mRNA_C-tenellus_contig7569.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7569.2.1
Unique NamemRNA_C-tenellus_contig7569.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig7569.2.1 vs. uniprot
Match: A0A835YRS3_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRS3_9STRA)

HSP 1 Score: 128 bits (322), Expect = 2.950e-36
Identity = 54/77 (70.13%), Postives = 66/77 (85.71%), Query Frame = 1
Query:  106 GKYDGQVWDDAAKKDVLSTYDASKPWSEINFDPFKKDAKGNSCDTRGFYPGEGKYKDPIRPAVSWAEYQAKLQADGK 336
            GKYDG++WD+AAK+DVLSTYDASKPW E NFDP+K+D  GN+CD  G+YPGEGKYKDPIRP+VS+AEYQ + +   K
Sbjct:   37 GKYDGKLWDEAAKQDVLSTYDASKPWGETNFDPYKRDGNGNACDPSGYYPGEGKYKDPIRPSVSFAEYQKQREEAAK 113          
BLAST of mRNA_C-tenellus_contig7569.2.1 vs. uniprot
Match: D7G3Z1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3Z1_ECTSI)

HSP 1 Score: 114 bits (285), Expect = 1.980e-30
Identity = 51/79 (64.56%), Postives = 64/79 (81.01%), Query Frame = 1
Query:  106 GKYDGQVWDDAAKKDVLSTYDASKPWSEINFDPFKKDAKGNSCDTRGFYPGEGKYKDPIRPAVSWAEY---QAKLQADG 333
            GKYDG++WDDAAK DV S Y+ ++PWS+ NFDPF KDA GN CD+ G+YPGE  YKDPIRPAVS+A+Y   +AK +A+G
Sbjct:   52 GKYDGKLWDDAAKDDVKSMYNPNEPWSDNNFDPFVKDAAGNKCDSSGYYPGETMYKDPIRPAVSYADYLAAKAKKEAEG 130          
BLAST of mRNA_C-tenellus_contig7569.2.1 vs. uniprot
Match: A0A7S2CF61_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CF61_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 2.180e-21
Identity = 47/96 (48.96%), Postives = 64/96 (66.67%), Query Frame = 1
Query:   43 AGVSGFVVPPSGAVRAP-ALLGGKYDGQVWDDAAKKDVLSTYDASKPWSEINFDPFKKDAKGNSCDTRGFYPGEGKYKDPIRPAVSWAEYQAKLQA 327
            AG S FVVP    +R   A+  GKYD Q+WD AAK+DV + +D   P S++NF+PF+++A GN+ D  GF+PGE KYKDP+RP  S+    A+  A
Sbjct:   14 AGASAFVVPT--VLRTSVAVKYGKYDEQLWDIAAKQDVFAAWDPQSPRSDVNFNPFERNADGNAADCSGFFPGEAKYKDPMRPDASFEIMMAENAA 107          
BLAST of mRNA_C-tenellus_contig7569.2.1 vs. uniprot
Match: A0A7S3NH85_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NH85_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 3.720e-20
Identity = 42/94 (44.68%), Postives = 64/94 (68.09%), Query Frame = 1
Query:   49 VSGFV--VPPSGAVRAPALLGGKYDGQVWDDAAKKDVLSTYDASKPWSEINFDPFKKDAKGNSCDTRGFYPGEGKYKDPIRPAVSWAEYQAKLQ 324
            +SGF+   P S  V+ P    GKYDGQ+WD  AK D+ + +D + P SE NF+PF+++  GN+CD  G++PG+ KYKDP+RP++ +A   A+ +
Sbjct:   16 ISGFMHQTPVSRPVK-PIFGAGKYDGQLWDMEAKMDIWNMWDPNSPRSETNFNPFERNNDGNACDPSGWFPGDTKYKDPMRPSMDYAGMLAEKE 108          
BLAST of mRNA_C-tenellus_contig7569.2.1 vs. uniprot
Match: B7G965_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G965_PHATC)

