mRNA_C-tenellus_contig7615.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7615.1.1
Unique NamemRNA_C-tenellus_contig7615.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig7615.1.1 vs. uniprot
Match: A0A7S2V2B3_9STRA (Ubiquitinyl hydrolase 1 (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V2B3_9STRA)

HSP 1 Score: 112 bits (279), Expect = 1.470e-28
Identity = 52/79 (65.82%), Postives = 64/79 (81.01%), Query Frame = 1
Query:    4 DLPTVVIQAVDAIIAHQGAAEQAEVNQWVADDDISVSKYAADLPQLPEASGKRVSNDPSTWQCEESGMRENLWLNLSTG 240
            DLP +V+QAV+AIIAHQGAA   +V+QW  D+D+ VSKYA +L QL    GK++S DP+TW CEESGM+ENLWLNLSTG
Sbjct:   36 DLPELVLQAVEAIIAHQGAATMDQVDQWTMDEDVPVSKYAENLVQLDN--GKKISPDPATWACEESGMKENLWLNLSTG 112          
BLAST of mRNA_C-tenellus_contig7615.1.1 vs. uniprot
Match: A0A836CMU5_9STRA (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMU5_9STRA)

HSP 1 Score: 106 bits (265), Expect = 5.010e-25
Identity = 50/78 (64.10%), Postives = 62/78 (79.49%), Query Frame = 1
Query:    7 LPTVVIQAVDAIIAHQGAAEQAEVNQWVADDDISVSKYAADLPQLPEASGKRVSNDPSTWQCEESGMRENLWLNLSTG 240
            LPT+V QA DA+I HQGAAEQAEV  W A+ ++ VSKYA +LP   E +G R+SNDPS+W+C +SG+ ENLWLNLSTG
Sbjct:  161 LPTLVCQAADAVITHQGAAEQAEVASWEAEQELPVSKYAENLPV--EDNGVRISNDPSSWKCADSGVTENLWLNLSTG 236          
BLAST of mRNA_C-tenellus_contig7615.1.1 vs. uniprot
Match: A0A7S1SZS2_9CHLO (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1SZS2_9CHLO)

HSP 1 Score: 96.7 bits (239), Expect = 1.630e-21
Identity = 45/79 (56.96%), Postives = 62/79 (78.48%), Query Frame = 1
Query:    4 DLPTVVIQAVDAIIAHQGAAEQAEVNQWVADDDISVSKYAADLPQLPEASGKRVSNDPSTWQCEESGMRENLWLNLSTG 240
            DLP VV+QA++A++AH+ A +Q EV+ W  +++ +VSKYA  L QLP A+GK + +DPS W+C+ESG  ENLWLNLSTG
Sbjct:  134 DLPEVVLQAINAVVAHEAAGKQEEVSVW--EEERAVSKYAESLEQLP-ANGKVIPSDPSQWKCDESGATENLWLNLSTG 209          
BLAST of mRNA_C-tenellus_contig7615.1.1 vs. uniprot
Match: A0A7S0N978_9CHLO (Ubiquitinyl hydrolase 1 (Fragment) n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0N978_9CHLO)

