mRNA_C-tenellus_contig760.2.1 (mRNA) Choristocarpus tenellus KU2346
Overview
Homology
BLAST of mRNA_C-tenellus_contig760.2.1 vs. uniprot
Match: A0A6H5JFY4_9PHAE (zf-C2HC5 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFY4_9PHAE) HSP 1 Score: 181 bits (458), Expect = 4.780e-47 Identity = 118/272 (43.38%), Postives = 156/272 (57.35%), Query Frame = 3 Query: 552 PPQKWSGVTCTCMAIRHSLITNCTTCGKIACEAEGGYECSFCRSPLPVTGREPTATNS-----YAGSANDQPQSAALAKAVARKEKLLLFDRTSVARTRVLDDQGDHFSTYNWLSREERERAEANEVARKEEQLARR---RKVTVSFDIMGRKVVE------------------ADNEETPQSSGEAVT----------------------TLGEQRDAQLQGSGDNSPESRAGENKQSSLPDRPSLHNSGLQGRAKEVYDIMRANLDKRQR 1223 P +WSGVTC CM H ++TNCT CGKIAC EGG+ CSFC LP TGREP + S AG+A P SAAL +A+ RK++LLLFDRTS +RTRVLDDQGD+F+++NWLS+ ERE+ EA E AR+++ +RR R+V +S DIMGR+V+E AD + + ++ G ++ E+ D G+G+ R SL N+GL+GRAKEVYD+MRANLDK+ R Sbjct: 228 PVPEWSGVTCLCMGKTHDVVTNCTDCGKIACVKEGGFGCSFCGCRLPTTGREPRSATSGGVDGAAGAA--APHSAALKEALERKDRLLLFDRTSASRTRVLDDQGDYFTSHNWLSQREREKGEAEEKARRDDAASRRGARRQVKMSIDIMGRRVIETHPGEDGGLADGGGGEXXADEDASRKTQGVSLDFGSXXXXXXXXXXXXXXXXXXXXXAEEADTPGAGNGNQ----------------RLSLENTGLRGRAKEVYDVMRANLDKKSR 481
BLAST of mRNA_C-tenellus_contig760.2.1 vs. uniprot
Match: D7FU14_ECTSI (Similar to thyroid hormone receptor interactor 4 isoform 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU14_ECTSI) HSP 1 Score: 170 bits (431), Expect = 2.170e-45 Identity = 113/246 (45.93%), Postives = 150/246 (60.98%), Query Frame = 3 Query: 588 MAIRHSLITNCTTCGKIACEAEGGYECSFCRSPLPVTGREP--TATNSYAGSAN-DQPQSAALAKAVARKEKLLLFDRTSVARTRVLDDQGDHFSTYNWLSREERERAEANEVARKEEQLARR---RKVTVSFDIMGRKVVE-----------------ADNEETPQSSGEAVT----------TLGEQRDAQLQGS-GDNSPESRAGENKQSSLPDRPSLHNSGLQGRAKEVYDIMRANLDKRQR 1223 M H ++TNCT CGKIAC EGG+ CSFC LP TGREP A+ G+A PQSAAL +A+ RK++LLLFDRTS +RTRVLDDQGD+F+++NWLS+ ERE+ EA E R+++ +RR R+V +S DIMGR+V+E AD++ + ++ G ++ G GS G+ + S AG Q R SL N+GL+GRAKEVYD+MRANLDK+ R Sbjct: 1 MGKTHDVVTNCTDCGKIACVKEGGFGCSFCGCRLPTTGREPRSAASGGVDGAAGATAPQSAALKEALERKDRLLLFDRTSASRTRVLDDQGDYFTSHNWLSQREREKGEAEEKVRRDDAASRRGARRQVKMSIDIMGRRVIETQDPGEGRADGGGGEGEADDDASKKTQGVSLDFGSSSAAGGGAAGSSAXXXXXGSIGEEAGTSGAGNGNQ-----RLSLENTGLRGRAKEVYDVMRANLDKKSR 241
BLAST of mRNA_C-tenellus_contig760.2.1 vs. uniprot
