mRNA_C-tenellus_contig7638.3.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7638.3.1
Unique NamemRNA_C-tenellus_contig7638.3.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig7638.3.1 vs. uniprot
Match: D7FSB4_ECTSI (Palmitoyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSB4_ECTSI)

HSP 1 Score: 145 bits (367), Expect = 5.180e-36
Identity = 79/159 (49.69%), Postives = 99/159 (62.26%), Query Frame = 3 
Query:  171 AAAERISLLEG--------------DEDG---VVKTVPGLESTDTGTLDATTLLRQLFVAVNSKNAEAVTKLCSSGNEELPSVVRTRDSQGHSLMHWAAKGGNVGIIEALADAGCPTGEVSEDNVXXXXXXXXXTEGRLMASAWLLGPGGVQADGRDKQ 596
            AAAER+SL+                D DG   VV+T PG ESTDTG L   T+  QL VAV +++   + +LCSS +E LP+ ++ RD QGH+LMHWAAK G+V ++E LA+AGCP  E S+D V         TEGRL ASAWLLGPGG   +GRD Q
Sbjct:  102 AAAERLSLIAPMMAGAXXXXXXXVMDMDGMANVVRTAPGAESTDTGALSEATIASQLLVAVRTRDVATLRRLCSSTSEHLPAALKRRDGQGHTLMHWAAKSGDVAMLELLANAGCPPNEFSKDPVGMSPLHWAATEGRLRASAWLLGPGGADPEGRDNQ 260
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BLAST of mRNA_C-tenellus_contig7638.3.1 vs. uniprot
Match: A0A836CCL2_9STRA (Spc98 family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCL2_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 7.630e-17
Identity = 54/128 (42.19%), Postives = 70/128 (54.69%), Query Frame = 3 
Query:  216 VVKTVPGLESTDTGTLDATTLLRQLFVAVNSKNAEAVTKLCSS-GNEELPSVVRTRDSQGHSLMHWAAKGGNVGIIEALADAGCPTGEVSEDNVXXXXXXXXXTEGRLMASAWLLGPGGVQADGRDKQ 596
            V+ TVPGLESTD G  D   L+RQL++AV   +A+A  ++     N     +++  D  GHSLMHWAAK G+V ++E L  AG P    S+D V         TEG L A  WL    G   D RD+Q
Sbjct: 1105 VITTVPGLESTDVGESDPEALMRQLYLAVRMGHAQAAGQVIEKLKNRNALDMLKEPDHDGHSLMHWAAKSGDVQLMELLLLAGSPLAVPSQDPVGMYPMHWTCTEGHLKALKWLRSR-GADVDCRDRQ 1231
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BLAST of mRNA_C-tenellus_contig7638.3.1 vs. uniprot
Match: A0A6U0TF19_9STRA (Palmitoyltransferase n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A6U0TF19_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 5.950e-5
Identity = 30/74 (40.54%), Postives = 42/74 (56.76%), Query Frame = 3 
Query:  276 LLRQLFVAVNSKNAEAVTKLCSS-GNEELPSVVRTRDSQGHSLMHWAAKGGNVGIIEALADAGCPTGEVSEDNV 494
            LL+ +F A      +AV  L        L +++  RDSQGH+L HWAA+ G V I++ L D G P  E S+D+V
Sbjct:   16 LLKDVFEATKMGYVQAVKALLRGVPKPRLAALLARRDSQGHTLAHWAAQAGKVPILQLLNDMGAPMFEKSDDDV 89
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7638.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FSB4_ECTSI5.180e-3649.69Palmitoyltransferase n=2 Tax=Ectocarpus TaxID=2879... [more]
A0A836CCL2_9STRA7.630e-1742.19Spc98 family-domain-containing protein n=1 Tax=Tri... [more]
A0A6U0TF19_9STRA5.950e-540.54Palmitoyltransferase n=1 Tax=Pinguiococcus pyrenoi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7638contigC-tenellus_contig7638:4036..6630 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FSB4
PFAMsAnk_2,Ank_4,DHHC
Model size826
Max annot lvl2759|Eukaryota
KEGG koko:K20032
KEGG TC9.B.37.1,9.B.37.3
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.13e-37
