSDDTCLRLWSALKGELRRVELPARTSSFIQAIVYVESRQLYVAAALDGTLKIYDA-SLSELASVFTGRGAILSLVFDAKHGRLLSGGVDGCAAW-LVRGKPVGASESSVNPSYELSLLPTFFSAPPASTPTASSPADSNGHDPGATTAASARAGVGSSRKRGAVEPPHQRAWVCNLQLNADKTRLYAQSKQCVDVFSAADGRFLETYRDLFPKEYGAIL-AFVVHEKTQYIVCGCLNGWVFVVSLHP----------------VSVVH----------------VFKDHTLRVTGLAVHS-SSNLILSSSLDGTVRLWDL 339          
BLAST of mRNA_C-tenellus_contig77.4.1 vs. uniprot
Match: W4GXI0_9STRA (Uncharacterized protein n=10 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GXI0_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 1.290e-8
Identity = 72/299 (24.08%), Postives = 130/299 (43.48%), Query Frame = 1
Query:   16 LDGRGIHSYDKQGG-QNLVKPFSATERSIVCSLCFIPRYDVIIVSSMDTTLRVYDRRKLLELVVLPTRKMALLFLAYNNKSDQIISGGSEGCHVWRLVRRISSSDRCTS------SYSLSLIREF-KDCPKWMTKIEFDEEAQILLVLKGGCVVIYDTTTNLEVH---RIIRAHGVPLTAGLWFTDSQYIVTGCSQGFIKVWACHHKDRGTAPKELRKKGKGVKIAHRKRRRTATMKQPALLKSIRKHSHTVTGLVAHRVNCSLILSSSLDQTLRLWDIHRLIAVAVIQTSGPHGLLLV 879
            +D R I  ++ +G  +N+  P  A    ++ ++ +I   ++ + S++D +LR YD   L+EL  + T +  +L L ++   ++I+SGG +GC  W L+R   +     S      SY ++ +  F K    W+ +++ D ++  LLVL    + +Y+      V    ++++     +T  L F     IV  C  G I V   + +      KE                                H+ TVT L    ++  L+ SSSLD ++R+WD+  L  V  ++   P   L V
Sbjct:   51 IDERTIKLWNTEGEIRNVTLP--ARTSYLIQTIEYISSRNMYMASALDGSLRFYDDT-LVELASIFTHRATILCLVFDEPRNRILSGGIDGCSAW-LLRGKDTEGYDDSHVIRNPSYQVAPLDLFNKTGTSWVRRMKIDADSNRLLVLSENTLYVYNLADAAHVDTYKKLVKGKCGAITDFLVFKKKS-IVASCMDGSIYVVTIYPRSTVAVFKE--------------------------------HTKTVTSLALDPIS-GLLFSSSLDNSIRMWDLDLLRNVHQLRLDTPLSSLFV 311          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig77.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G865_ECTSI1.530e-6635.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
UPI001425AF507.320e-1223.29uncharacterized protein LOC117114300 isoform X1 n=... [more]
C3YAX3_BRAFL1.580e-1025.09Uncharacterized protein n=3 Tax=Branchiostoma TaxI... [more]
UPI001B7DE0D52.550e-1024.55uncharacterized protein LOC121279736 n=1 Tax=Carch... [more]
A0A024U9D9_9STRA3.320e-1025.08Uncharacterized protein n=3 Tax=Aphanomyces invada... [more]
A0A6P5AS59_BRABE4.980e-1025.45uncharacterized protein LOC109486518 n=1 Tax=Branc... [more]
A0A2G8JV05_STIJA1.930e-925.37Uncharacterized protein (Fragment) n=1 Tax=Stichop... [more]