HSP 1 Score: 93.6 bits (231), Expect = 1.710e-20
Identity = 47/79 (59.49%), Postives = 56/79 (70.89%), Query Frame = 1
Query:    4 DLPTVVIQAVDAIIAHQGAAEQAEVNQWVADDDISVSKYAADLPQLPEASGKRVSNDPSTWQCEESGMRENLWLNLSTG 240
            DLP +VIQAVDA+I H G   Q EV  W  +  ++VSKYA DL QL    GK++  +PS W CEESGM+ENLWLNLSTG
Sbjct:  133 DLPELVIQAVDAVIKHAGTMAQEEVAAWQ-EGPLTVSKYAKDLVQLDN--GKKIPPNPSDWACEESGMKENLWLNLSTG 208          
BLAST of mRNA_C-tenellus_contig7615.1.1 vs. uniprot
Match: A0A7R9Y9N6_9STRA (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9Y9N6_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 3.660e-20
Identity = 41/80 (51.25%), Postives = 58/80 (72.50%), Query Frame = 1
Query:    1 QDLPTVVIQAVDAIIAHQGAAEQAEVNQWVADDDISVSKYAADLPQLPEASGKRVSNDPSTWQCEESGMRENLWLNLSTG 240
            Q++P +V+     +I HQG ++Q ++ QWV D+++  SKYA  L QL    G ++S+DPSTW+CE+SGM ENLWLNLSTG
Sbjct:  143 QEIPEMVVVVARQVIEHQGYSDQQDLAQWVDDEELKESKYAEALEQLDN--GVKISSDPSTWKCEDSGMTENLWLNLSTG 220          
BLAST of mRNA_C-tenellus_contig7615.1.1 vs. uniprot
Match: A0A061QQZ9_9CHLO (Ubiquitin carboxyl-terminal hydrolase n=4 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061QQZ9_9CHLO)

HSP 1 Score: 90.1 bits (222), Expect = 3.240e-19
Identity = 42/79 (53.16%), Postives = 57/79 (72.15%), Query Frame = 1
Query:    4 DLPTVVIQAVDAIIAHQGAAEQAEVNQWVADDDISVSKYAADLPQLPEASGKRVSNDPSTWQCEESGMRENLWLNLSTG 240
            +LP VV+Q++ A+IAH  A +Q E   W  ++D  VSKYA DL QLP   GK + +DP+ W+C+E+G+ ENLWLNLSTG
Sbjct:  134 ELPEVVLQSISAVIAHDAAGKQEETAVW--EEDRPVSKYAKDLEQLPTG-GKVIPSDPAQWKCDETGVTENLWLNLSTG 209          
BLAST of mRNA_C-tenellus_contig7615.1.1 vs. uniprot
Match: A0A7S3F788_9VIRI (Hypothetical protein (Fragment) n=1 Tax=Prasinoderma singulare TaxID=676789 RepID=A0A7S3F788_9VIRI)

HSP 1 Score: 87.8 bits (216), Expect = 1.060e-18
Identity = 44/79 (55.70%), Postives = 56/79 (70.89%), Query Frame = 1
Query:    4 DLPTVVIQAVDAIIAHQGAAEQAEVNQWVADDDISVSKYAADLPQLPEASGKRVSNDPSTWQCEESGMRENLWLNLSTG 240
            +LP  VIQA + ++A  GA  +A V+ +VAD+   VSKYA  L QL    G ++S DPSTW+C ESGM+ENLWLNLSTG
Sbjct:  158 ELPEKVIQACNGVLAASGAEREAAVDAFVADEVRKVSKYADGLEQLDN--GIKISPDPSTWECAESGMKENLWLNLSTG 234          
BLAST of mRNA_C-tenellus_contig7615.1.1 vs. uniprot
Match: A0A7S1RW26_ALECA (Ubiquitinyl hydrolase 1 n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1RW26_ALECA)

HSP 1 Score: 88.2 bits (217), Expect = 1.450e-18
Identity = 41/79 (51.90%), Postives = 53/79 (67.09%), Query Frame = 1
Query:    4 DLPTVVIQAVDAIIAHQGAAEQAEVNQWVADDDISVSKYAADLPQLPEASGKRVSNDPSTWQCEESGMRENLWLNLSTG 240
            DLP +V QAVDA+IAHQGA       QW A+ ++S SKY  ++ QLP    K++S  P  W+CE+SG  +NLWLNLS G
Sbjct:   23 DLPMIVTQAVDAVIAHQGAKSMDSSKQWEAEQELSESKYYKEIVQLPAT--KKISPHPKDWKCEKSGDTQNLWLNLSDG 99          
BLAST of mRNA_C-tenellus_contig7615.1.1 vs. uniprot
Match: A0A7S2C5P8_9STRA (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2C5P8_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 2.100e-18
Identity = 45/79 (56.96%), Postives = 54/79 (68.35%), Query Frame = 1
Query:    4 DLPTVVIQAVDAIIAHQGAAEQAEVNQWVADDDISVSKYAADLPQLPEASGKRVSNDPSTWQCEESGMRENLWLNLSTG 240
            D P +V QA +A+ AHQ A +  EVN  V D++  VSKYAA+L QL    G +V  D S W+CEESGM ENLWLNLSTG
Sbjct:  126 DTPMMVAQAAEAVAAHQSAGDVNEVNAIVEDEERPVSKYAANLVQLDN--GVKVPADSSLWKCEESGMTENLWLNLSTG 202          
BLAST of mRNA_C-tenellus_contig7615.1.1 vs. uniprot
Match: A0A2V3IW46_9FLOR (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IW46_9FLOR)

