mRNA_C-tenellus_contig7601.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7601.1.1
Unique NamemRNA_C-tenellus_contig7601.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7601.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7601contigC-tenellus_contig7601:1175..2854 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1141
Hectar predicted targeting categorymitochondrion
Exons2
Cds size657
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790047.004726-UTR-C-tenellus_contig7601:1174..14761680790047.004726-UTR-C-tenellus_contig7601:1174..1476Choristocarpus tenellus KU2346UTRC-tenellus_contig7601 1175..1476 -
1680790047.0380602-UTR-C-tenellus_contig7601:2672..28541680790047.0380602-UTR-C-tenellus_contig7601:2672..2854Choristocarpus tenellus KU2346UTRC-tenellus_contig7601 2673..2854 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790047.0156288-CDS-C-tenellus_contig7601:1476..19321680790047.0156288-CDS-C-tenellus_contig7601:1476..1932Choristocarpus tenellus KU2346CDSC-tenellus_contig7601 1477..1932 -
1680790047.0262547-CDS-C-tenellus_contig7601:2471..26721680790047.0262547-CDS-C-tenellus_contig7601:2471..2672Choristocarpus tenellus KU2346CDSC-tenellus_contig7601 2472..2672 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7601.1.1prot_C-tenellus_contig7601.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7601 1477..2672 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7601.1.1

>prot_C-tenellus_contig7601.1.1 ID=prot_C-tenellus_contig7601.1.1|Name=mRNA_C-tenellus_contig7601.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=219bp
MHRAPQILCQLRGRASSYVLGAASSCQAAPSSSRKLGVTACRDCGCVVGG
GLDAGGKRWASTEAEVEFPIEDERHPESIHHTNEPGTLEPSPPPPSSSST
GRRRSRQPFHADAFTPVEVDTLDSDWVPKTTAEAIEWNNDAIQRARLATS
RNNRTRRGRESGRVERSYNFDRSGSKDLTEDLSSRVAQAFRMGSQSSMIA
VWEVSIFVSVLGILEGVS*
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mRNA from alignment at C-tenellus_contig7601:1175..2854-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7601.1.1 ID=mRNA_C-tenellus_contig7601.1.1|Name=mRNA_C-tenellus_contig7601.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1680bp|location=Sequence derived from alignment at C-tenellus_contig7601:1175..2854- (Choristocarpus tenellus KU2346)
CACTATACTATGTGTCTCTACATTCCCTCTCATGAAGGATTTAAACAGTT
GTCTTTACAAGATTGTGGATGGTGGGTTTTGTAGAGATATTTTCTATGGG
AAGAGGAAAATTGAGGAAGTACTACGTTACCGTGGTTGATTGTCACGATA
GGGAACACAGTGGTTAATAAGCGTCTTGTTCCATGCATCGAGCACCGCAA
ATCCTATGTCAATTGAGGGGTAGGGCAAGTTCTTATGTCCTTGGGGCTGC
GAGCTCTTGCCAAGCTGCGCCATCGTCTAGCAGAAAACTAGGAGTGACGG
