mRNA_C-tenellus_contig7642.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7642.2.1
Unique NamemRNA_C-tenellus_contig7642.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7642.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7642contigC-tenellus_contig7642:1324..5345 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FH58
Preferred nameNGDN
PFAMsSas10,Sas10_Utp3
Model size2341
Max annot lvl2759|Eukaryota
KEGG koko:K08873,ko:K14765,ko:K14767
KEGG Pathwayko03015,map03015
Hectar predicted targeting categoryother localisation
GOsGO:0000447,GO:0000460,GO:0000462,GO:0000466,GO:0000469,GO:0000478,GO:0000479,GO:0000480,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005732,GO:0005737,GO:0005739,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0030490,GO:0030532,GO:0030684,GO:0031974,GO:0031981,GO:0032040,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0120114,GO:1901360,GO:1901363,GO:1990904
Exons3
Evalue5.23e-06
EggNOG OGsKOG3117@1|root,KOG3117@2759|Eukaryota
EC2.7.11.1
Descriptionmaturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
Cds size285
COG categoryS
BRITEko00000,ko00001,ko01000,ko01001,ko03009,ko03019
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790049.3747594-UTR-C-tenellus_contig7642:1323..16121680790049.3747594-UTR-C-tenellus_contig7642:1323..1612Choristocarpus tenellus KU2346UTRC-tenellus_contig7642 1324..1612 +
1680790049.3864653-UTR-C-tenellus_contig7642:1724..17271680790049.3864653-UTR-C-tenellus_contig7642:1724..1727Choristocarpus tenellus KU2346UTRC-tenellus_contig7642 1725..1727 +
1680790049.418003-UTR-C-tenellus_contig7642:3581..53451680790049.418003-UTR-C-tenellus_contig7642:3581..5345Choristocarpus tenellus KU2346UTRC-tenellus_contig7642 3582..5345 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790049.3971539-CDS-C-tenellus_contig7642:1727..18421680790049.3971539-CDS-C-tenellus_contig7642:1727..1842Choristocarpus tenellus KU2346CDSC-tenellus_contig7642 1728..1842 +
1680790049.4082463-CDS-C-tenellus_contig7642:3411..35811680790049.4082463-CDS-C-tenellus_contig7642:3411..3581Choristocarpus tenellus KU2346CDSC-tenellus_contig7642 3412..3581 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7642.2.1prot_C-tenellus_contig7642.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7642 1728..3581 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7642.2.1

>prot_C-tenellus_contig7642.2.1 ID=prot_C-tenellus_contig7642.2.1|Name=mRNA_C-tenellus_contig7642.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=95bp
MTRKGKKERRNLEKEADRLETIADVGNAVDFVRVAREAGEIPTGKYISQD
RGNLGGRRKKRGSGGAGGALELAMGAVGQSMSISSSGKKKSRLK*