A0A8J5IVB9_9STRA2.680e-923.15Uncharacterized protein n=1 Tax=Phytophthora aleat... [more]
A0A5D6XGJ7_9STRA9.630e-923.60Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
W4GXI0_9STRA1.290e-824.08Uncharacterized protein n=10 Tax=Aphanomyces astac... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig77contigC-tenellus_contig77:16245..18662 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog10228.TriadP52395
PFAMsWD40
Model size1299
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons4
Evalue1.47e-12
EggNOG OGs2DAC8@1|root,2S5FG@2759|Eukaryota,39XDD@33154|Opisthokonta,3B9EY@33208|Metazoa
Ec32 ortholog descriptionWD40 repeat
Ec32 orthologEc-12_001330.1
Cds size1299
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790052.796126-CDS-C-tenellus_contig77:16244..163971680790052.796126-CDS-C-tenellus_contig77:16244..16397Choristocarpus tenellus KU2346CDSC-tenellus_contig77 16245..16397 +
1680790052.80788-CDS-C-tenellus_contig77:16732..169011680790052.80788-CDS-C-tenellus_contig77:16732..16901Choristocarpus tenellus KU2346CDSC-tenellus_contig77 16733..16901 +
1680790052.8215027-CDS-C-tenellus_contig77:17198..177371680790052.8215027-CDS-C-tenellus_contig77:17198..17737Choristocarpus tenellus KU2346CDSC-tenellus_contig77 17199..17737 +
1680790052.8356469-CDS-C-tenellus_contig77:18224..186621680790052.8356469-CDS-C-tenellus_contig77:18224..18662Choristocarpus tenellus KU2346CDSC-tenellus_contig77 18225..18662 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig77.4.1prot_C-tenellus_contig77.4.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig77 16245..18662 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig77.4.1

>prot_C-tenellus_contig77.4.1 ID=prot_C-tenellus_contig77.4.1|Name=mRNA_C-tenellus_contig77.4.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=433bp
LKVVSLDGRGIHSYDKQGGQNLVKPFSATERSIVCSLCFIPRYDVIIVSS
MDTTLRVYDRRKLLELVVLPTRKMALLFLAYNNKSDQIISGGSEGCHVWR
LVRRISSSDRCTSSYSLSLIREFKDCPKWMTKIEFDEEAQILLVLKGGCV
VIYDTTTNLEVHRIIRAHGVPLTAGLWFTDSQYIVTGCSQGFIKVWACHH
KDRGTAPKELRKKGKGVKIAHRKRRRTATMKQPALLKSIRKHSHTVTGLV
AHRVNCSLILSSSLDQTLRLWDIHRLIAVAVIQTSGPHGLLLVEMDQGLW
GMIDESVLVGWNKDQDTADAIPLSYKGGSSQKYGNQENTSVRVNGRKREK
GGNCCGMGLADRTKFFLAWAHLKSVADRFCHHTWVPRRSKVVCLADNGSL
