mRNA_C-tenellus_contig76.3.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig76.3.1
Unique NamemRNA_C-tenellus_contig76.3.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig76.3.1 vs. uniprot
Match: D7FPH1_ECTSI (Formin-like 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPH1_ECTSI)

HSP 1 Score: 144 bits (364), Expect = 2.610e-34
Identity = 88/219 (40.18%), Postives = 137/219 (62.56%), Query Frame = 3 
Query:   81 MGVLRKILKKFKGGEWGKARQKFKDDFDLDDNLRTLFSKIDNTTKRNIL--LKFGDQHQKSILQGQEQGDVVHPNVVAPRDGVEVELASE---DKDRSPKMYARELV-MSSIPKIKILEALRVSIKAADDEWIKTFKENDGMAGIYKVMAEVGECREDYLE-EGDDDNERVVPQEDIELEEELVHCLMLLMNKPVGLTMLGESTDLMPLLAVS*S*TCS 716
            MG L K L++       + R        LDD+LR L  K+ N+TKRN++  L  G+     +L  Q +G +       P+    +E AS    +K++S K +A  L+ +  +P++K ++ L  ++K AD++W+ +F++N G+AGIYK MAE+ + REDYL+ +GDDDN+  VP+E+++LEEELV C+M+L+NKP GL  L  S+DL+PLLA S   +CS
Sbjct:    1 MGFLNKYLRRTSKKTTSEER--------LDDDLRQLLKKLPNSTKRNLIQDLSNGEGGSSRVLSAQARG-LKDRRASEPQFAAIMEAASTVVAEKEKSAKDFADSLMEVEDLPELKEIKELHRALKKADEDWVASFRDNGGVAGIYKAMAELAQSREDYLDNDGDDDNDHEVPEEEVKLEEELVRCVMILLNKPQGLMTLEASSDLLPLLARSAIDSCS 210
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig76.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FPH1_ECTSI2.610e-3440.18Formin-like 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig76contigC-tenellus_contig76:9741..14373 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FPH1
PFAMsDrf_FH3,Drf_GBD,FH2
Model size1099
Max annot lvl2759|Eukaryota
KEGG koko:K04512,ko:K05745,ko:K10293,ko:K11238
KEGG Pathwayko04011,ko04310,ko04810,map04011,map04310,map04810
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003779,GO:0005488,GO:0005515,GO:0005522,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005886,GO:0005938,GO:0006928,GO:0006996,GO:0007010,GO:0007015,GO:0008064,GO:0008092,GO:0008150,GO:0008154,GO:0008289,GO:0009987,GO:0010638,GO:0015629,GO:0016020,GO:0016043,GO:0016477,GO:0022607,GO:0030029,GO:0030036,GO:0030041,GO:0030832,GO:0030833,GO:0030838,GO:0030865,GO:0030866,GO:0031254,GO:0031334,GO:0031344,GO:0031345,GO:0032153,GO:0032154,GO:0032155,GO:0032271,GO:0032273,GO:0032535,GO:0032956,GO:0032970,GO:0033043,GO:0034622,GO:0035091,GO:0040011,GO:0043167,GO:0043168,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043254,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0044877,GO:0045010,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048870,GO:0050789,GO:0050794,GO:0051015,GO:0051128,GO:0051129,GO:0051130,GO:0051179,GO:0051258,GO:0051493,GO:0051495,GO:0051674,GO:0060491,GO:0065003,GO:0065007,GO:0065008,GO:0071840,GO:0071944,GO:0090066,GO:0097435,GO:0098590,GO:0099568,GO:0110053,GO:0120032,GO:0120033,GO:0120035,GO:1902903,GO:1902905,GO:1904170,GO:1904171
Exons5
Evalue8.98e-36
