mRNA_C-tenellus_contig7624.2.1 (mRNA) Choristocarpus tenellus KU2346
Overview
Homology
BLAST of mRNA_C-tenellus_contig7624.2.1 vs. uniprot
Match: D8LQ11_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQ11_ECTSI) HSP 1 Score: 205 bits (522), Expect = 1.460e-56 Identity = 106/165 (64.24%), Postives = 125/165 (75.76%), Query Frame = 3 Query: 27 LILPLDKDLREYCGYVEAM-----------DGPGTAVDLGSFRCDPELSQLLQEKGVARTLQPRLAQVGNLEGFMAELKDVVEKVLRSSPEQEPPPAEFYTRLVSEIDAVGWTHLVSMDSMLTALQLRARDKAGREHVLALSIPSDYPLTPPACFADLPKPLDLR 488 LILPLD R + GYVEAM G VDL SFRCDPELS LL+ +GV TL+ RLAQ ++EGFMAEL DV+EKVLRS P+Q+PPPAEFY+RLVSEIDAVGW+HLVSMDS+LT++QLR RD AGREHV A+S+PS+YP +PP C DLP L+LR Sbjct: 4 LILPLDPSQRHFGGYVEAMGRQYRVSMACPQGRRGIVDLASFRCDPELSALLEARGVWDTLRARLAQTEDVEGFMAELTDVLEKVLRSCPKQDPPPAEFYSRLVSEIDAVGWSHLVSMDSLLTSVQLRERDAAGREHVFAISLPSNYPHSPPICSVDLPTHLNLR 168
BLAST of mRNA_C-tenellus_contig7624.2.1 vs. uniprot
Match: A0A835YLD4_9STRA (WD-repeat region-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLD4_9STRA) HSP 1 Score: 155 bits (391), Expect = 2.550e-38 Identity = 76/165 (46.06%), Postives = 105/165 (63.64%), Query Frame = 3 Query: 24 SLILPLDKDLREYCGYVEAMD----------GPGTAVDLGSFRCDPELSQLLQEKGVARTLQPRLAQVGNLEGFMAELKDVVEKVLRSSPEQEPPPAEFYTRLVSEIDAVGWTHLVSMDSMLTALQLRARDKAGREHVLALSIPSDYPLTPPACFADLPKPLDLR 488 S +LP + EYCG++EA+ PG VD +F CD ELSQ+L G L+ RLAQ + F+AEL+DV++++LR++P+ P PA +Y+RLV+EID VGW HLV++ L+ LQLR D AGR HV+ +++P DYP T P C ADLP P L+ Sbjct: 15 SALLPCNATCTEYCGFIEALGRQFRIKIRLKSPGGQVDAEAFACDAELSQILTSAGALPALRLRLAQTPDPASFVAELQDVLQRLLRAAPQSAPAPAAYYSRLVAEIDKVGWEHLVTISERLSHLQLRVSDAAGRHHVIGVTMPPDYPRTAPTCVADLPAPFALQ 179
BLAST of mRNA_C-tenellus_contig7624.2.1 vs. uniprot
Match: A0A6J2V969_CHACN (E3 ubiquitin-protein ligase FANCL n=1 Tax=Chanos chanos TaxID=29144 RepID=A0A6J2V969_CHACN) HSP 1 Score: 106 bits (264), Expect = 2.620e-21 Identity = 57/163 (34.97%), Postives = 93/163 (57.06%), Query Frame = 3 Query: 27 LILPLDKDLREYCGYVEAMD---------GPGTAVDLGSFRCDPELSQLLQEKGVARTLQPRLAQVGNLEGFMAELKDVVEKVLRSSPE-QEPPPAEFYTRLVSEIDAVGWTHLVSMDSMLTALQLRARDKAGREHVLALSIPSDYPLTPPACFADLPKPLDL 485 L++PL+KD Y G++ D G+ + +F C EL +LL +G + ++ RL Q +L F+ ELK V E L+ PE Q PP ++Y+RL++E++A+GW L+ +D+ L+L+ D +GR+H + + + +YP P C ADLP PL + Sbjct: 12 LLVPLNKDKTVYDGFITVQDRDFRIRISLAQGSQLKQATFHCCWELRRLL--RGYQQIVKQRLHQSPDLVSFILELKAVTEVALKHRPECQTIPPPQYYSRLITEMEALGWDKLLFIDTEFRTLKLKGEDSSGRQHAITVHLKPEYPAEAPECSADLPVPLTI 172
