mRNA_C-tenellus_contig7651.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7651.2.1
Unique NamemRNA_C-tenellus_contig7651.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7651.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7651contigC-tenellus_contig7651:2440..4185 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size601
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-13_004550.1
Cds size264
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790049.8258731-CDS-C-tenellus_contig7651:2439..25201680790049.8258731-CDS-C-tenellus_contig7651:2439..2520Choristocarpus tenellus KU2346CDSC-tenellus_contig7651 2440..2520 -
1680790049.844576-CDS-C-tenellus_contig7651:2866..29471680790049.844576-CDS-C-tenellus_contig7651:2866..2947Choristocarpus tenellus KU2346CDSC-tenellus_contig7651 2867..2947 -
1680790049.8612235-CDS-C-tenellus_contig7651:3746..38481680790049.8612235-CDS-C-tenellus_contig7651:3746..3848Choristocarpus tenellus KU2346CDSC-tenellus_contig7651 3747..3848 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790049.8719552-UTR-C-tenellus_contig7651:3848..41851680790049.8719552-UTR-C-tenellus_contig7651:3848..4185Choristocarpus tenellus KU2346UTRC-tenellus_contig7651 3849..4185 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7651.2.1prot_C-tenellus_contig7651.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7651 2440..3848 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7651.2.1

>prot_C-tenellus_contig7651.2.1 ID=prot_C-tenellus_contig7651.2.1|Name=mRNA_C-tenellus_contig7651.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=88bp
MEDQARLSFAEGKFREAVQREQAKLMAAGAGLTEAMEILLARVRGTGVPN
FIEADVVCLVQVYGYTREDASRALTIREEIRRLRGLGV
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mRNA from alignment at C-tenellus_contig7651:2440..4185-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7651.2.1 ID=mRNA_C-tenellus_contig7651.2.1|Name=mRNA_C-tenellus_contig7651.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1746bp|location=Sequence derived from alignment at C-tenellus_contig7651:2440..4185- (Choristocarpus tenellus KU2346)
ACTTTCAGGAACAGGGCATAACAAACGTATGCTTTGAAAGATAATTACTA
TTCATATTTACACCTGTGGAGTTTTTAGAACGCTCGAGAGAGGATAAGTA
ACGGTCTCATCCTTGTCTGAGGGAGGTGGAAGTTGGCCCTATCCTCCCTG
ATCATTTAGGAGACGTTCATCCCTCGAAAGACACTAGCATCGCTCCAGCG
AGCAACGTGAGGTCTCACGAGATTTAGGTAGGAGAGAGATTTTACCTGTA
TTAATCTGCAGGGAGAAACTAAGGTGTATTACAGGTCGAGACTTTGGGGG
GGTCTGAGGTAGAGTGTCAAGAGGACGGGAAGGAAAGATGGAGGACCAGG
CGAGGCTTAGCTTCGCTGAGGGGAAATTTCGCGAAGCCGTACAGAGAGAG
CAAGCCAAACTCATGGCTGCTGGAGCTGGTCTCACGGAGGTGAGTGCATA
GCAGCTGTGCAAGCCTAGTCATGTGTCTTGGTGCCACATCATTGTGATCA
AGTGGCAACAGCCATCGGTGTAATGTGTGTTTGACACTGGCTGGACGGTT
CTTGGCGCTAATATAATACGTAGATGTGACTTTTCCTTTTACAGCACTTC
CCTGTCTTGGATATGTTCTCTTTGAAAGAACTATAGTTTTCTTTCTGCTA
CATCTTGCCGCCACCATGAGTGGAACAATCTTGGAGTCGGAATTTCGAGC
TGTGACTCCAAGAAATGGGTAAAATGTAGAGTTTCTCCCTAGTTTCAAAC
TGATAGTTTGCATGTACCTCCCGATGGAAGAATGACATTGCAAATATCGA
CGCCAATGGTAGCGGGTCTTGAATATGCCTGATATCTGCAATACTTGTTG
TCGCGTGCAATTAACGACACTACGCAGTAGACTCCCGCCTCGCTCAACCC
TATCTTCCTATGGTGTAGCCTCTCCTGGCGTGTGCACCAGGAGTGGAATC
TTTTTGGTGCTCCAATAGGATTGAATTGACCCTGTATTGGTTCCGGAAGG
CCTGATGAATGAGACGTAGTTTTCCCAACCTAAACCTTTTCATTGACTTC
AGACTTACTCCTTTGTTGGGCAATGACCTTTGGTCGATGTAGTGATGCTT
GGCAATTAATAAGAAACTCAATACATTGACTCTTCAACCTACTACTACGC
CACCCTCCCATTATGAGCATCAGGTATCCTCTCTCCTCTGACTTCGTTTT
TCTCCTGCACACCCTTTTCCCCACTACTGTTTGGATAGGCTATGGAGATC
CTTCTTGCTAGGGTCAGGGGAACTGGGGTTCCCAATTTTATAGAGGCTGA
TGTAGTCTGTCTTGTTCAGGTTAGTCTGTTGCTTGTTTTTGTTGCAAGAG
GGGAAAAAGAAACCAAGGGCATTTCAAATATGCTAGATAAGTGGATATAC
AGAGACAATAGTTGATGTCCATTGGTGGCATGGGTGTGCTGTGGTGAATC
AACATGTACTATTTTAGTTGAATTTGTGGTTGTGGGCAAGAATTATTTTT
CCAGTTGAGGTTGGTTTGGGTGTGTGAGCAGTCAGTGTATCGTTGCGTGT
GTGAGCAGTTAGTGCATGAGTGCAAAGTACTTCGTATGCAAGGTCGGATA
AATGATTCGACCTGGTCCATGTTTCCAAAACTTGGACTCTGACCTTACGG
ACGCTTGCTTGCCAGGTTTATGGGTATACTAGGGAGGATGCTTCCCGAGC
CCTCACTATTCGGGAGGAGATTAGAAGATTACGGGGTTTAGGGGTG
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Coding sequence (CDS) from alignment at C-tenellus_contig7651:2440..4185-

>mRNA_C-tenellus_contig7651.2.1 ID=mRNA_C-tenellus_contig7651.2.1|Name=mRNA_C-tenellus_contig7651.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=264bp|location=Sequence derived from alignment at C-tenellus_contig7651:2440..4185- (Choristocarpus tenellus KU2346)
ATGGAGGACCAGGCGAGGCTTAGCTTCGCTGAGGGGAAATTTCGCGAAGC
CGTACAGAGAGAGCAAGCCAAACTCATGGCTGCTGGAGCTGGTCTCACGG
AGGCTATGGAGATCCTTCTTGCTAGGGTCAGGGGAACTGGGGTTCCCAAT
TTTATAGAGGCTGATGTAGTCTGTCTTGTTCAGGTTTATGGGTATACTAG
GGAGGATGCTTCCCGAGCCCTCACTATTCGGGAGGAGATTAGAAGATTAC
GGGGTTTAGGGGTG
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