HSP 1 Score: 87.4 bits (215), Expect = 2.870e-18
Identity = 40/80 (50.00%), Postives = 53/80 (66.25%), Query Frame = 1
Query:    1 QDLPTVVIQAVDAIIAHQGAAEQAEVNQWVADDDISVSKYAADLPQLPEASGKRVSNDPSTWQCEESGMRENLWLNLSTG 240
            + LP+++  A+DA++ H G    A+V     ++D   SKYA DLPQ+    G ++S DP  WQCEESGM ENLWLNLSTG
Sbjct:  130 EQLPSIITMAIDAVLKHDGVERAAQVAAAWEEEDRKESKYARDLPQIDN--GIKISPDPRQWQCEESGMTENLWLNLSTG 207          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7615.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2V2B3_9STRA1.470e-2865.82Ubiquitinyl hydrolase 1 (Fragment) n=1 Tax=Fibroca... [more]
A0A836CMU5_9STRA5.010e-2564.10Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Trib... [more]
A0A7S1SZS2_9CHLO1.630e-2156.96Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Tetr... [more]
A0A7S0N978_9CHLO1.710e-2059.49Ubiquitinyl hydrolase 1 (Fragment) n=1 Tax=Pyramim... [more]
A0A7R9Y9N6_9STRA3.660e-2051.25Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Ping... [more]
A0A061QQZ9_9CHLO3.240e-1953.16Ubiquitin carboxyl-terminal hydrolase n=4 Tax=Tetr... [more]
A0A7S3F788_9VIRI1.060e-1855.70Hypothetical protein (Fragment) n=1 Tax=Prasinoder... [more]
A0A7S1RW26_ALECA1.450e-1851.90Ubiquitinyl hydrolase 1 n=1 Tax=Alexandrium catene... [more]
A0A7S2C5P8_9STRA2.100e-1856.96Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Dict... [more]
A0A2V3IW46_9FLOR2.870e-1850.00Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Grac... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7615contigC-tenellus_contig7615:5329..6436 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog248742.XP_005642790.1
PFAMsUBA,UCH,zf-UBP
Model size249
Max annot lvl3041|Chlorophyta
KEGG koko:K11836
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.45e-17
EggNOG OGsCOG5207@1|root,KOG0944@2759|Eukaryota,37SPQ@33090|Viridiplantae,34H2V@3041|Chlorophyta
EC3.4.19.12
DescriptionUbiquitinyl hydrolase 1
Cds size249
COG categoryO
BRITEko00000,ko01000,ko01002,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790047.4953678-CDS-C-tenellus_contig7615:5328..54031680790047.4953678-CDS-C-tenellus_contig7615:5328..5403Choristocarpus tenellus KU2346CDSC-tenellus_contig7615 5329..5403 +
1680790047.5103073-CDS-C-tenellus_contig7615:6262..64361680790047.5103073-CDS-C-tenellus_contig7615:6262..6436Choristocarpus tenellus KU2346CDSC-tenellus_contig7615 6263..6436 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7615.1.1prot_C-tenellus_contig7615.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7615 5329..6436 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7615.1.1