AVHSVEKGKESKGQSWQVSLPSPNEKVMCMVLL
back to top

mRNA from alignment at C-tenellus_contig77:16245..18662+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig77.4.1 ID=mRNA_C-tenellus_contig77.4.1|Name=mRNA_C-tenellus_contig77.4.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2418bp|location=Sequence derived from alignment at C-tenellus_contig77:16245..18662+ (Choristocarpus tenellus KU2346)
TTGAAAGTCGTATCGTTGGATGGACGAGGTATACACAGCTACGACAAACA AGGTGGTCAGAACTTGGTTAAACCATTTTCCGCCACAGAGCGGAGTATCG TCTGCAGCCTGTGCTTCATTCCTAGATACGATGTGATTATCGTCTCGTCG ATGGTGAGTTGAGGGGAGGAGTAGGACCAACACAACTTTGTCAAGCTTTG AAACTCCAGACAGTCCATTAGAGCCCTGTGCTAGCCACACTCTGTAATTC GATCCATACCTTCACCAGATGCTTCTCGGGTTTCAGATGGAAACTCTTCT TACTGGATTTGTGTCCATACTTGAAAGGTGCGATTTTCTGTTCTTCCATG TATGTCAGGTTACTGCAAATGCCTGCCTCGCCTCTTGGGACCACTAACAC ACGATATACGAGATGCATTTAAGCTCGACCCCCACATTCGTCGCCAACAC TATCTCACAAAAAAATGGTGTATCTCCTGCAAGTGTAGGATACAACTCTT CGAGTGTATGATCGACGAAAACTGTTGGAGCTGGTGGTGCTCCCAACGAG AAAAATGGCGCTGCTTTTTCTCGCCTACAACAATAAATCTGATCAGATCA TATCTGGGGGGTCTGAGGGTTGCCATGTGTGGCGTCTTGTTCGCCGCATT AGCTCGAGTAACTCGTATCCTAGCATGTCAGGTAAGGCAGAAAGGTGTTA CCCCTGAGCTCAAGCGAGGATGCTCAATGAAGAATATCAATCACCACATA TATTTCGATCTCCAGAACAGAACCTGCAACGATCTAACACTCCACTTCAT GGTGGGAACTTGATTAGCTATTCGGTTTTCATACTTGTGCTGACTACCAA GTTTGCCGCCACTGGTTGAAATAGTTACTGCAAGCAGTCCGGAAAAAAAT ATTACCCCTCAAGCTGAGTCAAAGCTGTGTCATTTGTTCTTATCCTTGTT GCAGGTGACAGGTGTACGTCATCATATTCTCTGTCTCTGATAAGGGAGTT CAAGGATTGCCCAAAGTGGATGACCAAGATCGAATTTGATGAGGAAGCCC AAATCCTCCTTGTCCTTAAGGGAGGTTGTGTGGTGATATACGACACAACA ACAAATCTGGAGGTGCATCGTATTATCAGAGCCCATGGTGTACCGCTGAC AGCTGGCTTGTGGTTTACGGACAGTCAATACATAGTTACAGGGTGCTCGC AGGGTTTCATCAAGGTCTGGGCATGCCACCACAAGGATCGTGGCACTGCA CCAAAGGAGCTTCGAAAAAAGGGAAAGGGAGTAAAGATTGCTCACAGGAA GAGAAGAAGAACTGCCACTATGAAGCAACCAGCACTTCTAAAATCAATCC GCAAACATTCGCACACAGTGACGGGACTTGTGGCCCATAGGGTGAACTGC TCTCTTATTCTTAGCTCCAGCTTGGATCAAACCCTGCGGTTGTGGGACAT TCATCGCCTCATTGCAGTGGCAGTGATCCAAACAAGTGGCCCAGTGGCTT GCCTTCAATCATACAGCAGTGAAGATGGAGGTACTCAGATGATATATGCG GAGGAGAAGGGGTACATAAGCGTTCTGAGAGTGTGCAAAGTGTGCACTTT TGTTTTTGGGACTGTGCAAGAGGTCAGGCGAATACAGTACTTTCCTCAAG GATTCGAGGATGGGATGGTCTCAGGTGATGGTAGGTATGTTGTGCACAGG TTAGGGTAGTGCATAGCTCATACATTCAATAAGGGCCTCAGTTGATGGCG ATTTTTCTGAATTTGAGGGTGGATGTTGATTTCAATGAGGCCTGCAAGAG CTTCTCAGTTCCATTTTTACCCCAGTGTCAAGACTTATGATGGTATATGG