Match: A0A2I0XBL4_9ASPA (zf-C2HC5 domain-containing protein n=2 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0XBL4_9ASPA) HSP 1 Score: 103 bits (257), Expect = 2.150e-20 Identity = 68/167 (40.72%), Postives = 98/167 (58.68%), Query Frame = 3 Query: 570 GVTCTCMAIRHSLITNCTTCGKIACEAEGGYECSFCRSPLPVTGREPTATNSYAGSANDQ-PQSAALAKAVARKEKLLLFDRTSVARTRVLDDQGDHFSTY--NWLSREERERAEANEVARKEEQLARRRKVTVSFDIMGRKVVEADNEETPQSSGEAVTTLGEQRD 1061 G C+C A RH L++NC +CGKI CE EG CSFC + + G ++YAG N P S + A A A ++L+ +DR S ART+V+DDQ D++ NWLS EE+E + + +E + ARR KV V+FD++GRKVV +E + S + E+R+ Sbjct: 163 GKPCSCQARRHQLVSNCLSCGKIVCEQEGEGPCSFCGALVLREG------STYAGLENFSIPTSDSEATAEAYAKRLVEYDRNSAARTKVIDDQSDYYEVEGNNWLSTEEKELLKKQQKEIEEAEEARRGKVIVTFDLVGRKVVLNKDEASEMESQYRILRPAEERE 323
BLAST of mRNA_C-tenellus_contig760.2.1 vs. uniprot
Match: A0A6A1UG91_9ROSI (Activating signal cointegrator 1 n=2 Tax=Morella rubra TaxID=262757 RepID=A0A6A1UG91_9ROSI) HSP 1 Score: 103 bits (257), Expect = 3.700e-20 Identity = 64/144 (44.44%), Postives = 89/144 (61.81%), Query Frame = 3 Query: 570 GVTCTCMAIRHSLITNCTTCGKIACEAEGGYECSFCRSPLPVTGREPTATNSYAG-SANDQPQSAALAKAVARKEKLLLFDRTSVARTRVLDDQGDHFSTY--NWLSREERERAEANEVARKEEQLARRRKVTVSFDIMGRKVV 992 G C+C A RH L++NC +CGKI CE EG CSFC + + G ++YAG PQS A A A A ++LL +DR S ART V+DDQ D++ +WLS+EE+E + +E +LA+R KV V+FD++GRKV+ Sbjct: 232 GKPCSCQARRHKLVSNCLSCGKIVCEQEGEGPCSFCGALVLREG------STYAGLDVILPPQSDAEAAAEAYAKRLLEYDRDSAARTTVIDDQSDYYEIEGNSWLSKEEKELLRKKQEEIEEAELAKRNKVVVTFDLLGRKVL 369
BLAST of mRNA_C-tenellus_contig760.2.1 vs. uniprot
Match: A0A2G5F3U0_AQUCA (zf-C2HC5 domain-containing protein n=1 Tax=Aquilegia coerulea TaxID=218851 RepID=A0A2G5F3U0_AQUCA) HSP 1 Score: 99.8 bits (247), Expect = 1.260e-19 Identity = 63/147 (42.86%), Postives = 88/147 (59.86%), Query Frame = 3 Query: 570 GVTCTCMAIRHSLITNCTTCGKIACEAEGGYECSFCRSPLPVTGREPTATNSYAGSANDQ-PQSAALAKAVARKEKLLLFDRTSVARTRVLDDQGDHFS--TYNWLSREERERAEANEVARKEEQLARRRKVTVSFDIMGRKVVEAD 1001 G C+C A RH L++NC +CGKI CE EG C+FC + + G ++YAG P S A A A A ++L+ +DR S ART V+DDQ D++ +WLS EE+E + + +E ARR KV V+FD++GRKVV +D Sbjct: 165 GQPCSCQARRHRLVSNCLSCGKIVCEQEGEGPCNFCGALVLKEG------STYAGLDETAIPLSVAEAAAEAFSKRLVEYDRNSAARTTVIDDQSDYYEIDANSWLSTEEKELLKKKQKETEEADQARRSKVIVTFDLVGRKVVFSD 305
BLAST of mRNA_C-tenellus_contig760.2.1 vs. uniprot
