mRNA_C-tenellus_contig7616.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7616.2.1
Unique NamemRNA_C-tenellus_contig7616.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig7616.2.1 vs. uniprot
Match: D7FKU9_ECTSI (Derlin n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKU9_ECTSI)

HSP 1 Score: 122 bits (307), Expect = 3.750e-32
Identity = 53/64 (82.81%), Postives = 57/64 (89.06%), Query Frame = 1 
Query:    1 AAVLQEQGQPAAAIPHLLGIFCGHVYHFFTVVHPLMGAKKRLGAPNWMKRRIDGGDNPNFMEAP 192
            AAVLQ +G P AAIPH +GI CGHVYHFFTVVHPLMGAK+RLGAP WMKRR+DGGDNPNFME P
Sbjct:  256 AAVLQAEGSPLAAIPHFVGILCGHVYHFFTVVHPLMGAKRRLGAPGWMKRRLDGGDNPNFMETP 319
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BLAST of mRNA_C-tenellus_contig7616.2.1 vs. uniprot
Match: A0A6U1QM22_9STRA (Derlin n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1QM22_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 1.310e-8
Identity = 26/51 (50.98%), Postives = 35/51 (68.63%), Query Frame = 1 
Query:    7 VLQEQGQPAAAIPHLLGIFCGHVYHFFTVVHPLMGAKKRLGAPNWMKRRID 159
            +LQ Q   AA IPH+ G   GH YHFF  ++PL+G +K L APN++KR +D
Sbjct:  237 ILQAQSI-AAGIPHVFGFLTGHFYHFFYRIYPLLGGRKLLEAPNFLKRMLD 286
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BLAST of mRNA_C-tenellus_contig7616.2.1 vs. uniprot
Match: A0A7S2G1G6_9STRA (Derlin n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G1G6_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 2.080e-7
Identity = 26/48 (54.17%), Postives = 31/48 (64.58%), Query Frame = 1 
Query:   19 QGQPAA-AIPHLLGIFCGHVYHFFTVVHPLMGAKKRLGAPNWMKRRID 159
            Q Q AA A+PH+LGI  GHVYHFFT V P MG K+ L  P   K  ++
Sbjct:   57 QAQSAAGAVPHVLGILTGHVYHFFTCVWPSMGGKRYLTPPKAFKSMVE 104
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BLAST of mRNA_C-tenellus_contig7616.2.1 vs. uniprot
Match: A0A200QPV6_9MAGN (Derlin n=1 Tax=Macleaya cordata TaxID=56857 RepID=A0A200QPV6_9MAGN)

HSP 1 Score: 53.9 bits (128), Expect = 5.850e-7
Identity = 21/39 (53.85%), Postives = 28/39 (71.79%), Query Frame = 1 
Query:   40 IPHLLGIFCGHVYHFFTVVHPLMGAKKRLGAPNWMKRRI 156
            +P LLGI  GH+Y+FFTV+HPL G K  L  PNW+ + +
Sbjct:  169 MPDLLGIIAGHLYYFFTVLHPLAGGKNILKTPNWVHKIV 207
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BLAST of mRNA_C-tenellus_contig7616.2.1 vs. uniprot
Match: A0A1U7ZA44_NELNU (Derlin n=1 Tax=Nelumbo nucifera TaxID=4432 RepID=A0A1U7ZA44_NELNU)

HSP 1 Score: 53.5 bits (127), Expect = 8.050e-7
Identity = 25/54 (46.30%), Postives = 32/54 (59.26%), Query Frame = 1 
Query:   40 IPHLLGIFCGHVYHFFTVVHPLMGAKKRLGAPNWMKR---RIDGGDNPNFMEAP 192
            +P LLGI  GH+Y+FFTV+HPL G K  L  P W+ +   R + G N N    P
Sbjct:  170 MPDLLGILAGHIYYFFTVLHPLAGGKNILKTPVWVNKLVARWNVGPNANSSSQP 223
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BLAST of mRNA_C-tenellus_contig7616.2.1 vs. uniprot
Match: C6TL00_SOYBN (Derlin n=1 Tax=Glycine max TaxID=3847 RepID=C6TL00_SOYBN)