EggNOG OGsKOG1922@1|root,KOG1922@2759|Eukaryota
Descriptionactin binding
Cds size621
COG categoryE
BRITEko00000,ko00001,ko03029,ko04121,ko04147
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig76.3.1prot_C-tenellus_contig76.3.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig76 10139..14293 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790046.2029073-UTR-C-tenellus_contig76:9740..101381680790046.2029073-UTR-C-tenellus_contig76:9740..10138Choristocarpus tenellus KU2346UTRC-tenellus_contig76 9741..10138 -
1680790046.280821-UTR-C-tenellus_contig76:14293..143731680790046.280821-UTR-C-tenellus_contig76:14293..14373Choristocarpus tenellus KU2346UTRC-tenellus_contig76 14294..14373 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790046.2200482-CDS-C-tenellus_contig76:10138..102671680790046.2200482-CDS-C-tenellus_contig76:10138..10267Choristocarpus tenellus KU2346CDSC-tenellus_contig76 10139..10267 -
1680790046.2296915-CDS-C-tenellus_contig76:11395..114641680790046.2296915-CDS-C-tenellus_contig76:11395..11464Choristocarpus tenellus KU2346CDSC-tenellus_contig76 11396..11464 -
1680790046.2406554-CDS-C-tenellus_contig76:13087..132401680790046.2406554-CDS-C-tenellus_contig76:13087..13240Choristocarpus tenellus KU2346CDSC-tenellus_contig76 13088..13240 -
1680790046.2584593-CDS-C-tenellus_contig76:13899..141061680790046.2584593-CDS-C-tenellus_contig76:13899..14106Choristocarpus tenellus KU2346CDSC-tenellus_contig76 13900..14106 -
1680790046.269341-CDS-C-tenellus_contig76:14230..142931680790046.269341-CDS-C-tenellus_contig76:14230..14293Choristocarpus tenellus KU2346CDSC-tenellus_contig76 14231..14293 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig76.3.1

>prot_C-tenellus_contig76.3.1 ID=prot_C-tenellus_contig76.3.1|Name=mRNA_C-tenellus_contig76.3.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=207bp
MGVLRKILKKFKGGEWGKARQKFKDDFDLDDNLRTLFSKIDNTTKRNILL
KFGDQHQKSILQGQEQGDVVHPNVVAPRDGVEVELASEDKDRSPKMYARE
LVMSSIPKIKILEALRVSIKAADDEWIKTFKENDGMAGIYKVMAEVGECR
EDYLEEGDDDNERVVPQEDIELEEELVHCLMLLMNKPVGLTMLGESTDLM
PLLAVS*
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mRNA from alignment at C-tenellus_contig76:9741..14373-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig76.3.1 ID=mRNA_C-tenellus_contig76.3.1|Name=mRNA_C-tenellus_contig76.3.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=4633bp|location=Sequence derived from alignment at C-tenellus_contig76:9741..14373- (Choristocarpus tenellus KU2346)
AAAAAAGAGGTTTCCTAATACCCACCCTATTCCTTCTACGCTTGGTTCCT
TCTAACGACCTTGGTCAATTGGTCATCTTCATGGGTGTCCTTCGCAAGAT
ACTGAAAAAGTTTAAGGGGGGGGAATGGGGCAAGGCGCGCCAGGTGTGTG
CTGGAGGTTGCAATGAGGTCTTTGTACGATGCACTCAATGTACCCACCTT
AATATTTTGATCGTTCTACAGATATGACCTACCCTCCTTTCTCGCTGTTT
TACGTCCATTCTCCTAGAAATTCAAGGATGACTTCGACTTGGACGATAAC