AGCGTGCTCTTTAAGTACACTTGTTTGTCTTTCCTAAAAAAAATGTGGTA TGGTCTTTATTCAACAGTGCATAATCTAACCGGTCCTGGATCTCTATCTT GCTCTAGGGAGTAGCTGCAATGTTGGGAAGCATGGCCTCCTCCTTGTGGA AATGGATCAAGGTCTATGGGGCATGATTGATGAGTCTGTGCTGGTAGGTT GGAACAAGGATCAGGATACGGCAGATGCAATCCCCTTGTCATATAAAGGT GGCTCCAGTCAAAAATATGGAAATCAAGAGAATACCAGTGTGAGGGTCAA TGGGAGAAAAAGGGAAAAAGGTGGCAACTGTTGTGGCATGGGATTAGCAG ATAGAACCAAATTCTTTTTAGCCTGGGCTCATTTGAAGTCTGTGGCAGAC CGTTTTTGCCATCATACATGGGTACCACGTCGGTCCAAGGTGGTGTGTCT TGCTGACAATGGCTCCTTGGCAGTGCATAGTGTTGAGAAGGGAAAGGAAA GCAAAGGGCAATCTTGGCAGGTGTCACTACCCTCGCCAAACGAGAAGGTG ATGTGCATGGTGCTGCTG
back to top

Coding sequence (CDS) from alignment at C-tenellus_contig77:16245..18662+

>mRNA_C-tenellus_contig77.4.1 ID=mRNA_C-tenellus_contig77.4.1|Name=mRNA_C-tenellus_contig77.4.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=1299bp|location=Sequence derived from alignment at C-tenellus_contig77:16245..18662+ (Choristocarpus tenellus KU2346)
TTGAAAGTCGTATCGTTGGATGGACGAGGTATACACAGCTACGACAAACA
AGGTGGTCAGAACTTGGTTAAACCATTTTCCGCCACAGAGCGGAGTATCG
TCTGCAGCCTGTGCTTCATTCCTAGATACGATGTGATTATCGTCTCGTCG
ATGGATACAACTCTTCGAGTGTATGATCGACGAAAACTGTTGGAGCTGGT
GGTGCTCCCAACGAGAAAAATGGCGCTGCTTTTTCTCGCCTACAACAATA
AATCTGATCAGATCATATCTGGGGGGTCTGAGGGTTGCCATGTGTGGCGT
CTTGTTCGCCGCATTAGCTCGAGTGACAGGTGTACGTCATCATATTCTCT
GTCTCTGATAAGGGAGTTCAAGGATTGCCCAAAGTGGATGACCAAGATCG
AATTTGATGAGGAAGCCCAAATCCTCCTTGTCCTTAAGGGAGGTTGTGTG
GTGATATACGACACAACAACAAATCTGGAGGTGCATCGTATTATCAGAGC
CCATGGTGTACCGCTGACAGCTGGCTTGTGGTTTACGGACAGTCAATACA
TAGTTACAGGGTGCTCGCAGGGTTTCATCAAGGTCTGGGCATGCCACCAC
AAGGATCGTGGCACTGCACCAAAGGAGCTTCGAAAAAAGGGAAAGGGAGT
AAAGATTGCTCACAGGAAGAGAAGAAGAACTGCCACTATGAAGCAACCAG
CACTTCTAAAATCAATCCGCAAACATTCGCACACAGTGACGGGACTTGTG
GCCCATAGGGTGAACTGCTCTCTTATTCTTAGCTCCAGCTTGGATCAAAC
CCTGCGGTTGTGGGACATTCATCGCCTCATTGCAGTGGCAGTGATCCAAA
CAAGTGGCCCACATGGCCTCCTCCTTGTGGAAATGGATCAAGGTCTATGG
GGCATGATTGATGAGTCTGTGCTGGTAGGTTGGAACAAGGATCAGGATAC
GGCAGATGCAATCCCCTTGTCATATAAAGGTGGCTCCAGTCAAAAATATG
GAAATCAAGAGAATACCAGTGTGAGGGTCAATGGGAGAAAAAGGGAAAAA
GGTGGCAACTGTTGTGGCATGGGATTAGCAGATAGAACCAAATTCTTTTT
AGCCTGGGCTCATTTGAAGTCTGTGGCAGACCGTTTTTGCCATCATACAT
GGGTACCACGTCGGTCCAAGGTGGTGTGTCTTGCTGACAATGGCTCCTTG
GCAGTGCATAGTGTTGAGAAGGGAAAGGAAAGCAAAGGGCAATCTTGGCA
GGTGTCACTACCCTCGCCAAACGAGAAGGTGATGTGCATGGTGCTGCTG
back to top