HSP 1 Score: 52.8 bits (125), Expect = 8.150e-7
Identity = 22/39 (56.41%), Postives = 27/39 (69.23%), Query Frame = 1 
Query:   40 IPHLLGIFCGHVYHFFTVVHPLMGAKKRLGAPNWMKRRI 156
            IP LLGI  GH+Y+FFTV+HPL G K  L  P W+ + I
Sbjct:   96 IPDLLGIIAGHLYYFFTVLHPLAGGKNILKTPMWVHKLI 134
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BLAST of mRNA_C-tenellus_contig7616.2.1 vs. uniprot
Match: A0A822ZMG4_NELNU (Uncharacterized protein n=1 Tax=Nelumbo nucifera TaxID=4432 RepID=A0A822ZMG4_NELNU)

HSP 1 Score: 50.4 bits (119), Expect = 1.250e-6
Identity = 20/35 (57.14%), Postives = 25/35 (71.43%), Query Frame = 1 
Query:   40 IPHLLGIFCGHVYHFFTVVHPLMGAKKRLGAPNWM 144
            +P LLGI  GH+Y+FFTV+HPL G K  L  P W+
Sbjct:   13 MPDLLGILAGHIYYFFTVLHPLAGGKNILKTPVWV 47
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BLAST of mRNA_C-tenellus_contig7616.2.1 vs. uniprot
Match: I1KPV6_SOYBN (Derlin n=13 Tax=indigoferoid/millettioid clade TaxID=2233855 RepID=I1KPV6_SOYBN)

HSP 1 Score: 52.8 bits (125), Expect = 1.590e-6
Identity = 22/39 (56.41%), Postives = 27/39 (69.23%), Query Frame = 1 
Query:   40 IPHLLGIFCGHVYHFFTVVHPLMGAKKRLGAPNWMKRRI 156
            IP LLGI  GH+Y+FFTV+HPL G K  L  P W+ + I
Sbjct:  170 IPDLLGIIAGHLYYFFTVLHPLAGGKNILKTPMWVHKLI 208
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BLAST of mRNA_C-tenellus_contig7616.2.1 vs. uniprot
Match: A0A2U1MUG0_ARTAN (Derlin n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1MUG0_ARTAN)

HSP 1 Score: 50.1 bits (118), Expect = 3.830e-6
Identity = 19/38 (50.00%), Postives = 26/38 (68.42%), Query Frame = 1 
Query:   43 PHLLGIFCGHVYHFFTVVHPLMGAKKRLGAPNWMKRRI 156
            P L GI  GH+Y+FFTV+HPL G K  L  P W+++ +
Sbjct:   51 PDLCGILAGHLYYFFTVLHPLAGGKVMLQTPMWLRKVV 88
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BLAST of mRNA_C-tenellus_contig7616.2.1 vs. uniprot
Match: F2DDM5_HORVV (Derlin n=3 Tax=Pooideae TaxID=147368 RepID=F2DDM5_HORVV)