CTCCGCACCTTGTTCAGCAAGATAGACAATACTACAAAGCGAAACATACT
CCTCAAGTTCGGGGACCAGCACCAGAAATCAATCCTTCAAGGTCAAGAAC
AGGGGGATGTGGTCCATCCCAACGTCGTGGCCCCTAGGGATGGCGTCGAA
GTGGAACTAGCCAGTGAAGATAAGGTAACTCGCAATTGGCTTCGCTGACC
CAGGAAGTTGCAGAAGTGTACATAAGGAATCTTGGGGTCGAAAATTGTAT
TACTTGGCATCGTGAAAAGTTAACCAAGTCTGTCTCTCTCACCATAGGGT
GGAACAAAACGGTTGTGATAAGCTCACCCTCTGAAACAGAACGAAATTTG
TTCTAGATGCTGGGAGTGTGTCAGGGTCCAATGACATTTTGCTGGGTGTC
GTCGAGGCCTTAGCACCTATCGAGTTGTTTGACCGTTGTCTGGAAGACTC
CAAACCATTCCAGGTTGACAGTCGTCTCATTGTCAAGTAGGAAATGGGAA
TACTCCTATTAAGCACTGAGTAACAACCGACACAGGAGCTCAGTGAAAGA
ACAGAGAAAGTCCATATATCTTCGAAGGTATCTAGGAAAATTCGTCAAGA
GCGAAACAGCCTCTTCTGGGCGCAATTTTCTCACTAGACTTGCTTGGATC
CACTCCCCAAGAACATCTTGTCGCGGTGGTAAGAGTCAACCCGTGTGTTT
TCAGCTGATATGCACCCCTTACCCTGGCCTAGCCCCCCTACCCTTCTCTC
GCTATTGTTCTCTTTCCGTCCACACTCCTATAGGCCCCTTCCCATCCCTT
ACACATTCTTAACCCTGCTTTGGTGTTCCACAGGATAGGTCTCCCAAGAT
GTATGCCAGGGAGTTGGTTATGTCCTCCATCCCAAAGATCAAGATCTTGG
AAGCCTTGAGGGTATCCATCAAGGCAGCTGATGACGAGTGGATTAAAACG
TTCAAAGAAAATGATGGCATGGCTGGTATATACAAGGTATGCACATGTGT
AAGGAGTGAAAGTATCTTAGAGGGTACGAGTTTTGCCCTGTTTGTCCATT
TGGGGCTTGACTTCACATGGACGTTTTATTGCATTTTCCTTCGCCAAAAT
GTTTCGGAGTGGGTAAAATGTGTATGTTATTAAACGTGTGTCCAGAACAT
CGACATTGACACTTCCTAATACACACAATAGCCAAAATTACATCAAAATT
GCAACATTGGACTTTGACCCCCATATGGACGCGGCTGTACCCTCTAAGAT
ACTTTGGCTCTAAGACTAACAGAGCTTTACTGCTTGAAGCCTTCACCTTT
TTAGCACATTGGAATTGCTCGCATTTTCTTTGAGATGTTTAAAAATTAAG
GACCATTCTTGTCGACAAAGAATTGTCATCCACTTTGGAGCACTGTCAAG
GAAAGTGGATTAAAATAGTCCATTTTGAAGGATTTAATTCGGATTACAAG
ATCAAGGACCATGTAGATCAGTCATACTCCGATCCACCATTTTAAAACCA
AGCTACGTTGGTTCTAATGCACTTTGAGACACAGGATTTTTAATTGGTGG
GTCAAAGTATCTGGGGGGGTGGGGGGGGGGGGGGCACCACCAGAGGGTCC
ATTCAGACCCNNNNNNNNNNTAGTTTAGGTTGGGTGTGGGGGGTGGTTGT
GGGGGGGGGGGGGGGGGGGGGGGGTGGGGGGGGGGGGGGGGGGGGGGGTC
TACACCAGAGGGTCCATTCAGACCCTGACCAGGAGAAGTGGACTCACACT
ATCCATCCGACGCATGCAACCAAATCACCCAAAAATCATGACATGAAAAA
ATGGGCCCGAATGGACAGTCGCCACCCCCCCCCCCCCAAGATACATTGAG
CCTGGTGTGTGCTATCGTTTATTTTGGGATTTTTCTTAGTCCCTAGTATA
AATAGTACATAGAAAATTTTGAGCCTGATAAATTGATAGTTATTGATTCG
TTCAATTCATTTCACATGCTGTAAGGGCAGTGTTGGTCTCATTCCATGCC
TGCATTTACAATTGCACATGGGGTGGAGGATTCGACAACTGTGTATTTCT
GGTGAGTGTGGGAGAACTTGAACCTACCCAGATGCAACAATTGTGGCTGT
AGCTGTTTGATGGATCTTGATGTGGAGAGATGATCAATACTAATTTTCAC
TGCGAGGATATATTATTTATCTTTTTGCATCTCATACTGTTGCGTATGAT
AAATGTCCAACCCTTTTACACAGTTGTTGGGAGTGGGGGGGGGGCAAAGG
TGAGCACAGACTCTGTTGCATGCTGTTAGGCAATGTGGTGAGGGTGAAAA
GTGGCTACCTAATCCTGAGAACACTTGATATTCTTGAAATATTTCCACAG
AACAGATCCTAGGGGGTGTTTTGCTGTAAAAATACACTGTATTCTAGTAT
GTGTTGATCTGACCCGAGGTGATGATGGCTTTGTTTAAGATAGTGAAGGT
ATTTTCTATTTGCCTAAGGCTGTTCTCCCTGTTGGACTCAAGTGGTTGAT
TCACATTTGCAATCAGAGATTTTGCAGTTGCAGAGTTTATCTTGCAGCTC
GATCCCCTTTTGATCCCTTGACTCCCCTCGCCATGTACATCCTTTCGTGC
CTCTAATAGGTCATGGCAGAGGTGGGGGAGTGCAGGGAGGATTATCTGGA
GGAGGGGGACGATGACAATGAGAGAGTGGTGAGAAGGACAAAGAGGACTA