BLAST of mRNA_C-tenellus_contig7624.2.1 vs. uniprot
Match: UPI00188991F3 (E3 ubiquitin-protein ligase FANCL isoform X3 n=2 Tax=Pungitius pungitius TaxID=134920 RepID=UPI00188991F3) HSP 1 Score: 104 bits (259), Expect = 9.890e-21 Identity = 66/169 (39.05%), Postives = 97/169 (57.40%), Query Frame = 3 Query: 9 RDRPDSLILPLDKDLREYCGYVEAMDGP-GTAVDL---GSFR-----CDPELSQLLQEKGVARTLQPRLAQVGNLEGFMAELKDVVEKVLRSSPEQEP-PPAEFYTRLVSEIDAVGWTHLVSMDSMLTALQLRARDKAGREHVLALSIPSDYPLTPPACFADLPKPLDL 485 RD P L+LPL+K+ Y G+V + V L G F+ C +L LLQ G ++ RL Q +L F+ ELK V+E L+S PE+ PP ++YTRL+SE++ +GW L+ +D+ L+L+A D +GR+HVL + + + +P P C ADLP PL L Sbjct: 7 RDNP--LLLPLNKEKTLYDGFVTVQERDFRLRVQLPAEGQFKGARLHCCWQLKHLLQ--GYEHIVKQRLQQSADLVTFVLELKTVLEVCLKSCPERRSIPPPQYYTRLISEMETLGWGRLLFIDTEFRMLRLKAEDSSGRQHVLTVKLRAKHPAEAPECSADLPVPLAL 171
BLAST of mRNA_C-tenellus_contig7624.2.1 vs. uniprot
Match: H2S4L6_TAKRU (RING-type domain-containing protein n=3 Tax=Takifugu TaxID=31032 RepID=H2S4L6_TAKRU) HSP 1 Score: 104 bits (259), Expect = 1.300e-20 Identity = 57/161 (35.40%), Postives = 92/161 (57.14%), Query Frame = 3 Query: 27 LILPLDKDLREYCGYVEAMDG---------PGTAVDLGSFRCDPELSQLLQEKGVARTLQPRLAQVGNLEGFMAELKDVVEKVLRSSPE-QEPPPAEFYTRLVSEIDAVGWTHLVSMDSMLTALQLRARDKAGREHVLALSIPSDYPLTPPACFADLPKPL 479 ++LPL+K+ Y G++ + P + G C +L LL +G +T++ RL Q NL F+ ELK ++E L+S PE Q PP ++Y++L+SE++ +GW+ L+ +D+ LQL A D +GR+H+L + + +P P C ADLP PL Sbjct: 16 VLLPLNKEKTIYGGFITVQERDFRVRITLPPDRKITGGRLHCCWQLKHLL--RGYEQTVKQRLQQSDNLVTFILELKTILEVGLKSFPEHQSIPPPQYYSQLISEMETLGWSKLLFIDTAFQTLQLNAEDSSGRQHLLTVKLKPKHPAEAPDCSADLPLPL 174
BLAST of mRNA_C-tenellus_contig7624.2.1 vs. uniprot
Match: H3D7A8_TETNG (FA complementation group L n=2 Tax=Tetraodon nigroviridis TaxID=99883 RepID=H3D7A8_TETNG) HSP 1 Score: 104 bits (259), Expect = 1.340e-20 Identity = 62/170 (36.47%), Postives = 99/170 (58.24%), Query Frame = 3 Query: 9 RDRPDSLILPLDKDLREYCGY--VEAMDG-------PGTAVDLGSFRCDPELSQLLQEKGVARTLQPRLAQVGNLEGFMAELKDVVEKVLRSSPEQEP-PPAEFYTRLVSEIDAVGWTHLVSMDSMLTALQLRARDKAGREHVLALSIPSDYPLTPPACFADLPKPLDLR 488 +D P L+LPL+K+ Y G+ V+A D P + G C +L LL +G +T++ RL Q +L F+ ELK ++E L+S PE+ PP ++Y++L+SE++ +GW+ L+ +D+ L+L A D +GR+H+L + + S +P P C ADLP PL L Sbjct: 10 KDNP--LLLPLNKEKTVYDGFITVQARDSGLEITLPPDGQLSGGRLHCCWQLKHLL--RGYEQTVKQRLQQSEDLVTFILELKTILEVGLKSFPERRSIPPPQYYSQLISEMETLGWSKLLFIDTAFQTLKLDAEDSSGRQHILTVKLKSKHPFEAPDCSADLPIPLLLN 175