Match: UPI0009F2EBB9 (activating signal cointegrator 1 isoform X2 n=1 Tax=Dendrobium catenatum TaxID=906689 RepID=UPI0009F2EBB9) HSP 1 Score: 100 bits (248), Expect = 1.470e-19 Identity = 62/142 (43.66%), Postives = 87/142 (61.27%), Query Frame = 3 Query: 570 GVTCTCMAIRHSLITNCTTCGKIACEAEGGYECSFCRSPLPVTGREPTATNSYAGSANDQ-PQSAALAKAVARKEKLLLFDRTSVARTRVLDDQGDHFSTY--NWLSREERERAEANEVARKEEQLARRRKVTVSFDIMGRK 986 G C+C A RH L++NC +CGKI CE EG CSFC + + G ++YAG N P S + A A A ++L+ +DR S ART+V+DDQ D++ NWLS EE+E + + +E + ARR KV V+FD++GRK Sbjct: 163 GKPCSCQARRHQLVSNCLSCGKIVCEQEGEGPCSFCGALVLREG------STYAGLENFSIPTSDSEATAEAYAKRLVEYDRNSAARTKVIDDQSDYYEVEGNNWLSTEEKELLKKQQKEIEEAEEARRGKVIVTFDLVGRK 298
BLAST of mRNA_C-tenellus_contig760.2.1 vs. uniprot
Match: UPI0009E32E0D (activating signal cointegrator 1 n=1 Tax=Phalaenopsis equestris TaxID=78828 RepID=UPI0009E32E0D) HSP 1 Score: 100 bits (250), Expect = 1.800e-19 Identity = 62/144 (43.06%), Postives = 88/144 (61.11%), Query Frame = 3 Query: 570 GVTCTCMAIRHSLITNCTTCGKIACEAEGGYECSFCRSPLPVTGREPTATNSYAGSANDQ-PQSAALAKAVARKEKLLLFDRTSVARTRVLDDQGDHFSTY--NWLSREERERAEANEVARKEEQLARRRKVTVSFDIMGRKVV 992 G CTC A RH L++NC +CGKI CE EG CSFC + + G ++YAG N P S A A A ++L+ +DR S ART+V+DDQ D++ +WLS +E+E + + +E + ARR KV V+FD++GRKV+ Sbjct: 163 GKPCTCQARRHQLVSNCLSCGKIVCEQEGEGPCSFCGALVLREG------STYAGLENFSIPISETEATAEAYAKRLVEYDRNSAARTKVIDDQSDYYEIEGNSWLSAQEKELLKKKQKETEEAEEARRGKVIVTFDLVGRKVI 300
BLAST of mRNA_C-tenellus_contig760.2.1 vs. uniprot
Match: B9GZD7_POPTR (zf-C2HC5 domain-containing protein n=2 Tax=Populus trichocarpa TaxID=3694 RepID=B9GZD7_POPTR) HSP 1 Score: 95.1 bits (235), Expect = 2.180e-19 Identity = 59/143 (41.26%), Postives = 84/143 (58.74%), Query Frame = 3 Query: 570 GVTCTCMAIRHSLITNCTTCGKIACEAEGGYECSFCRSPLPVTGREPTATNSYAG-SANDQPQSAALAKAVARKEKLLLFDRTSVARTRVLDDQGDHFSTY--NWLSREERERAEANEVARKEEQLARRRKVTVSFDIMGRKV 989 G C C A +H L++NC +CGKI CE EG CSFC + + G ++Y G + P S A A A ++L+ +DR S ART V+DDQ D++ NWLS EE++ + +E +LA+R KV V+FD++GRKV Sbjct: 20 GKPCPCQARQHRLMSNCLSCGKIVCEQEGEGPCSFCGALVLKEG------STYDGLEESTAPTSDAKFAAEAYAKRLVEYDRNSAARTTVIDDQSDYYEIEGNNWLSNEEKQLLRKKQEETEEAELAKRSKVVVTFDLVGRKV 156
BLAST of mRNA_C-tenellus_contig760.2.1 vs. uniprot