HSP 1 Score: 85.5 bits (210), Expect = 4.130e-19
Identity = 52/102 (50.98%), Postives = 66/102 (64.71%), Query Frame = 1
Query:    1 MKTSFALCCMAVAAAGVSGFVVPPSGAVRAPALL--GGKYDGQVWDDAAKKDVLSTYDASKPWSEINFDPFKKDAKGNSCDTRGFYPGEGKYKDPIRPAVSW 300
            MKT+F      VA A  S F   PS   R+   L  GGKY+GQ++D+ AKKDV + +D S+P S +NF+PF+   +GNS D  GFYPGEG YKDPIR  VS+
Sbjct:    1 MKTAFFAVLSLVATA--SAFAPQPSFGARSMTHLFSGGKYEGQLFDNDAKKDVYAAWDPSQPRSPLNFNPFET-WEGNSPDASGFYPGEGGYKDPIRGDVSF 99          
BLAST of mRNA_C-tenellus_contig7569.2.1 vs. uniprot
Match: A0A7S2VAU7_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2VAU7_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 4.350e-18
Identity = 38/71 (53.52%), Postives = 53/71 (74.65%), Query Frame = 1
Query:  106 GKYDGQVWDDAAKKDVLSTYDASKPWSEINFDPFKKDAKGNSCDTRGFYPGEGKYKDPIRPAVSWAEYQAK 318
            GKYDGQ W+  AK+++ + +D ++P S  NF+PF+   +GNS D  GFYPGEG+YKDP+RP VS+A  QA+
Sbjct:   77 GKYDGQEWNIDAKQEIYAAWDPAQPRSVFNFNPFET-FEGNSPDASGFYPGEGRYKDPVRPDVSFASMQAE 146          
BLAST of mRNA_C-tenellus_contig7569.2.1 vs. uniprot
Match: A0A7S1TN95_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TN95_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 6.680e-18
Identity = 41/99 (41.41%), Postives = 60/99 (60.61%), Query Frame = 1
Query:   28 MAVAAAGVSGFVVPPSGAVRAPALLGGKYDGQVWDDAAKKDVLSTYDASKPWSEINFDPFKKDAKGNSCDTRGFYPGEGKYKDPIRPAVSWAEYQAKLQ 324
            +A A  G +   VP +   R    +  KY GQVWD  A KDV + +D + P +E NF+PF+K+  GN CD  G++PG+G Y+DPIRP V + +  A+ +
Sbjct:   36 IAAALFGGANAFVPAATNGRMATKINSKYFGQVWDFEAMKDVYNQWDPNAPRTEDNFNPFEKNKDGNQCDPNGWFPGDGLYRDPIRPDVDFMKVMAEQE 134          
BLAST of mRNA_C-tenellus_contig7569.2.1 vs. uniprot
Match: A0A7S4IKF6_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IKF6_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 2.140e-16
Identity = 47/105 (44.76%), Postives = 63/105 (60.00%), Query Frame = 1
Query:    1 MKTSFALCCMAVAAAGVSGFVVPPSGAVRAPALLG---GKYDGQVWDDAAKKDVLSTYDASKPWSEINFDPFKKDAKGNSCDTRGFYPGEGKYKDPIRPAVSWAE 306
            MKT+FAL  +A +A   S F     GA R    +    G+YD Q+WD  AKKDV + +D + P S  NF+PF+   +GNS D  G YPGE +YKDPIRP  ++ +
Sbjct:    1 MKTAFALVTLAASA---SAFAPARFGASRRTTAVFFEYGEYDEQLWDSEAKKDVYTKWDPNSPRSTKNFNPFET-FEGNSPDASGIYPGETRYKDPIRPDTNFQQ 101          
BLAST of mRNA_C-tenellus_contig7569.2.1 vs. uniprot
Match: A0A7S4HPX0_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HPX0_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 8.700e-16
Identity = 36/65 (55.38%), Postives = 47/65 (72.31%), Query Frame = 1
Query:  106 GKYDGQVWDDAAKKDVLSTYDASKPWSEINFDPFKKDAKGNSCDTRGFYPGEGKYKDPIRPAVSW 300
            GKYD Q+WD  AKK++ + +D + P S  NF+PF+   +GNS D  GFYPGEG+YKDP RP VS+
Sbjct:  115 GKYDEQMWDGDAKKEIYAAWDPNSPRSPANFNPFET-WEGNSPDASGFYPGEGRYKDPARPDVSF 178          
BLAST of mRNA_C-tenellus_contig7569.2.1 vs. uniprot
Match: A0A7S0AS99_9STRA (Hypothetical protein (Fragment) n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AS99_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 3.310e-15
Identity = 42/79 (53.16%), Postives = 53/79 (67.09%), Query Frame = 1
Query:  106 GKYDGQVWDDAAKKDVLSTYDASKPWSEINFDPFKKDAKGNSCDTRGFYPGEGKYKDPIRPAVSWA---EYQAKLQADG 333
            GKYD Q+WD AAKKDV ST+D + P +  NF+PF+    GNS D  G YPGE +YKDP R  V++A   E +A L+A G
Sbjct:   41 GKYDEQLWDHAAKKDVYSTWDPNAPRTSANFNPFET-FDGNSPDASGIYPGENRYKDPKRGDVNYAQMLEEKADLEAMG 118          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7569.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
A0A835YRS3_9STRA2.950e-3670.13Uncharacterized protein n=2 Tax=Tribonema minus Ta... [more]
D7G3Z1_ECTSI1.980e-3064.56Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2CF61_9STRA2.180e-2148.96Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S3NH85_9STRA3.720e-2044.68Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
B7G965_PHATC4.130e-1950.98Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
A0A7S2VAU7_9STRA4.350e-1853.52Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A7S1TN95_9STRA6.680e-1841.41Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S4IKF6_9STRA2.140e-1644.76Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S4HPX0_9STRA8.700e-1655.38Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S0AS99_9STRA3.310e-1553.16Hypothetical protein (Fragment) n=1 Tax=Minutocell... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7569contigC-tenellus_contig7569:2058..2869 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2850.Phatr54979
Model size339
Max annot lvl2836|Bacillariophyta
Hectar predicted targeting categorysignal peptide
Exons2
Evalue6.78e-20
EggNOG OGs2E4K9@1|root,2SBFZ@2759|Eukaryota,2XD68@2836|Bacillariophyta
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-19_000740.1
Cds size339
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790044.9601026-CDS-C-tenellus_contig7569:2057..22701680790044.9601026-CDS-C-tenellus_contig7569:2057..2270Choristocarpus tenellus KU2346CDSC-tenellus_contig7569 2058..2270 +
1680790044.9728355-CDS-C-tenellus_contig7569:2743..28691680790044.9728355-CDS-C-tenellus_contig7569:2743..2869Choristocarpus tenellus KU2346CDSC-tenellus_contig7569 2744..2869 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7569.2.1prot_C-tenellus_contig7569.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7569 2058..2869 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7569.2.1