EggNOG OGsCOG5273@1|root,KOG0509@2759|Eukaryota
Ec32 ortholog descriptionmembrane-localised ankyrin repeat palmitoyltransferase
Ec32 orthologEc-20_004890.1
EC2.3.1.225
Descriptionprotein-cysteine S-palmitoyltransferase activity
Cds size630
COG categoryZ
BRITEko00000,ko01000,ko04131
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790049.004257-UTR-C-tenellus_contig7638:4035..41301680790049.004257-UTR-C-tenellus_contig7638:4035..4130Choristocarpus tenellus KU2346UTRC-tenellus_contig7638 4036..4130 +
1680790049.0523336-UTR-C-tenellus_contig7638:6529..66301680790049.0523336-UTR-C-tenellus_contig7638:6529..6630Choristocarpus tenellus KU2346UTRC-tenellus_contig7638 6530..6630 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790049.0174844-CDS-C-tenellus_contig7638:4130..43011680790049.0174844-CDS-C-tenellus_contig7638:4130..4301Choristocarpus tenellus KU2346CDSC-tenellus_contig7638 4131..4301 +
1680790049.0297003-CDS-C-tenellus_contig7638:4918..51051680790049.0297003-CDS-C-tenellus_contig7638:4918..5105Choristocarpus tenellus KU2346CDSC-tenellus_contig7638 4919..5105 +
1680790049.039125-CDS-C-tenellus_contig7638:6257..65291680790049.039125-CDS-C-tenellus_contig7638:6257..6529Choristocarpus tenellus KU2346CDSC-tenellus_contig7638 6258..6529 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7638.3.1prot_C-tenellus_contig7638.3.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7638 4131..6529 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7638.3.1

>prot_C-tenellus_contig7638.3.1 ID=prot_C-tenellus_contig7638.3.1|Name=mRNA_C-tenellus_contig7638.3.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=210bp
MPVVGHSSAVLPRDFSSSLNYSQERAAAERISLLEGDEDGVVKTVPGLES
TDTGTLDATTLLRQLFVAVNSKNAEAVTKLCSSGNEELPSVVRTRDSQGH
SLMHWAAKGGNVGIIEALADAGCPTGEVSEDNVGMSPLHWAATEGRLMAS
AWLLGPGGVQADGRDKQAREKQSTVLFLLKFRGLLGPGMQELVQCVGVVY
WEIVRAYRV*
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mRNA from alignment at C-tenellus_contig7638:4036..6630+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7638.3.1 ID=mRNA_C-tenellus_contig7638.3.1|Name=mRNA_C-tenellus_contig7638.3.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2595bp|location=Sequence derived from alignment at C-tenellus_contig7638:4036..6630+ (Choristocarpus tenellus KU2346)
GCAATCAGTGTTGCTCACATGAAGCACCCCCGCCAGTGCGGTATGATCAA
ACCAATGCGGTTATTACTCAGCAGCAACTTGGAACAGGTTTGGACATGCC
TGTGGTTGGACATTCTTCGGCAGTGTTGCCACGGGACTTCAGCAGTTCTC
TGAATTATTCCCAGGAAAGGGCAGCCGCCGAGAGGATTTCTCTTTTAGAG
GGAGATGAGGATGGAGTTGTGAAGACTGTGCCAGGTTTAGAAAGCACTGA
TACTGGGACATTGGATGTGAGTGCTGACCTGTTCTAAGTACTTCCTGGTG
TGAGTAGTAACGCCGCAGTTTGATTTTCAGCCAAGGGAAGTAGAGGTCAG
CAATACTGTAAGATATGAACTCCTGGCCCTTGAACTCCTGGACCTAGATG
TGTATTTTTTGATGTGAAAACCAATCAGGTATTTGTTGTCCAACCAATAT
GCACCGCTTGTCAGTGACAGGGAGTGACCGTACCGCTGCTATAGTCTCGA
TACCTCAAGACTATCCACACTACCCACGCTATTTTCTGGGACCGCACCTA
TCAATACAAGATGCCTTTGGATTTCAGTGATCCGATCTGGGATTTCTTGC
TTGAACAGGAAGCACGCGATACTAATATTATTACTAACCTGATGCAGTCA
TTGGCTTCCCCATCTCAACACATCAGCGGAGCTTGATTACCAATCCTTTG
GTACTTCTTAAACCACTGTCACTTGAAGCCCGAACTTCGGTTGGTCAGTT