TGAGATGTGTTGCATGCTTTTGTTACACTGTTTGTTGCTATTGTGATCTG
ATCTGATCGTGATAGTGGTGTGTATTCACATGCGAATACTGGCTGGGAAA
CCAATGATTTGGACATATTTCTATCTACTTCACCCCTGATTTGATGGGAC
TCGACTGTCAGGGGCATGTTCTTTATGCAAACTATTAGAGGTTTTGTTGA
TACAATTGTGTGTTCTACTATTTTACCTTCAAGTCGAAATACTTCACCAC
ACCACTGATATACACTGAATCATTTGCTTGGTGCTAGCACCCAGAATCTA
TTATTGATCTTGATAGCATGAAAGCTTGCGAAATTTTCTTTTTATGGGGT
TTTTGGGTTGTTCAAATTATATGTGTATATTGCAGTGTGGAGACAGTCCT
ACCTGTGAAATATTGTAGTTTTAAGTGAAGTACTTATGATCTGTTGGAAG
TTCTAGGACTGTGTTGGTTGTAATAATGCAGGTTGAGATCACTTGGGGAC
TCGATGATTGTGACACTGTGTAGACTTATGTGAGTGTCCACTGTATTTGT
TGAGGTGATACTATGTGAAATGCAATGTGAACTGGGTTTTAGTGTTGATT
AGTTGTGATCGTTGATATAGATACACTTCAGTGCATATATTCAGTATGCA
AATGGGCTAGAGTGTCTAAGTTGAATACCTGTTAGTATAGTTGGGGATGT
AAGCAGGCTATGGAATTTGATTGAGGTTTTGGATTTCGAATTCTGGGGTA
GTCCATTCTTTGTGTAAAATATAGCAGTTTTTGTACGCTTGTGTGAGTGT
AGGTAGTGACTTTTTCGAAAAGTGTTGTAGGGTTAGGGTTAGGGTACGAT
AAATTTTTTGAGGTGTTGTGTATATATTGGCGTGATGCCAAGATGCTATT
ACCACTTGTAAGGATGATTGTTTAGGATTTTGTGTCGTGGTCAATCCAAC
ACTCTGTACGTAAGTACAGTCCAATGCTCCATTTCTGAGAGGCAAAGGAT
CCTAACTTGCCATTTGCTGTTGTCATTGTTGCCTTCAATCGCCCCCCCCC
CCCCCCCCCCCGCCCCCCCCCCCCTCTGTGCTACATTGCACCTTTTTTTT
TTGTAGGTACCTCAAGAGGATATTGAGCTGGAAGAAGAGCTGGTACACTG
CCTGATGCTCCTCATGAACAAACCTGTGGGCTTGACAATGCTCGGGGAAA
GTACTGATCTCATGCCCCTACTTGCTGTAAGTTGAAGTTGAACATGCAGC
ATAAACCCGGTTACCACGACCTAGAGGTGTAGTATTGTTGCCTCTTTGAT
AAACTAATTTTCCCCCCTTGTGGATACTAGCCTTGGAGGTGTATTCACCC
TCTATCCATCTCTGTTGCCAAAATATCTTCTTGATGAACTCTGTACCTGT
CTGCATATATAGTAGGTATTCTTTAGGAGGTGAACGTACACACTGAGGCT
AGTAATGTCTCTTTTTGTTTGTTCTCAGGATACCCACCAATATTTGTCTC
TTCATTCCTTTCCTTTTGTGTTCCTCACTTACTCTCTACCATTGTTGTGC
TTTTAAATTATCCTGACAAACCCCCTGAGCCACTCTCAGGATATGTTATC
ACATTATAGTTGGTTCAACTCTTTCAACCTTCA
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Coding sequence (CDS) from alignment at C-tenellus_contig76:9741..14373-

>mRNA_C-tenellus_contig76.3.1 ID=mRNA_C-tenellus_contig76.3.1|Name=mRNA_C-tenellus_contig76.3.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=621bp|location=Sequence derived from alignment at C-tenellus_contig76:9741..14373- (Choristocarpus tenellus KU2346)
ATGGGTGTCCTTCGCAAGATACTGAAAAAGTTTAAGGGGGGGGAATGGGG
CAAGGCGCGCCAGAAATTCAAGGATGACTTCGACTTGGACGATAACCTCC
GCACCTTGTTCAGCAAGATAGACAATACTACAAAGCGAAACATACTCCTC
AAGTTCGGGGACCAGCACCAGAAATCAATCCTTCAAGGTCAAGAACAGGG
GGATGTGGTCCATCCCAACGTCGTGGCCCCTAGGGATGGCGTCGAAGTGG
AACTAGCCAGTGAAGATAAGGATAGGTCTCCCAAGATGTATGCCAGGGAG
TTGGTTATGTCCTCCATCCCAAAGATCAAGATCTTGGAAGCCTTGAGGGT
ATCCATCAAGGCAGCTGATGACGAGTGGATTAAAACGTTCAAAGAAAATG
ATGGCATGGCTGGTATATACAAGGTCATGGCAGAGGTGGGGGAGTGCAGG
GAGGATTATCTGGAGGAGGGGGACGATGACAATGAGAGAGTGGTACCTCA
AGAGGATATTGAGCTGGAAGAAGAGCTGGTACACTGCCTGATGCTCCTCA
TGAACAAACCTGTGGGCTTGACAATGCTCGGGGAAAGTACTGATCTCATG
CCCCTACTTGCTGTAAGTTGA
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