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mRNA from alignment at C-tenellus_contig7642:1324..5345+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7642.2.1 ID=mRNA_C-tenellus_contig7642.2.1|Name=mRNA_C-tenellus_contig7642.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=4022bp|location=Sequence derived from alignment at C-tenellus_contig7642:1324..5345+ (Choristocarpus tenellus KU2346)
AATATATATTTTTTTTTGAAGTTTTTCATTTTTTTTTTAGTGAGCACAGG
ATGAGAGAGGTTCACCGAGAATTGCCGATTTGTATGATGAACCTATCATG
ATGACAAGAAGTGCTGTTGAGATAAAAGCAGTCGTCGTGAAGGGATGAGG
GATTGAGGTTTTTGTGGTAGAATGATGGAGTAATACCATATACTACCATG
ATGAGGATTTTTTCTGCCATTCCACCATTATGGTGACTAAATTGGCATGC
TTCTTACAGGTTAGAAATCATGAGCATCTGGGGGGATAGGTTTGTTCAAG
GCAGGTGACAATTGCCACGCCATGCCCTGATATTTCTCCTTTGTTTTCAT
TTCTATGCCGATGTCCTCTTCCATCAACCTTAATTTTTTTTTAACGTTCA
GACCATGACCAGAAAGGGCAAGAAGGAACGGAGGAATTTGGAGAAGGAGG
CAGATCGATTGGAGACCATAGCCGATGTTGGCAATGCAGTAGACTTTGTT
AGGGTTGCTCGAGAGGCAGGTGTGTAAAGGTCAGGGGGGGGGGGGGGGGG
AAACAGTGGGGGGGATTAGAAGCAATGGAGGTTTTTTGTCTCTTCTGTTG
TAGGANNNNNNNNNNGGGGGGGGGGGGGGTTTAAACTGTGGGAGGTATTA
GAAGGAATTCATGTTTTGTCTCTCTGCTGTTGTAGCACCCCTCCTGCCAG
TGAAACTCACAATATTCTCGGCTGTGCTGTACTCTGAAGCTTACGTGTGT
CCTGTGGCCTTGACTTGGTGTATGTTGTTGATGAAGTGATTGTAAAATTA
TGTTTTCTGTTGCGCTCTTCTGAATTTGATCTGATCTGATCTGATCTGAA
TTGGGCACGGGATGAAAGGAGCTAGGCTATGTATCTATGTATGTATACTT
GAAGACATTGTGAAGACAAGACCACTTACAAGACGATGTTTCTATTGACC
CTGCCTCTGGTTGACTTATTGGTTATTGACTTTGATTTGACCTTTGTAGG
CCGCTGCTTGGCAAAATAATTGTTTTGATCTCAACTTACTGCCAACAAAG
TTTTAAAAAAAATATATGGAAATGTCCGATTTCTGGATTTTCAATCGCAT
TAATAGAAATAAAAGTATTGAAGTTCTTGGCATAATGGTTCTTTTGATAT
CAAATGTGAACAATAGTCCTCCTTTGGAAACACTCTAATGAAGAACAAGA
CTGAAAAGTAATCCTTGCTAGTGAAGAACAAGCCTGAAAGGTAATCCTTG
CTAATGAAGAACAAGCCTGAAAGGTAATCCTTACCTCAGCGTTGGAAACT
ACAAAGCTTTCTGTGCAAAAGGGCAAGAGAATGTCTCTGTGCTCTCCTGT
TGTTTGCAGCATATTGCTCTACCCGGTACCTTTATTCCTTTGAAAAACAT
CACATATGTACCCAAACAAGGACTATGGATCAGTATCACTTGGTTCTTTG
TAATTTTTTACCTTAAAAGATTAGCCACCGTACCTATGTTTTCAGCTACA
CTTCAGAATGAATCGTTTTGATGTCTAGAGCATAGGTGAGTGGGTTACTT
GCACTAAAAGAGCAAGTGGTGACCTTTGTCTCCTCCCTTGGTCAGGAGAA
TGATATGTGAAAGATAGCTGCTGTATGACAGACTGGGTGATGCTATCTCT
GTCTCCCTACTTGCAGATTTTAGAGACTTATCTGGTATTCCTATTATTGG
GATGGAGAGGTGTTGTGGATCAATTCATCTGTATGCCACAGCCCAAGGTG
GTGCCCATCTGTTCTTTGATTTAGTGTCAGGGAGGGTCTTGTATTCCATG
TTGAAAACAAAATTGAGAGGCAATATTTTGTATTACTCACTGAACTTTCA
TGAGTGCAAATACTTGAAAAAAAATCTTGAAGAGATCTTACTACACATTA
TTTCACCATGATTTTTTCTAAGTTGCTTGTTTTGTTTCAATTATTTTGTT
CTTTATTTCACAGCCCAAAAAAATCATTTATATTTATATTTATGTGTATG
TATAGATATCTCTGTGGGGTGTCTATTTTGAATGACCTTGTCCTATTGTG
TCTGTCACTGTTACTACACTGGGTGGGGGGACATCCAGGAGAGATTCCTA
CAGGGAAATATATCAGCCAAGATAGGGGAAATCTTGGAGGGAGAAGGAAG
AAGCGGGGGAGTGGGGGAGCAGGCGGTGCGCTGGAGCTGGCTATGGGGGC