CGTGTAGGGACTGCGGGTGTGTGGTTGGAGGAGGATTGGATGCTGGGGGA
AAGAGGTGGGCGTCCACGGAGGCAGAAGTGGAGGTGGGTTCTCCTCGATA
GGCTCAAGTGTGATTTGATTATGATTCAACAGAGTTCTTGGCGATTGACT
TGGAAGTGATGAGCATCGTGGTCATCAAGCATAGGTGGTGTTGATGAGTG
TAGGTTCTTTTCATTTATTGTCGATCAATTGTTTGTACGAGCATGTGCTT
CCTCCCTTGGCCGTGAAATCATTAATAGGTGCAAAAACGTATTATTGATC
CTAACCTCACTGGAATGGCTTCCACCTTTGGTACCCCAAACTGGGATTCT
CAATGAAGTGTTGCATTTGATTGATCCATGAGTCCGTGAACTCCCCAACC
GAACCCATCCCCGCGGTAGTTGACTTGTACAAGCGTGACTGTGCCTAGTT
TGACATTAACTGACTGGACTAGTGTGATTATACTTAGCTTTTTTAAGAGG
ACCAGTGCCTTCCCTTTCCGCTCGAGGTACCCTCAGCTCTGTGGAGTACA
CCATTATTTCTGATCCCGTAGATACACATGAAAGGTTTCCCCCCACATGT
TGCCCATTCCGTCCTTGAACAGTTCCCAATAGAGGATGAGAGGCATCCAG
AGTCGATACATCACACTAATGAACCAGGAACCCTCGAGCCTTCGCCGCCG
CCACCTTCATCAAGTTCGACAGGTCGCCGTCGCTCGCGACAACCTTTCCA
CGCCGATGCTTTCACTCCAGTCGAAGTCGACACCTTAGATAGCGATTGGG
TGCCGAAGACCACGGCAGAGGCGATAGAGTGGAACAATGATGCCATTCAG
CGGGCAAGATTGGCCACCTCCAGGAACAACAGGACGCGAAGGGGTAGAGA
ATCGGGTAGGGTCGAGAGGTCGTACAATTTTGATCGCTCAGGTTCCAAGG
ATCTGACCGAAGACCTCAGCAGTAGGGTTGCGCAGGCCTTCAGGATGGGT
AGTCAGAGCAGCATGATCGCCGTATGGGAGGTGAGCATTTTTGTGTCTGT
TCTTGGTATCCTTGAGGGAGTCTCGTAGGGTGCGGGGTTGACCTTTCCAC
CTCCGTAGAACTGATTCCTCAGTGCTTACTCAGTGGCAAATACCCAAAAG
GTGAGAGATCTTCTGGGTGAAGAGGCCATTGCATGACATGAGTTTGGGCA
TACTTGAGTGAATAGAATGATAGTTGTCACTACTGTACCCCTTCTGTTGC
TACATCTCATCAGAAAAAAACACCCACATTATTTATGTGAACCATGGCAT
ATCGATATTGTACTTTAAGGTCTCAAGAGCATGGGGTCGCCCCTTACACA
TACATTTGTCTCTGTCAAATCTGGTTTTTC
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Coding sequence (CDS) from alignment at C-tenellus_contig7601:1175..2854-

>mRNA_C-tenellus_contig7601.1.1 ID=mRNA_C-tenellus_contig7601.1.1|Name=mRNA_C-tenellus_contig7601.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=657bp|location=Sequence derived from alignment at C-tenellus_contig7601:1175..2854- (Choristocarpus tenellus KU2346)
ATGCATCGAGCACCGCAAATCCTATGTCAATTGAGGGGTAGGGCAAGTTC
TTATGTCCTTGGGGCTGCGAGCTCTTGCCAAGCTGCGCCATCGTCTAGCA
GAAAACTAGGAGTGACGGCGTGTAGGGACTGCGGGTGTGTGGTTGGAGGA
GGATTGGATGCTGGGGGAAAGAGGTGGGCGTCCACGGAGGCAGAAGTGGA
GTTCCCAATAGAGGATGAGAGGCATCCAGAGTCGATACATCACACTAATG
AACCAGGAACCCTCGAGCCTTCGCCGCCGCCACCTTCATCAAGTTCGACA
GGTCGCCGTCGCTCGCGACAACCTTTCCACGCCGATGCTTTCACTCCAGT
CGAAGTCGACACCTTAGATAGCGATTGGGTGCCGAAGACCACGGCAGAGG
CGATAGAGTGGAACAATGATGCCATTCAGCGGGCAAGATTGGCCACCTCC
AGGAACAACAGGACGCGAAGGGGTAGAGAATCGGGTAGGGTCGAGAGGTC
GTACAATTTTGATCGCTCAGGTTCCAAGGATCTGACCGAAGACCTCAGCA
GTAGGGTTGCGCAGGCCTTCAGGATGGGTAGTCAGAGCAGCATGATCGCC
GTATGGGAGGTGAGCATTTTTGTGTCTGTTCTTGGTATCCTTGAGGGAGT
CTCGTAG
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