GGCTGTGGAACGAGCGCATCTGCCATGCTCCATACTCTCGAACACTCTCG
AACACTCTCGTTACTTCTCGAGACGCCATCGCACTTCGTATAACCCTAAA
TTGAAACCCTTCTCTCCCCCCTCCAATTTCAAGGCGACAACCCTCCTGAG
ACAGTTATTCGTGGCTGTGAACTCCAAGAACGCCGAGGCGGTCACTAAGC
TGTGCTCATCTGGGAACGAGGAGCTTCCCTCTGTTGTTCGCACAAGGGAC
TCCCAGGGGCATTCCCTGATGCACTGGGCAGCTAAGGGTGGAAATGTTGG
GATAATAGAAGCATTGGCTGGTGAGACTTGTGAATATAGCGTCCTCTGTG
ATAGTACAACTTTCTTAGGAGTTGCGTACGCCAATGCGGGATCAATACCA
TCTCAATAATCGCTTCCGAATTGCTCACTATCACTCCCTCTTGAAGGATG
AACACAGTGGTTAAGTTGGCAGTTATTCCTCCTGTAAATTCCCTTTTTGT
TGTTCTTGTCTGCTGAGTGCCGTTTTTGTTTTTTGGAGTGAAATGGAGAT
TCCTTGGCATACTCCCAAACTTCAAGTACTGAGTACTTTGCATTTTTTCG
TTGTTTTTATGCTGTACTTTGTTTATTCTCTCCCTACCTCCCCCCACCCC
TCTCTCTCTCGCTCTGCCTGTCATGATTGCGTTTTTGAAATTTTGCTGAG
GCAACGCACACATGAAGCAACACTGAATTTGTTGTCCACACCTTTGAAAT
GTTTTTTTTTTTTGTGCTTGCTGTTTCATTCGCATGTGTCATTCCTTTAT
TAGGTATGTGAGGGACGTCATGTGTCACTGACATATTTTATTTATTTTAT
CTGTATTTTTTTTAATACATGGTAAACGTGTGCAGTAGGGACATTGCAAT
TTTTCAGTTTCTTAGGTTTCCTTTGATGGTTGTTCCTATATTATAGAGGC
GAATTTACCACACACACACACACACAGAATTGTAACATAAAAAGTGCATA
AATCCAGGAACGTATATTCTCAAGTATATTCTGACTGTACAGTGGTAGTA
TATAGTCCACTGCTGGTGTTTTCCTTATCAACATGTCATGCTGCAGTATG
AAAATTGTATGTAGTGTTAAGGTATGCCATATTTGAATGCTCATGATGTT
GTGAGAATTCACTTTTAGATTGAGTTTGAGTCTCTTCAATATATAGTTTT
TGAAGTCGTTACATTTTTTCCTACTGCCCTATGCCTGTCATGTGTATAGC
CATAGCCATACACATACCCATCCTGTTCAGAAAAATCATTGTTTTGCAAT
AGTTACAATAAGATTGTGCCATGGACTTGATCACACTCCTGCTCACATAT
GCACTTGTCTGTTTACATACGTGTATGCATTTTGCGCCCTATTGCTTTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTATTTGTGTCCCATGGTGCTCTT
GAAACTGTAACCTCTTGGTAAGATGCGGGTTGTCCAACAGGAGAGGTGAG
CGAAGACAATGTTGGCATGTCACCGTTGCACTGGGCAGCAACAGAGGGGC
GTTTGATGGCCTCGGCGTGGCTGCTGGGGCCAGGGGGAGTTCAGGCCGAT
GGTCGAGATAAGCAGGCAAGGGAAAAACAGTCAACTGTTTTGTTCTTGTT
GAAGTTCAGAGGTCTGTTGGGGCCAGGCATGCAGGAGTTGGTGCAGTGTG
TGGGTGTTGTGTATTGGGAGATTGTTAGGGCATACAGAGTATAGTGTTGA
GGTTGGCCGAGTTAGGGTTAGGGACGGACTTTTTTTTAAAGCATTTTTTT
TGTGCCTGTCTGTGGGGGTAGGGTATCCCTCTTCCCTTGAGAAGC
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Coding sequence (CDS) from alignment at C-tenellus_contig7638:4036..6630+

>mRNA_C-tenellus_contig7638.3.1 ID=mRNA_C-tenellus_contig7638.3.1|Name=mRNA_C-tenellus_contig7638.3.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=630bp|location=Sequence derived from alignment at C-tenellus_contig7638:4036..6630+ (Choristocarpus tenellus KU2346)
ATGCCTGTGGTTGGACATTCTTCGGCAGTGTTGCCACGGGACTTCAGCAG
TTCTCTGAATTATTCCCAGGAAAGGGCAGCCGCCGAGAGGATTTCTCTTT
TAGAGGGAGATGAGGATGGAGTTGTGAAGACTGTGCCAGGTTTAGAAAGC
ACTGATACTGGGACATTGGATGCGACAACCCTCCTGAGACAGTTATTCGT
GGCTGTGAACTCCAAGAACGCCGAGGCGGTCACTAAGCTGTGCTCATCTG
GGAACGAGGAGCTTCCCTCTGTTGTTCGCACAAGGGACTCCCAGGGGCAT
TCCCTGATGCACTGGGCAGCTAAGGGTGGAAATGTTGGGATAATAGAAGC
ATTGGCTGATGCGGGTTGTCCAACAGGAGAGGTGAGCGAAGACAATGTTG
GCATGTCACCGTTGCACTGGGCAGCAACAGAGGGGCGTTTGATGGCCTCG
GCGTGGCTGCTGGGGCCAGGGGGAGTTCAGGCCGATGGTCGAGATAAGCA
GGCAAGGGAAAAACAGTCAACTGTTTTGTTCTTGTTGAAGTTCAGAGGTC
TGTTGGGGCCAGGCATGCAGGAGTTGGTGCAGTGTGTGGGTGTTGTGTAT
TGGGAGATTGTTAGGGCATACAGAGTATAG
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