Match: A0A835DGP0_9MAGN (zf-C2HC5 domain-containing protein n=1 Tax=Tetracentron sinense TaxID=13715 RepID=A0A835DGP0_9MAGN) HSP 1 Score: 100 bits (248), Expect = 3.980e-19 Identity = 79/211 (37.44%), Postives = 118/211 (55.92%), Query Frame = 3 Query: 378 TTNPSRT---IPTQSGKKKKAPSTTAPSHASTSGGKSKGGGTQQRPTVKAASPQPSTKSQLPPQKWSGVTCTCMAIRHSLITNCTTCGKIACEAEGGYECSFCRSPLPVTGREPTATNSYAG-SANDQPQSAALAKAVARKEKLLLFDRTSVARTRVLDDQGDHFSTY--NWLSREERERAEANEVARKEEQLARRRKVTVSFDIMGRKVV 992 T P+RT + SG++ K P+ T S ++ G + G ++++ K S + K + Q+ G C C A RH L++NC +CGKI CE EG CSFC + + G ++YAG + P S A A A A ++L+ +DR S ART V+DDQ D++ +WLS EE+E + + +E + ARR KV V+FD++GRKVV Sbjct: 107 TKRPTRTPKEVTVSSGRENKIPTETVESKSTHKGNQ---GNSKKKKAGKVVSLAEAAKGSIVFQQ--GKPCLCQARRHRLVSNCLSCGKIVCEQEGEGPCSFCGALVLKEG------STYAGLEESGLPLSDAEAAAEAFSKRLVDYDRNSAARTTVIDDQSDYYEIEGNSWLSIEEKEHLKKKQQEIEEAERARRSKVVVTFDLVGRKVV 306
BLAST of mRNA_C-tenellus_contig760.2.1 vs. uniprot
Match: M5WMR8_PRUPE (zf-C2HC5 domain-containing protein n=1 Tax=Prunus persica TaxID=3760 RepID=M5WMR8_PRUPE) HSP 1 Score: 98.2 bits (243), Expect = 4.740e-19 Identity = 61/144 (42.36%), Postives = 87/144 (60.42%), Query Frame = 3 Query: 570 GVTCTCMAIRHSLITNCTTCGKIACEAEGGYECSFCRSPLPVTGREPTATNSYAGSAND-QPQSAALAKAVARKEKLLLFDRTSVARTRVLDDQGDHFSTY--NWLSREERERAEANEVARKEEQLARRRKVTVSFDIMGRKVV 992 G C+C A RH L++NC +CGKI CE EG C+FC + + G ++YAG P S A A A A ++L+ +DR S ART V+DDQ D++ +WLS+EE+E + +E + A+R KV VSFD++GRKV+ Sbjct: 169 GKPCSCQARRHRLVSNCLSCGKIVCEQEGEGPCNFCGALVLKEG------STYAGLEESFAPTSDAEAAAEAYAKRLVEYDRDSAARTTVIDDQSDYYEIEGNSWLSKEEKELLIKKQEEIEEAERAKRSKVVVSFDLVGRKVI 306 The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig760.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-tenellus_contig760.2.1 >prot_C-tenellus_contig760.2.1 ID=prot_C-tenellus_contig760.2.1|Name=mRNA_C-tenellus_contig760.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=319bp MTSVPTTQPVATPLPTTNPSRTIPTQSGKKKKAPSTTAPSHASTSGGKSKback to top mRNA from alignment at C-tenellus_contig760:7581..9216+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-tenellus_contig760.2.1 ID=mRNA_C-tenellus_contig760.2.1|Name=mRNA_C-tenellus_contig760.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1636bp|location=Sequence derived from alignment at C-tenellus_contig760:7581..9216+ (Choristocarpus tenellus KU2346)back to top Coding sequence (CDS) from alignment at C-tenellus_contig760:7581..9216+ >mRNA_C-tenellus_contig760.2.1 ID=mRNA_C-tenellus_contig760.2.1|Name=mRNA_C-tenellus_contig760.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=957bp|location=Sequence derived from alignment at C-tenellus_contig760:7581..9216+ (Choristocarpus tenellus KU2346)back to top |