mRNA_C-tenellus_contig76.5.1 (mRNA) Choristocarpus tenellus KU2346
Overview
Homology
BLAST of mRNA_C-tenellus_contig76.5.1 vs. uniprot
Match: D7FWI9_ECTSI (Histone H2A n=6 Tax=Ectocarpus TaxID=2879 RepID=D7FWI9_ECTSI) HSP 1 Score: 219 bits (557), Expect = 9.420e-72 Identity = 116/124 (93.55%), Postives = 121/124 (97.58%), Query Frame = 1 Query: 1 MSGKGKGGRGDSKKSTTRSAKAGLQFPVGRVGRFLKQGKYATRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGDVTIASGGVLPNIHAVLLPKKSAKK 372 MSGKGKGGRG KKSTTRSAKAGLQFPVGRVGRFLK+GKYA+RVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARI+PRHIQLAVRNDEELNKLLG+VTIASGGVLPNIHAVLLPKK+ KK Sbjct: 1 MSGKGKGGRG--KKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKTVKK 122
BLAST of mRNA_C-tenellus_contig76.5.1 vs. uniprot
Match: D7G193_ECTSI (Histone H2A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G193_ECTSI) HSP 1 Score: 217 bits (552), Expect = 3.230e-70 Identity = 115/123 (93.50%), Postives = 120/123 (97.56%), Query Frame = 1 Query: 1 MSGKGKGGRGDSKKSTTRSAKAGLQFPVGRVGRFLKQGKYATRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGDVTIASGGVLPNIHAVLLPKKSAK 369 MSGKGKGGRG KKSTTRSAKAGLQFPVGRVGRFLK+GKYA+RVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARI+PRHIQLAVRNDEELNKLLG+VTIASGGVLPNIHAVLLPKK+ K Sbjct: 46 MSGKGKGGRG--KKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKTVK 166
BLAST of mRNA_C-tenellus_contig76.5.1 vs. uniprot
Match: A0A6H5KG79_9PHAE (Histone H2A n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG79_9PHAE) HSP 1 Score: 210 bits (535), Expect = 3.260e-68 Identity = 110/122 (90.16%), Postives = 119/122 (97.54%), Query Frame = 1 Query: 1 MSGKGKGGRGDSKKSTTRSAKAGLQFPVGRVGRFLKQGKYATRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGDVTIASGGVLPNIHAVLLPKKSA 366 MSGKGKGGRG KKST++S+KAGLQFPV R+GR+LK+GKYATRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARI+PRHIQLAVRNDEELNKLLG+VTIASGGVLPNIHAVLLPKKS+ Sbjct: 1 MSGKGKGGRG--KKSTSKSSKAGLQFPVARIGRYLKRGKYATRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKSS 120
BLAST of mRNA_C-tenellus_contig76.5.1 vs. uniprot
Match: A0A6U2JFS4_9STRA (Histone H2A n=6 Tax=Bacillariophyta TaxID=2836 RepID=A0A6U2JFS4_9STRA) HSP 1 Score: 208 bits (530), Expect = 1.230e-67 Identity = 110/123 (89.43%), Postives = 117/123 (95.12%), Query Frame = 1 Query: 1 MSGKGKGGRGDSKKSTTRSAKAGLQFPVGRVGRFLKQGKYATRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGDVTIASGGVLPNIHAVLLPKKSAK 369 MSGKGKGGRG KKSTT SAKAGLQFPVGR+GR+L+QGKYATR+GAGAPVYLAAVLEYL AE+LELAGNAARDNKK+RIVPRHI LAV+NDEELNKLLG VTIASGGVLPNIHAVLLPKKSAK Sbjct: 1 MSGKGKGGRGG-KKSTTSSAKAGLQFPVGRIGRYLRQGKYATRMGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHITLAVKNDEELNKLLGGVTIASGGVLPNIHAVLLPKKSAK 122
BLAST of mRNA_C-tenellus_contig76.5.1 vs. uniprot
Match: D7FVQ5_ECTSI (Histone H2A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVQ5_ECTSI) HSP 1 Score: 210 bits (535), Expect = 1.680e-67 Identity = 110/122 (90.16%), Postives = 119/122 (97.54%), Query Frame = 1 Query: 1 MSGKGKGGRGDSKKSTTRSAKAGLQFPVGRVGRFLKQGKYATRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGDVTIASGGVLPNIHAVLLPKKSA 366 MSGKGKGGRG KKST++S+KAGLQFPV R+GR+LK+GKYATRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARI+PRHIQLAVRNDEELNKLLG+VTIASGGVLPNIHAVLLPKKS+ Sbjct: 52 MSGKGKGGRG--KKSTSKSSKAGLQFPVARIGRYLKRGKYATRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKSS 171
BLAST of mRNA_C-tenellus_contig76.5.1 vs. uniprot
Match: A0A448ZH28_9STRA (Histone H2A n=12 Tax=Bacillariophyta TaxID=2836 RepID=A0A448ZH28_9STRA) HSP 1 Score: 207 bits (528), Expect = 2.490e-67 Identity = 108/123 (87.80%), Postives = 117/123 (95.12%), Query Frame = 1 Query: 1 MSGKGKGGRGDSKKSTTRSAKAGLQFPVGRVGRFLKQGKYATRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGDVTIASGGVLPNIHAVLLPKKSAK 369 MSGKGKGGRG+ KKSTT SAKAGLQFPVGR+GR+L+QGKYATR+GAGAPVYLAAVLEYL AE+LELAGNAARDNKK+RIVPRHI LAV+NDEELNKLLG VTIASGGVLPNIHA+LLPKKS K Sbjct: 1 MSGKGKGGRGE-KKSTTASAKAGLQFPVGRIGRYLRQGKYATRMGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHITLAVKNDEELNKLLGGVTIASGGVLPNIHAILLPKKSGK 122
