mRNA_C-tenellus_contig7561.2.1 (mRNA) Choristocarpus tenellus KU2346
Overview
Homology
BLAST of mRNA_C-tenellus_contig7561.2.1 vs. uniprot
Match: A0A6H5K8T1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8T1_9PHAE) HSP 1 Score: 180 bits (456), Expect = 3.220e-47 Identity = 109/265 (41.13%), Postives = 140/265 (52.83%), Query Frame = 3 Query: 282 VQSRDFLFLDVEWLSQVLKPILDHKLGGIPFESAEMETGRYDLVERGILRRNFALHLWSPFMKMEEHIHDREAMIRGLFDVLIKLGIVLPTQWGP---ESDKRASTAQK----VSNMLVIMRLPTKCPETVRDKLRRFEEALGDNKVAIQWHFDSAGSPYGMVERLIAFCHVLGEVWESGCWRYG-VLLTGDSHAV-------------LVKYDGDRHLLTVTVFGLKVDLLMWGVLRFVASAVLRLSKDWSGVLWSASLQCPNH 1013 V D +FLDV WLS+ L PIL HKL PFE+ + R DL GILRR FALH+W + E + + E + LF VLIKLG+ LP SD+ TA ++MLVIMRL C E R + ++V ++W FD AG PYG++ERLIA CHVLGEV CWRYG V + D V + Y+ + T VFG +W +R+VASA++ LSK+W GVLW+ L C H Sbjct: 370 VDGGDGIFLDVLWLSKCLSPILSHKLKNQPFENRWLWM-RDDLAGDGILRREFALHIWRE--SVGEVVMESEEVAEALFSVLIKLGVALPMGRRTLLAHSDRSTPTAPSDVSGSNDMLVIMRLSETCNEHQRTLFDGLASKMPRDRVTLKWEFDKAGPPYGLIERLIASCHVLGEVETGACWRYGAVFQSHDMRFVEGRNVRFYKIALSMTSYNESERVFTAKVFGPLDSERVWVAIRYVASAMINLSKEWPGVLWTGWLDCEKH 631
BLAST of mRNA_C-tenellus_contig7561.2.1 vs. uniprot
Match: A0A6H5JW02_9PHAE (Roc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW02_9PHAE) HSP 1 Score: 169 bits (428), Expect = 3.550e-43 Identity = 109/267 (40.82%), Postives = 145/267 (54.31%), Query Frame = 3 Query: 282 VQSRDFLFLDVEWLSQVLKPILDHKLGGIPFESAEMETGRYDLVERGILRRNFALHLWSPFMKMEEHIHDREAMIRGLFDVLIKLGIVLPTQWG---PESDKRASTAQ---KVSNMLVIMRLPTKC------PETVRDKLRRFEEALGDNKVAIQWHFDSAGSPYGMVERLIAFCHVLGEVWESGCWRYGVLL------TGDS----HAVLVKYDG----DRHLLTVTVFGLKVDLLMWGVLRFVASAVLRLSKDWSGVLWSASLQC 1004 V + D +FLDV WLS LKPILDHKL F R +LV GILR FA HLWS M+ I E ++ L V++ LG+ LP + P S + +T + +MLVIMRLP C E + D++RR D +V + W FDSAG PYG+VER+IA CH +G V CWRYG + T D + +V+YD +R +L++ +FG D +W LR+VAS+V+ +SKDW GVLW QC Sbjct: 521 VANGDGVFLDVVWLSTALKPILDHKLVHKVFPQ-HFAGMRNELVHNGILRIAFAEHLWSDVME----ITVPEEVLDALCRVIVNLGVALPLEPASLLPGSGRALATGRPNISRQDMLVIMRLPETCGAEHELQELISDQMRRHS----DREVTLMWRFDSAGPPYGLVERVIASCHAVGVVEMGLCWRYGAVFQSRAMATSDGSDRLYTFVVRYDSAVGNERRILSMRMFGPLQDNRVWAALRWVASSVVNISKDWPGVLWEGWPQC 778
BLAST of mRNA_C-tenellus_contig7561.2.1 vs. uniprot
Match: D8LF46_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF46_ECTSI) HSP 1 Score: 87.8 bits (216), Expect = 2.730e-15 Identity = 75/272 (27.57%), Postives = 119/272 (43.75%), Query Frame = 3 Query: 258 VMDASRQIVQSRDFLFLDVEWLSQVLKPILDHKLGGIPFESAEMETGRYDLVERGILRRNFALHLWSPF-----MKMEEHIHDREA-------MIRGLFDVLIKLGIVLPTQWGPESDKRASTAQKVSNMLVIMRLPTKCPETVRDKLRRFEEALGDNKVAIQWHFDSAGSPYGMVERLIAFCHVLGEVWESGCWRYGVLLTGDS--------HAVLVKYDGDRHLLTVTVFGLKVDLLMWGVLRFVASAVLRLSKDWSGVLWSASLQCPNH 1013 + + +V+ F+FLDV WLS++LKP+L+HK GR L + G R LH S +K E + R A + + L+ +G+ P + P++ ++V++RL PE+V + + F + + W G P G +E+++ C LG+V WRYGVL+ G AV+V+Y + LT +FG W L +V SAV + D+ G+ W L+CP H Sbjct: 727 IREFDGSLVRHEKFVFLDVVWLSRILKPLLNHK-------DQRTFDGRVKLGDTGDTR--ITLHDQSDIDSWDRLKSEGVLEPRLANAMWPHGLSEYVLPTLVSVGLTFPLEGDPDA-----------GLVVLLRLEPHRPESVGEVIDTFC-SKHTPAFSASWEI-FLGVPPGAIEKVLTRCCGLGDVQTF--WRYGVLVHGGLGDLDGRGIFAVVVEYSSTDNELTAQIFGDISTPAPWVALSYVMSAVSLMLVDFPGLRWKGCLKCPQH 974
