mRNA_C-tenellus_contig7669.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7669.1.1
Unique NamemRNA_C-tenellus_contig7669.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig7669.1.1 vs. uniprot
Match: D8LJV3_ECTSI (Protein kinase domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJV3_ECTSI)

HSP 1 Score: 94.0 bits (232), Expect = 6.700e-24
Identity = 43/52 (82.69%), Postives = 46/52 (88.46%), Query Frame = 1 
Query:    1 VLDLSMALSNALEYLHDTAVSGRIVCHRDLKPDNIGFTKDGVLKIIDFGLGK 156
            VLDLS+AL NALEYLHD AV GRIVCHRDLKPDN GF +DG LK+IDFGLGK
Sbjct:    6 VLDLSLALCNALEYLHDVAVPGRIVCHRDLKPDNTGFAQDGTLKLIDFGLGK 57
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BLAST of mRNA_C-tenellus_contig7669.1.1 vs. uniprot
Match: D8LJM0_ECTSI (Serine/threonine-protein kinase CTR1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJM0_ECTSI)

HSP 1 Score: 97.1 bits (240), Expect = 3.980e-22
Identity = 44/53 (83.02%), Postives = 48/53 (90.57%), Query Frame = 1 
Query:    1 VLDLSMALSNALEYLHDTAVSGRIVCHRDLKPDNIGFTKDGVLKIIDFGLGKV 159
            VLDLS+AL NALEYLHD AV GRIVCHRDLKPDNIGF +DG LK+IDFGLGK+
Sbjct:  445 VLDLSLALCNALEYLHDVAVPGRIVCHRDLKPDNIGFAQDGTLKLIDFGLGKI 497
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BLAST of mRNA_C-tenellus_contig7669.1.1 vs. uniprot
Match: A0A6H5JJI7_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJI7_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 3.990e-22
Identity = 44/53 (83.02%), Postives = 48/53 (90.57%), Query Frame = 1 
Query:    1 VLDLSMALSNALEYLHDTAVSGRIVCHRDLKPDNIGFTKDGVLKIIDFGLGKV 159
            VLDLS+AL NALEYLHD AV GRIVCHRDLKPDNIGF +DG LK+IDFGLGK+
Sbjct:  492 VLDLSLALCNALEYLHDVAVPGRIVCHRDLKPDNIGFAQDGTLKLIDFGLGKI 544
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BLAST of mRNA_C-tenellus_contig7669.1.1 vs. uniprot
Match: A0A7S3DWF4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S3DWF4_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 2.450e-16
Identity = 31/56 (55.36%), Postives = 45/56 (80.36%), Query Frame = 1 
Query:    1 VLDLSMALSNALEYLHDTAVSGRIVCHRDLKPDNIGFTKDGVLKIIDFGLGKVWED 168
            VL ++ +++ A+ YLH++A+ G IV HRDLKPDNIGFT DG +K++DFGL K+ E+
Sbjct:   21 VLRIARSIAEAMTYLHESAIMGSIVLHRDLKPDNIGFTLDGTIKVLDFGLAKIIEN 76
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BLAST of mRNA_C-tenellus_contig7669.1.1 vs. uniprot
Match: D8LPX2_ECTSI (N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPX2_ECTSI)

HSP 1 Score: 71.2 bits (173), Expect = 3.610e-15
Identity = 33/37 (89.19%), Postives = 34/37 (91.89%), Query Frame = 1 
Query:    1 VLDLSMALSNALEYLHDTAVSGRIVCHRDLKPDNIGF 111
            VLDLS+AL NALEYLHD AV GRIVCHRDLKPDNIGF
Sbjct:   27 VLDLSLALCNALEYLHDVAVPGRIVCHRDLKPDNIGF 63
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BLAST of mRNA_C-tenellus_contig7669.1.1 vs. uniprot
Match: A0A7S3DX07_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S3DX07_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 1.510e-14
Identity = 31/56 (55.36%), Postives = 45/56 (80.36%), Query Frame = 1 
Query:    1 VLDLSMALSNALEYLHDTAVSGRIVCHRDLKPDNIGFTKDGVLKIIDFGLGKVWED 168
            VL ++ +++ A+ YLH++A+ G IV HRDLKPDNIGFT DG +K++DFGL K+ E+
Sbjct:  527 VLRIARSIAEAMTYLHESAIMGSIVLHRDLKPDNIGFTLDGTIKVLDFGLAKIIEN 582
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BLAST of mRNA_C-tenellus_contig7669.1.1 vs. uniprot
Match: A0A7S2S189_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2S189_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 9.850e-14
Identity = 32/56 (57.14%), Postives = 43/56 (76.79%), Query Frame = 1 
Query:    1 VLDLSMALSNALEYLHDTAVSGRIVCHRDLKPDNIGFTKDGVLKIIDFGLGKVWED 168
            VL  + +++ A+EYLH  A+ G +V HRDLKPDNIGFT DG +K+IDFGL +V E+
Sbjct:  491 VLKCARSIAEAMEYLHSDAIPGCMVLHRDLKPDNIGFTLDGTIKLIDFGLARVVEN 546
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BLAST of mRNA_C-tenellus_contig7669.1.1 vs. uniprot
Match: B5Y4X7_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B5Y4X7_PHATC)