BLAST of mRNA_C-tenellus_contig76.5.1 vs. uniprot
Match: D8LLP0_ECTSI (Histone H2A n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLP0_ECTSI) HSP 1 Score: 207 bits (526), Expect = 4.560e-67 Identity = 108/120 (90.00%), Postives = 115/120 (95.83%), Query Frame = 1 Query: 1 MSGKGKGGRGDSKKSTTRSAKAGLQFPVGRVGRFLKQGKYATRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGDVTIASGGVLPNIHAVLLPKK 360 MSGKGKGGRG KK T+RSAKAGLQFPVGR+GRF+KQGKY++RVG GAPVY+AAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELN+LLGD TIASGGVLPNIHAVLLPKK Sbjct: 1 MSGKGKGGRG--KKITSRSAKAGLQFPVGRIGRFIKQGKYSSRVGGGAPVYMAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNRLLGDATIASGGVLPNIHAVLLPKK 118
BLAST of mRNA_C-tenellus_contig76.5.1 vs. uniprot
Match: A0A1E7EZ55_9STRA (Histone H2A n=3 Tax=Bacillariophyta TaxID=2836 RepID=A0A1E7EZ55_9STRA) HSP 1 Score: 205 bits (522), Expect = 3.120e-66 Identity = 107/127 (84.25%), Postives = 117/127 (92.13%), Query Frame = 1 Query: 1 MSGKGK--GGRGDSKKSTTRSAKAGLQFPVGRVGRFLKQGKYATRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGDVTIASGGVLPNIHAVLLPKKSAKKA 375 MSGKGK GGRG+ K STT SAKAGLQFPVGR+GR+L+QGKYATR+GAGAPVYLAAVLEYL AE+LELAGNAARDNKK+RI+PRHI LAV+NDEELNKLLGDVTIA GGVLPNIHAVLLPKKS K + Sbjct: 1 MSGKGKXXGGRGEKKVSTTSSAKAGLQFPVGRIGRYLRQGKYATRMGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIIPRHITLAVKNDEELNKLLGDVTIAQGGVLPNIHAVLLPKKSQKSS 127
BLAST of mRNA_C-tenellus_contig76.5.1 vs. uniprot
Match: A0A6U3UCP9_9STRA (Histone H2A n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3UCP9_9STRA) HSP 1 Score: 205 bits (522), Expect = 4.940e-66 Identity = 108/123 (87.80%), Postives = 117/123 (95.12%), Query Frame = 1 Query: 1 MSGKGKGGRGDSKKSTTRSAKAGLQFPVGRVGRFLKQGKYATRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGDVTIASGGVLPNIHAVLLPKKSAK 369 MSGKGK GRG+ KKSTT SAKAGLQFPVGR+GR+L+QGKYATR+GAGAPVYLAAVLEYL AE+LELAGNAARDNKK+RIVPRHI LAV+NDEELNKLLG VTIASGGVLPNIHAVLLPKKS+K Sbjct: 28 MSGKGKEGRGE-KKSTTASAKAGLQFPVGRIGRYLRQGKYATRMGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHITLAVKNDEELNKLLGGVTIASGGVLPNIHAVLLPKKSSK 149
BLAST of mRNA_C-tenellus_contig76.5.1 vs. uniprot
Match: A0A061QUG5_9CHLO (Histone H2A n=4 Tax=core chlorophytes TaxID=2692248 RepID=A0A061QUG5_9CHLO) HSP 1 Score: 204 bits (520), Expect = 6.100e-66 Identity = 107/124 (86.29%), Postives = 115/124 (92.74%), Query Frame = 1 Query: 1 MSGKGKGGRGDSKKSTTRSAKAGLQFPVGRVGRFLKQGKYATRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGDVTIASGGVLPNIHAVLLPKKSAKK 372 MSG+GKG KK+ +RSAKAGLQFPVGRV R+LK+GKYATR+GAGAPVYLAAVLEYLTAEVLELAGNAARDNKK RIVPRHIQLAVRNDEEL+KLLGDVTIASGGVLPNIH+VLLPKKS KK Sbjct: 1 MSGRGKGKSAAGKKAVSRSAKAGLQFPVGRVARYLKKGKYATRIGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIASGGVLPNIHSVLLPKKSDKK 124 The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig76.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-tenellus_contig76.5.1 >prot_C-tenellus_contig76.5.1 ID=prot_C-tenellus_contig76.5.1|Name=mRNA_C-tenellus_contig76.5.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=126bp MSGKGKGGRGDSKKSTTRSAKAGLQFPVGRVGRFLKQGKYATRVGAGAPVback to top mRNA from alignment at C-tenellus_contig76:18515..18892+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-tenellus_contig76.5.1 ID=mRNA_C-tenellus_contig76.5.1|Name=mRNA_C-tenellus_contig76.5.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=378bp|location=Sequence derived from alignment at C-tenellus_contig76:18515..18892+ (Choristocarpus tenellus KU2346)back to top Coding sequence (CDS) from alignment at C-tenellus_contig76:18515..18892+ >mRNA_C-tenellus_contig76.5.1 ID=mRNA_C-tenellus_contig76.5.1|Name=mRNA_C-tenellus_contig76.5.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=378bp|location=Sequence derived from alignment at C-tenellus_contig76:18515..18892+ (Choristocarpus tenellus KU2346)back to top |