>prot_C-tenellus_contig7569.2.1 ID=prot_C-tenellus_contig7569.2.1|Name=mRNA_C-tenellus_contig7569.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=113bp
MKTSFALCCMAVAAAGVSGFVVPPSGAVRAPALLGGKYDGQVWDDAAKKD
VLSTYDASKPWSEINFDPFKKDAKGNSCDTRGFYPGEGKYKDPIRPAVSW
AEYQAKLQADGK*
back to top

mRNA from alignment at C-tenellus_contig7569:2058..2869+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7569.2.1 ID=mRNA_C-tenellus_contig7569.2.1|Name=mRNA_C-tenellus_contig7569.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=812bp|location=Sequence derived from alignment at C-tenellus_contig7569:2058..2869+ (Choristocarpus tenellus KU2346)
ATGAAGACATCTTTCGCTCTATGCTGCATGGCCGTGGCCGCCGCTGGCGT GTCCGGCTTCGTCGTGCCACCATCCGGTGCTGTGCGTGCCCCCGCTCTGC TGGGTGGCAAGTACGATGGCCAGGTGTGGGATGATGCTGCCAAGAAGGAC GTCTTGTCTACTTACGACGCCTCTAAGCCGTGGAGTGAGATCAACTTCGA CCCCTTCAAGAAGGTGGGTGCTAGTGTTGGGTAGCACCTTGTTTTTCATT TTCGTCTTGCCTGGGCAATTGTCGCAAACGAGTTTCCTGCCAACCTCTTG TAGGACATCGACGAGTCCTCGAATATTTTATGAGTTAATGTGAAATGGTC TCGGTACATACTTCCTGCTGAACTCCATCCTGTGCCTAATCGAGGGTCTG CTCGTTTTATTGTGTGTGTAGCTTGGTGGATTTAGGACTCCCGTTCCTTT GGACTCAAGGGAACATGCGTTCTTGAGTAAGAGAGTTAATTGTTGTGATT GCGTTTATGTGGATACGTAGTTGAAAAGGTTCATGGTAATGTAGGATTTT GCTGTGTAGGGTGCGGTAGGGTTCGGGTGGTTTACTGATTCGTAATTTGC TAGGAATAACCCTTTTGGGCTATGTTGAACATCTTACTGATGTTGGATTG GACACAACTCCGTTGCTCTACTTGATGTATCAACAGGATGCCAAGGGGAA TTCTTGCGACACCAGGGGCTTCTACCCCGGAGAGGGCAAGTACAAGGACC CCATCCGCCCCGCCGTCTCCTGGGCTGAGTACCAGGCCAAGCTCCAGGCT GACGGAAAATAA
back to top

Coding sequence (CDS) from alignment at C-tenellus_contig7569:2058..2869+

>mRNA_C-tenellus_contig7569.2.1 ID=mRNA_C-tenellus_contig7569.2.1|Name=mRNA_C-tenellus_contig7569.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=339bp|location=Sequence derived from alignment at C-tenellus_contig7569:2058..2869+ (Choristocarpus tenellus KU2346)
ATGAAGACATCTTTCGCTCTATGCTGCATGGCCGTGGCCGCCGCTGGCGT
GTCCGGCTTCGTCGTGCCACCATCCGGTGCTGTGCGTGCCCCCGCTCTGC
TGGGTGGCAAGTACGATGGCCAGGTGTGGGATGATGCTGCCAAGAAGGAC
GTCTTGTCTACTTACGACGCCTCTAAGCCGTGGAGTGAGATCAACTTCGA
CCCCTTCAAGAAGGATGCCAAGGGGAATTCTTGCGACACCAGGGGCTTCT
ACCCCGGAGAGGGCAAGTACAAGGACCCCATCCGCCCCGCCGTCTCCTGG
GCTGAGTACCAGGCCAAGCTCCAGGCTGACGGAAAATAA
back to top