HSP 1 Score: 71.2 bits (173), Expect = 4.690e-13
Identity = 31/56 (55.36%), Postives = 43/56 (76.79%), Query Frame = 1 
Query:    1 VLDLSMALSNALEYLHDTAVSGRIVCHRDLKPDNIGFTKDGVLKIIDFGLGKVWED 168
            VL ++ ++++A+ Y H  A+ G +V HRDLKPDNIGFT DG +KIIDFGL K+ E+
Sbjct:  489 VLRVARSIADAMSYCHQEAIPGCMVLHRDLKPDNIGFTLDGTVKIIDFGLAKIVEN 544
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BLAST of mRNA_C-tenellus_contig7669.1.1 vs. uniprot
Match: A0A7S2LC32_9STRA (Hypothetical protein n=2 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LC32_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 5.200e-13
Identity = 33/56 (58.93%), Postives = 43/56 (76.79%), Query Frame = 1 
Query:    1 VLDLSMALSNALEYLHDTAVSGRIVCHRDLKPDNIGFTKDGVLKIIDFGLGKVWED 168
            VL+ + +L++AL Y H  AV G +V HRD+KPDNIGFT DG LK+IDFGL KV ++
Sbjct:  163 VLNHARSLADALGYCHGKAVPGTLVLHRDVKPDNIGFTIDGTLKLIDFGLAKVVDN 218
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BLAST of mRNA_C-tenellus_contig7669.1.1 vs. uniprot
Match: A0A7S1D4R0_CYCTE (Hypothetical protein (Fragment) n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D4R0_CYCTE)

HSP 1 Score: 67.0 bits (162), Expect = 5.440e-13
Identity = 29/53 (54.72%), Postives = 40/53 (75.47%), Query Frame = 1 
Query:    1 VLDLSMALSNALEYLHDTAVSGRIVCHRDLKPDNIGFTKDGVLKIIDFGLGKV 159
            VL  + ++++A+ Y  + AV+G +V HRDLKPDNIGFT  G LK++DFGL KV
Sbjct:   31 VLKFASSIASAMAYCQEKAVNGSMVLHRDLKPDNIGFTLSGTLKVLDFGLAKV 83
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7669.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJV3_ECTSI6.700e-2482.69Protein kinase domain-containing protein n=2 Tax=E... [more]
D8LJM0_ECTSI3.980e-2283.02Serine/threonine-protein kinase CTR1 n=1 Tax=Ectoc... [more]
A0A6H5JJI7_9PHAE3.990e-2283.02Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A7S3DWF4_9STRA2.450e-1655.36Hypothetical protein (Fragment) n=1 Tax=Amphiprora... [more]
D8LPX2_ECTSI3.610e-1589.19N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepI... [more]
A0A7S3DX07_9STRA1.510e-1455.36Hypothetical protein (Fragment) n=1 Tax=Amphiprora... [more]
A0A7S2S189_9STRA9.850e-1457.14Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
B5Y4X7_PHATC4.690e-1355.36Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
A0A7S2LC32_9STRA5.200e-1358.93Hypothetical protein n=2 Tax=Leptocylindrus danicu... [more]
A0A7S1D4R0_CYCTE5.440e-1354.72Hypothetical protein (Fragment) n=1 Tax=Cyclophora... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7669contigC-tenellus_contig7669:3589..3759 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2850.Phatr43968
PFAMsPkinase_Tyr
Model size171
Max annot lvl2836|Bacillariophyta
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue5.51e-13
EggNOG OGsCOG0515@1|root,KOG0192@2759|Eukaryota,2XD1E@2836|Bacillariophyta
DescriptionProtein tyrosine kinase
Cds size156
COG categoryT
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790050.8109941-UTR-C-tenellus_contig7669:3588..36031680790050.8109941-UTR-C-tenellus_contig7669:3588..3603Choristocarpus tenellus KU2346UTRC-tenellus_contig7669 3589..3603 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790050.827378-CDS-C-tenellus_contig7669:3603..37591680790050.827378-CDS-C-tenellus_contig7669:3603..3759Choristocarpus tenellus KU2346CDSC-tenellus_contig7669 3604..3759 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7669.1.1prot_C-tenellus_contig7669.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7669 3604..3759 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7669.1.1

>prot_C-tenellus_contig7669.1.1 ID=prot_C-tenellus_contig7669.1.1|Name=mRNA_C-tenellus_contig7669.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=52bp
MALSNALEYLHDTAVSGRIVCHRDLKPDNIGFTKDGVLKIIDFGLGKVWE
D*
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mRNA from alignment at C-tenellus_contig7669:3589..3759+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7669.1.1 ID=mRNA_C-tenellus_contig7669.1.1|Name=mRNA_C-tenellus_contig7669.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=171bp|location=Sequence derived from alignment at C-tenellus_contig7669:3589..3759+ (Choristocarpus tenellus KU2346)
GTGCTGGATTTGTCCATGGCCTTATCAAATGCTCTGGAGTACCTTCATGA
TACAGCTGTTTCTGGTCGTATAGTCTGCCACCGTGACCTGAAGCCAGACA
ACATTGGCTTCACCAAGGATGGAGTCCTTAAGATCATCGACTTCGGCTTG
GGGAAGGTGTGGGAGGATTAG
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Coding sequence (CDS) from alignment at C-tenellus_contig7669:3589..3759+

>mRNA_C-tenellus_contig7669.1.1 ID=mRNA_C-tenellus_contig7669.1.1|Name=mRNA_C-tenellus_contig7669.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=156bp|location=Sequence derived from alignment at C-tenellus_contig7669:3589..3759+ (Choristocarpus tenellus KU2346)
ATGGCCTTATCAAATGCTCTGGAGTACCTTCATGATACAGCTGTTTCTGG
TCGTATAGTCTGCCACCGTGACCTGAAGCCAGACAACATTGGCTTCACCA
AGGATGGAGTCCTTAAGATCATCGACTTCGGCTTGGGGAAGGTGTGGGAG
GATTAG
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