>prot_C-tenellus_contig7615.1.1 ID=prot_C-tenellus_contig7615.1.1|Name=mRNA_C-tenellus_contig7615.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=83bp
QDLPTVVIQAVDAIIAHQGAAEQAEVNQWVADDDISVSKYAADLPQLPEA
SGKRVSNDPSTWQCEESGMRENLWLNLSTGVC*
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mRNA from alignment at C-tenellus_contig7615:5329..6436+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7615.1.1 ID=mRNA_C-tenellus_contig7615.1.1|Name=mRNA_C-tenellus_contig7615.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1108bp|location=Sequence derived from alignment at C-tenellus_contig7615:5329..6436+ (Choristocarpus tenellus KU2346)
CAGGATCTCCCGACGGTGGTCATCCAGGCCGTGGATGCCATCATTGCTCA CCAGGGGGCTGCTGAGCAAGCTGAGGTGGCATTGGACAGGGGCAGGGACA GGGGCTGGGGCTAGAGTTTGACTGTCAGGGACATAGAATGCAATTTCCAA TATTCTTTCATTGCCAAGCAACATCTAATTGTTTGTATTGAAGTGTATGT CTGTATCATAGTACTTCAGTCCAGTCCGTTGTTTATAGTGCTTGGTAGTG AAGTCATAGTACTTGAACTTGTTATATAACTTGACAGTATGGTTATGGTA CTTATTTATATTTTTGTGGTCCCTGGTACTGTAGTGATAGTACTTGGTCT TGTTATATAACTTGGCAGTGCAGTTGTGGTACTCACTATTGTTATGGTAC CTGGTACTGTGGTGATAGTGCTTGACGTTACTGTTACATAACTTGGGAGT GCGGTTGTGGTACTTCAAAATATTATTGTGATACTTGGTGTGGTGATAAT ACTGGATAATGTTGTTACATGGCTTGGCAGTGTGGTTGTAGTACTTATCT TACTTTTGGCAATTGGTAGTACAGAGATGGGGCTTGATATTGTTGTTGTA TACATTGGCATTGCTGTTGTGGTACTTTTTGTTATGATACTTGGTTCTGC AAAGATTGTACATGATATTTCTGTTACATTACTTGGCAGTGTGGTTGTAG TACTTTCTGTGGTTATGATACTTGGTATTGTTGTTATACTACTTGATATT CATGTTATTAAATATAAAAATTGGGGGTTGCAGTGCTCGACAAGGATGGT TAGAGCATACCTGTACAAAAAGGCTCATTTTTTTCTTCAAGGCACGAAGT ATTGCATGGTTTAGCTGAGAGTACAAGTGCAAGCATACTGCTGTTGTGCT AAACTCCCCCCCCCCACCATTCTTCCTTTGTAAGGTGAACCAGTGGGTTG CGGATGATGATATCTCTGTAAGCAAGTATGCAGCTGACCTGCCACAGCTG CCTGAGGCCAGTGGAAAGAGGGTGTCCAACGACCCTTCCACTTGGCAGTG CGAGGAGAGCGGGATGCGGGAAAACCTTTGGCTCAATCTTTCCACTGGTG TGTGTTGA
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Coding sequence (CDS) from alignment at C-tenellus_contig7615:5329..6436+

>mRNA_C-tenellus_contig7615.1.1 ID=mRNA_C-tenellus_contig7615.1.1|Name=mRNA_C-tenellus_contig7615.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=249bp|location=Sequence derived from alignment at C-tenellus_contig7615:5329..6436+ (Choristocarpus tenellus KU2346)
CAGGATCTCCCGACGGTGGTCATCCAGGCCGTGGATGCCATCATTGCTCA
CCAGGGGGCTGCTGAGCAAGCTGAGGTGAACCAGTGGGTTGCGGATGATG
ATATCTCTGTAAGCAAGTATGCAGCTGACCTGCCACAGCTGCCTGAGGCC
AGTGGAAAGAGGGTGTCCAACGACCCTTCCACTTGGCAGTGCGAGGAGAG
CGGGATGCGGGAAAACCTTTGGCTCAATCTTTCCACTGGTGTGTGTTGA
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