BLAST of mRNA_C-tenellus_contig7624.2.1 vs. uniprot
Match: UPI00188946AC (E3 ubiquitin-protein ligase FANCL isoform X1 n=2 Tax=Pungitius pungitius TaxID=134920 RepID=UPI00188946AC) HSP 1 Score: 104 bits (259), Expect = 1.480e-20 Identity = 66/169 (39.05%), Postives = 97/169 (57.40%), Query Frame = 3 Query: 9 RDRPDSLILPLDKDLREYCGYVEAMDGP-GTAVDL---GSFR-----CDPELSQLLQEKGVARTLQPRLAQVGNLEGFMAELKDVVEKVLRSSPEQEP-PPAEFYTRLVSEIDAVGWTHLVSMDSMLTALQLRARDKAGREHVLALSIPSDYPLTPPACFADLPKPLDL 485 RD P L+LPL+K+ Y G+V + V L G F+ C +L LLQ G ++ RL Q +L F+ ELK V+E L+S PE+ PP ++YTRL+SE++ +GW L+ +D+ L+L+A D +GR+HVL + + + +P P C ADLP PL L Sbjct: 7 RDNP--LLLPLNKEKTLYDGFVTVQERDFRLRVQLPAEGQFKGARLHCCWQLKHLLQ--GYEHIVKQRLQQSADLVTFVLELKTVLEVCLKSCPERRSIPPPQYYTRLISEMETLGWGRLLFIDTEFRMLRLKAEDSSGRQHVLTVKLRAKHPAEAPECSADLPVPLAL 171
BLAST of mRNA_C-tenellus_contig7624.2.1 vs. uniprot
Match: A0A2R6WJG8_MARPO (Uncharacterized protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6WJG8_MARPO) HSP 1 Score: 102 bits (254), Expect = 5.780e-20 Identity = 56/167 (33.53%), Postives = 91/167 (54.49%), Query Frame = 3 Query: 21 DSLILPLDKDL-----------REYCGYVEAMDGPGTAVDLGSFRCDPELSQLLQEKGVARTLQPRLAQVGNLEGFMAELKDVVEKVLRSSPEQEPPPAEFYTRLVSEIDAVGWTHLVSMDSMLTALQLRARDKAGREHVLALSIPSDYPLTPPACFADLPKPLDLR 488 + L LPL+ D +E+ V + ++ C+ EL +L +GV +Q RL Q +L F+ ELKD++E+++R+ P P FY++L + +D+VGW HL+ + L++L LR D AGREH++ + +P +P P A+LP P+DLR Sbjct: 2 EPLFLPLNCDFTAYHVLLPMQGKEFSFSVHNIPRDKASLQHAMLECNEELRTIL--RGVEPVVQERLKQSYDLSTFVLELKDILERIVRTQPFVSLPTPAFYSQLCANLDSVGWEHLIWLSDELSSLHLRIFDSAGREHIVLVDLPPGFPEVAPTASANLPIPVDLR 166
BLAST of mRNA_C-tenellus_contig7624.2.1 vs. uniprot
Match: A0A2P6NXE8_9EUKA (E3 ubiquitin-protein ligase FANCL n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NXE8_9EUKA) HSP 1 Score: 100 bits (249), Expect = 1.710e-19 Identity = 64/160 (40.00%), Postives = 85/160 (53.12%), Query Frame = 3 Query: 30 ILPLDKDLREYCGYV-----------EAMDGPGTAVDLGSFRCDPELSQLLQEKGVARTLQPRLAQVGNLEGFMAELKDVVEKVLRSSPEQE-PPPAEFYTRLVSEIDAVGWTHLVSMDSMLTALQLRARDKAGREHVLALSIPSDYPLTPPACFADLPK 