HSP 1 Score: 48.5 bits (114), Expect = 5.410e-5
Identity = 19/39 (48.72%), Postives = 26/39 (66.67%), Query Frame = 1 
Query:   40 IPHLLGIFCGHVYHFFTVVHPLMGAKKRLGAPNWMKRRI 156
            +P LLGI  GH+Y+FFTV+HPL   K  L  P W+ + +
Sbjct:  170 LPGLLGILVGHLYYFFTVLHPLASGKNYLKTPMWVHKIV 208
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7616.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
D7FKU9_ECTSI3.750e-3282.81Derlin n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKU9_... [more]
A0A6U1QM22_9STRA1.310e-850.98Derlin n=1 Tax=Fibrocapsa japonica TaxID=94617 Rep... [more]
A0A7S2G1G6_9STRA2.080e-754.17Derlin n=1 Tax=Florenciella parvula TaxID=236787 R... [more]
A0A200QPV6_9MAGN5.850e-753.85Derlin n=1 Tax=Macleaya cordata TaxID=56857 RepID=... [more]
A0A1U7ZA44_NELNU8.050e-746.30Derlin n=1 Tax=Nelumbo nucifera TaxID=4432 RepID=A... [more]
C6TL00_SOYBN8.150e-756.41Derlin n=1 Tax=Glycine max TaxID=3847 RepID=C6TL00... [more]
A0A822ZMG4_NELNU1.250e-657.14Uncharacterized protein n=1 Tax=Nelumbo nucifera T... [more]
I1KPV6_SOYBN1.590e-656.41Derlin n=13 Tax=indigoferoid/millettioid clade Tax... [more]
A0A2U1MUG0_ARTAN3.830e-650.00Derlin n=1 Tax=Artemisia annua TaxID=35608 RepID=A... [more]
F2DDM5_HORVV5.410e-548.72Derlin n=3 Tax=Pooideae TaxID=147368 RepID=F2DDM5_... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7616contigC-tenellus_contig7616:6343..6534 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FKU9
PFAMsDER1
Model size192
Max annot lvl2759|Eukaryota
KEGG koko:K11519
KEGG Pathwayko04141,ko05014,map04141,map05014
KEGG ModuleM00403
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.14e-33
EggNOG OGsCOG5291@1|root,KOG0858@2759|Eukaryota
Descriptionubiquitin-dependent ERAD pathway
Cds size192
COG categoryI
BRITEko00000,ko00001,ko00002
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790047.5415325-CDS-C-tenellus_contig7616:6342..65341680790047.5415325-CDS-C-tenellus_contig7616:6342..6534Choristocarpus tenellus KU2346CDSC-tenellus_contig7616 6343..6534 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7616.2.1prot_C-tenellus_contig7616.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7616 6343..6534 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7616.2.1

>prot_C-tenellus_contig7616.2.1 ID=prot_C-tenellus_contig7616.2.1|Name=mRNA_C-tenellus_contig7616.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=64bp
AAVLQEQGQPAAAIPHLLGIFCGHVYHFFTVVHPLMGAKKRLGAPNWMKR
RIDGGDNPNFMEAP
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mRNA from alignment at C-tenellus_contig7616:6343..6534-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7616.2.1 ID=mRNA_C-tenellus_contig7616.2.1|Name=mRNA_C-tenellus_contig7616.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=192bp|location=Sequence derived from alignment at C-tenellus_contig7616:6343..6534- (Choristocarpus tenellus KU2346)
GCCGCTGTTCTTCAGGAGCAGGGTCAGCCGGCGGCAGCCATCCCGCACCT
GCTGGGTATTTTCTGTGGACATGTCTACCACTTCTTCACCGTGGTGCATC
CCCTCATGGGAGCGAAGAAGCGGTTGGGAGCGCCTAACTGGATGAAACGA
CGCATTGATGGGGGAGACAACCCAAATTTCATGGAGGCTCCG
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Coding sequence (CDS) from alignment at C-tenellus_contig7616:6343..6534-

>mRNA_C-tenellus_contig7616.2.1 ID=mRNA_C-tenellus_contig7616.2.1|Name=mRNA_C-tenellus_contig7616.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=192bp|location=Sequence derived from alignment at C-tenellus_contig7616:6343..6534- (Choristocarpus tenellus KU2346)
GCCGCTGTTCTTCAGGAGCAGGGTCAGCCGGCGGCAGCCATCCCGCACCT
GCTGGGTATTTTCTGTGGACATGTCTACCACTTCTTCACCGTGGTGCATC
CCCTCATGGGAGCGAAGAAGCGGTTGGGAGCGCCTAACTGGATGAAACGA
CGCATTGATGGGGGAGACAACCCAAATTTCATGGAGGCTCCG
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