TGTTGGTCAAAGTATGTCAATATCATCATCTGGCAAGAAGAAGTCCAGAC
TCAAATGAGGGCCTTCATTGTCTTTAAGTGTGTCTTTCTCCATGTGGCAA
TAAAAGTATGCTCATTTCTGGAGGCTGGCAGCGCTCTGGAGTTGTTCTAG
AGGATAGATGTTCCAGAGGACAGTTGCCCCCCTCCCTTTGCCATGGCCTA
TGTATGTAGATGTGCTGATTAGAATCACTGGACTTGGAGTTTCCTTGAAG
ATACCTTCTGTGCCTTTCCTGGACTTCCCTTGATATTTGTGGCATGCTTG
CTAGAAGGCTGACTCTGCATACAACACCGTCTCTGTCGTGATGATCCTGA
TTTTGTACTGTAGATCGATTCAGACCACTCTCAATAATTTCCTATTCCCT
ATTGGTGAGTGTGGTAATTCTTGACACACTCAGATTGAAAAAGATAATAC
ATTTACTTGTAGGGGTGCTAGAAGAGGTGGAGGTGATTTGCTGGTAGTGT
CAAGGCAAGGTTCATTTGGAATCTTGATAGAAAACAGATCGTTATATACT
ACCCTTGATTGCAACAGTGACTTGTCTCATTGCACTTGAGTTCAGGGTAG
TATATAACGATAGGGGAGGTGGCTGAATCTTGGAGGATTCTTGAGATGGA
GCTGTGAGGGAGAGTTGCAAGGTGGATGCACCCTGTTGACTCAATGTGCC
ATATAGAAATGTGCTTTTTTGTATCCTGTGGAAGATGCTGATACATCAAT
GTATTTTATGGGGGTTGAATTTCAACCCCACTATTTTTTAACCAGACTCA
TATTGATGCCCAGTCGGAAAGAGTCAAGTCTCGAAAATTTGGGTGTGTTT
TCCTCGTATATGAAACAAAATCAACATTTCCTTTAACGTACTAGGATTTT
GGGAGCTAGGAGCCTAGCTAATGATTCTCAAGCAGGTATGGTGGTGTGCA
CATATGCATTTTTCATCTTGTGGACCTTTGAGAGAAGGTGTTCCCATACC
CCCATTGTCACGTGGATGTTGTGAAACTGACTACAGTGCTTTACATCCCT
CTGTCTGTGTTCTCACTTGTAGTAGAGTTATAGTAGTAGTGGTATTACAG
ATGGAAATAGTTGGTAGGAAACAAAGTTTTTAGACTGCTTTTTTTTCATT
TTTTGGGAGGCATGATTTTATATTCTGTCTCATTCTTTTCTGCATCACTG
GAAAAGTCTTCACAATCTATTGACAGTTATTGGAAACAAAAATGAGCATG
GTGTACCAGAGTGGTTGCACAGCTGAAGGTGGAAATTTTGGGGGGTTGCC
GATTGGGTTTGGAATAATTTCAACCTGGTGAAATTCCATGTAGCACCTGA
TCCCCCCATGTGGTAGGTAGCAACTGTATGTGGTACTCAATGCTATCAGA
TCTGCACAGTTCAAAAGTACTTCACGAGATGTATGTGATACCACAAAAGG
GTATCACGTCACAATTGAGGTTCTGAGGATTTTGTGACAGGCTGGACCAT
GGTATGGGGAAGTATAAACTCAGAAAGAATGTGAACAAAGGGGTGAAGAC
AAGGCTCGAGTTGCTTGCCATAAGTGAAGCTGCCAAACTTGCTTGAATGA
AGAAGTTGAACCTGAAGAGAGTTAAGGACGATGGACAGAGGAAACTAAGG
GAAAAGAAAACAAAATTTGGAGAGGCCATCAATTGCTGTTGCTGCTCATG
GTGCTGGTGTTGGTAGTGTGTATGTTGAGGATTTACATAAAGAGTTAAGG
AGTATATCCGAGTATTAAATTTGGAATGATGTTGTAATGGTATTTAATTG
CAGGCAACAGGACCGACAATGG
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Coding sequence (CDS) from alignment at C-tenellus_contig7642:1324..5345+

>mRNA_C-tenellus_contig7642.2.1 ID=mRNA_C-tenellus_contig7642.2.1|Name=mRNA_C-tenellus_contig7642.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=285bp|location=Sequence derived from alignment at C-tenellus_contig7642:1324..5345+ (Choristocarpus tenellus KU2346)
ATGACCAGAAAGGGCAAGAAGGAACGGAGGAATTTGGAGAAGGAGGCAGA
TCGATTGGAGACCATAGCCGATGTTGGCAATGCAGTAGACTTTGTTAGGG
TTGCTCGAGAGGCAGGAGAGATTCCTACAGGGAAATATATCAGCCAAGAT
AGGGGAAATCTTGGAGGGAGAAGGAAGAAGCGGGGGAGTGGGGGAGCAGG
CGGTGCGCTGGAGCTGGCTATGGGGGCTGTTGGTCAAAGTATGTCAATAT
CATCATCTGGCAAGAAGAAGTCCAGACTCAAATGA
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