473 +L LD + + G+V E +GP D C ELS LL KG+ RL Q NL F+ ELKD+V+ +L S E+ PPAEFY+RL+ E+D +GW LV +D LT +QL D R H++ L+IP +YP PP DLPK Sbjct: 10 LLQLDPEGHRWRGFVSIQGKDFLLAIELPNGPQNLKD-AELSCGEELSTLL--KGME---DKRLNQSKNLTSFLMELKDLVQGLLISEEEKTFKPPAEFYSRLMMEMDTIGWNRLVHIDKTLTNIQLNTYDSRNRNHIVQLTIPKNYPSYPPQVTFDLPK 163
BLAST of mRNA_C-tenellus_contig7624.2.1 vs. uniprot
Match: UPI00112EEF00 (E3 ubiquitin-protein ligase FANCL isoform X1 n=3 Tax=Rhinatrema bivittatum TaxID=194408 RepID=UPI00112EEF00) HSP 1 Score: 99.0 bits (245), Expect = 8.350e-19 Identity = 56/166 (33.73%), Postives = 91/166 (54.82%), Query Frame = 3 Query: 27 LILPLDKDLREYCGYVEAMDGPGTAVDLGSF------------RCDPELSQLLQEKGVARTLQPRLAQVGNLEGFMAELKDVVEKVLRSSPE-QEPPPAEFYTRLVSEIDAVGWTHLVSMDSMLTALQLRARDKAGREHVLALSIPSDYPLTPPACFADLPKPLDL 485 L+LP +K+ Y G++ A+ G L F +C L +L G + ++ RL +L FM ELK ++E L++ E PPP ++Y+ LV +I+ +GW LV +D+ L+ ++L+ D AGREH++ L + ++YPL PP CF D P P ++ Sbjct: 13 LLLPQNKEKTIYDGFITAL---GRDFRLRVFLPSDFQLQNARLQCSVHLKNVLH--GYHQIVKQRLQHSCDLGSFMLELKTILEAALKNKRELNAPPPPQYYSCLVKDIENLGWDKLVFVDTELSTIRLKVEDSAGREHLITLHLKANYPLEPPDCFVDFPVPFEI 173 The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7624.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-tenellus_contig7624.2.1 >prot_C-tenellus_contig7624.2.1 ID=prot_C-tenellus_contig7624.2.1|Name=mRNA_C-tenellus_contig7624.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=137bp MDGPGTAVDLGSFRCDPELSQLLQEKGVARTLQPRLAQVGNLEGFMAELKback to top mRNA from alignment at C-tenellus_contig7624:2474..6264+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-tenellus_contig7624.2.1 ID=mRNA_C-tenellus_contig7624.2.1|Name=mRNA_C-tenellus_contig7624.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=3791bp|location=Sequence derived from alignment at C-tenellus_contig7624:2474..6264+ (Choristocarpus tenellus KU2346)back to top Coding sequence (CDS) from alignment at C-tenellus_contig7624:2474..6264+ >mRNA_C-tenellus_contig7624.2.1 ID=mRNA_C-tenellus_contig7624.2.1|Name=mRNA_C-tenellus_contig7624.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=411bp|location=Sequence derived from alignment at C-tenellus_contig7624:2474..6264+ (Choristocarpus tenellus KU2346)back to top |