mRNA_C-tenellus_contig7602.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7602.1.1
Unique NamemRNA_C-tenellus_contig7602.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7602.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7602contigC-tenellus_contig7602:3882..4611 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size378
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-08_001430.1
Cds size210
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790047.0760198-UTR-C-tenellus_contig7602:3881..40481680790047.0760198-UTR-C-tenellus_contig7602:3881..4048Choristocarpus tenellus KU2346UTRC-tenellus_contig7602 3882..4048 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790047.087224-CDS-C-tenellus_contig7602:4048..41951680790047.087224-CDS-C-tenellus_contig7602:4048..4195Choristocarpus tenellus KU2346CDSC-tenellus_contig7602 4049..4195 +
1680790047.0991354-CDS-C-tenellus_contig7602:4548..46111680790047.0991354-CDS-C-tenellus_contig7602:4548..4611Choristocarpus tenellus KU2346CDSC-tenellus_contig7602 4549..4611 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7602.1.1prot_C-tenellus_contig7602.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7602 4049..4611 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7602.1.1

>prot_C-tenellus_contig7602.1.1 ID=prot_C-tenellus_contig7602.1.1|Name=mRNA_C-tenellus_contig7602.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=70bp
MLEGVRNASGQRQRSKATAAIKDMSSEPGLRWGIRLIESLQGIISEESKV
YSKCFHEVIRQERVVCKERG
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mRNA from alignment at C-tenellus_contig7602:3882..4611+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7602.1.1 ID=mRNA_C-tenellus_contig7602.1.1|Name=mRNA_C-tenellus_contig7602.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=730bp|location=Sequence derived from alignment at C-tenellus_contig7602:3882..4611+ (Choristocarpus tenellus KU2346)
AGGTACTCTATCCGCTACAGAAATTCAAGTAAACCGGGGTGTTCTCATTC
TCGAACAAACATCCCCCCATTCTGTCCATAATATTAAGGTACAAAGTGAC
TTTGTTCCCAGCCAAATCACCGCGCGGGCGAGAACAAGTGTCCCACCTTT
CAAAGGCCCTAACAACCATGCTGGAGGGAGTGCGTAATGCCAGTGGTCAA
AGGCAAAGATCAAAGGCAACGGCGGCTATAAAGGACATGAGTTCTGAGCC
TGGTCTACGATGGGGCATTAGACTAATAGAGTCATTGCAAGGCATTATAT
CGGAGGAGAGCAAGGTAGGCGGCCCTACCCCACTTAGAGATTTGGTCAAA
TTAATGTATATGTGTATTGATTATATACTTGCTGTGCAGTAAAGTAAAGC
AACTGCCATAGTTTCATAAAGTACTGAAAACTTCAAAGTACTCAGACTTG
CGCTGCGCTGAGAGTGGTTGTCAGTCCATGTTGCAACATCACTTGACTCT
CTCCCCGAGAGTATTTCCAGGTATTGTTTCAAAGTACTGTACTCGAGACT
ACTGTCACTACTACAGTGGATCTCTATTAAGCAAACTTGAAGACAAGTGC
AGAGAAGATGCTATAGTGATATGAGTTGTCAATACCTTTTCATCCAAAAA
TCGATTTGTCAATTCAGGTGTACAGTAAGTGCTTTCATGAGGTTATTCGC
CAGGAGCGTGTTGTGTGCAAAGAGAGGGGA
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Coding sequence (CDS) from alignment at C-tenellus_contig7602:3882..4611+

>mRNA_C-tenellus_contig7602.1.1 ID=mRNA_C-tenellus_contig7602.1.1|Name=mRNA_C-tenellus_contig7602.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=210bp|location=Sequence derived from alignment at C-tenellus_contig7602:3882..4611+ (Choristocarpus tenellus KU2346)
ATGCTGGAGGGAGTGCGTAATGCCAGTGGTCAAAGGCAAAGATCAAAGGC
AACGGCGGCTATAAAGGACATGAGTTCTGAGCCTGGTCTACGATGGGGCA
TTAGACTAATAGAGTCATTGCAAGGCATTATATCGGAGGAGAGCAAGGTG
TACAGTAAGTGCTTTCATGAGGTTATTCGCCAGGAGCGTGTTGTGTGCAA
AGAGAGGGGA
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