BLAST of mRNA_C-tenellus_contig7561.2.1 vs. uniprot
Match: D7FL98_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL98_ECTSI) HSP 1 Score: 84.0 bits (206), Expect = 5.180e-14 Identity = 70/276 (25.36%), Postives = 119/276 (43.12%), Query Frame = 3 Query: 258 VMDASRQIVQSRDFLFLDVEWLSQVLKPILDHK-----------LG--GIPFESAEMETGRYDLVERGILRRNFALHLWSPFMKMEEHIHDREAMIRGLFDVLIKLGIVLPTQWGPESDKRASTAQKVSNMLVIMRLPTKCPETVR---DKLRRFEEALGDNKVAIQWHFDSAGSPYGMVERLIAFCHVLGEVWESGCWRYGVLLTGD--------SHAVLVKYDGDRHLLTVTVFGLKVDLLMWGVLRFVASAVLRLSKDWSGVLWSASLQCPNH 1013 + + +V+ ++FLDV WL+Q+LKP+L+H+ LG GI + + L G+L + A LW + + + L LG+ P P ++V++RL K PE V D RR A+ ++++W G P G +E+++ C LG + WR+GVL+ G + A++V+Y D+ + + V+G W L F S + ++ G+ W A+L+CP H Sbjct: 610 IREHEGSLVRHETYVFLDVTWLAQILKPLLNHRDDEDPLRGDVSLGDTGITLKEDKHIASWNRLKGHGVLEPSLARVLWP------------DGLSNYVLPALDSLGLTYPLDDDP-----------AEGLVVLLRLDEKRPEDVGKELDDFRRDHTAV----LSVKWKV-FLGVPPGAIEKMLTRCCRLGTLRTF--WRFGVLVQGSLGGGIAARTFALVVEYSHDKCEVDMKVYGSISTAAPWAALSFGISVFQAMCSEFPGLRWRAALKCPQH 855
BLAST of mRNA_C-tenellus_contig7561.2.1 vs. uniprot
Match: D7FL89_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL89_ECTSI) HSP 1 Score: 82.4 bits (202), Expect = 1.670e-13 Identity = 70/276 (25.36%), Postives = 117/276 (42.39%), Query Frame = 3 Query: 258 VMDASRQIVQSRDFLFLDVEWLSQVLKPILDHK-----------LG--GIPFESAEMETGRYDLVERGILRRNFALHLWSPFMKMEEHIHDREAMIRGLFDVLIKLGIVLPTQWGPESDKRASTAQKVSNMLVIMRLPTKCPETVR---DKLRRFEEALGDNKVAIQWHFDSAGSPYGMVERLIAFCHVLGEVWESGCWRYGVLLTGD--------SHAVLVKYDGDRHLLTVTVFGLKVDLLMWGVLRFVASAVLRLSKDWSGVLWSASLQCPNH 1013 + + +V+ ++FLDV WL+Q+LKP+L+H+ LG GI + + L G+L A LW + + + L LG+ P P ++V++RL K PE V D RR A+ ++++W G P G +E+++ C LG + WR+GVL+ G + A+L++Y D + + V+G W L + S + ++ G+ W ASL+CP H Sbjct: 574 IREHEGSLVRHETYVFLDVTWLAQILKPLLNHRDDEDPLRGDVSLGDTGITLKEDKHIASWNRLKGHGVLEPELAGVLWP------------DGLSNYVLPTLDSLGLTYPLDDDP-----------AEGLVVLLRLDEKRPEDVGKELDDFRRDHTAV----LSVKWKI-FLGVPPGAIEKMLTRCCRLGTLRTF--WRFGVLVQGSLGGGMAAKTFALLIEYSHDTCEVDMEVYGSIRTAAPWAALSYGISVFQAMCSEFPGLRWRASLKCPQH 819
BLAST of mRNA_C-tenellus_contig7561.2.1 vs. uniprot
Match: A0A6H5KHF4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHF4_9PHAE) HSP 1 Score: 77.4 bits (189), Expect = 2.630e-12 Identity = 71/274 (25.91%), Postives = 118/274 (43.07%), Query Frame = 3 Query: 258 VMDASRQIVQSRDFLFLDVEWLSQVLKPILDHKLGGIPFESAEMETGRYDLVERG----ILRRNFALHLWSPFMKMEEHIHDREAMI---RGLFD----VLIKLGIVLPTQWGPESDKRASTAQKVSNMLVIMRLPTKCPETVRDKLRRFEEALGDN--KVAIQWHFDSAGSPYGMVERLIAFCHVLGEVWESGCWRYGVLLTGD---------SHAVLVKYDGDRHLLTVTVFGLKVDLLMWGVLRFVASAVLRLSKDWSGVLWSASLQCPNH 1013 + + +++ F+FLDV WLS++LKP+L+HK E G +L + G L + W +K E + R A + GL + L+ LG+ P E+D ++V++RL P V + F N + W G P G +E+++ C +G+V WR+GVL+ G AV+++Y + LT ++G K W L +V S+V + ++ G+ W L+CP H Sbjct: 73 IREFDGSLIRHETFVFLDVVWLSRILKPLLNHK-------DTETYEGFVNLGDNGDSCITLHDQVDIASWRR-LKSEGILEPRLAHVIWPAGLSEYVLPTLVSLGLTFPL----ENDD-------AGGLVVLLRLKPGRPARVGKVIDTF---CSQNIPVFSASWKI-FLGVPAGAMEKVLTRCCSIGDVQTF--WRFGVLVHGSFGDARDGSGDFAVVLEYSSTNNELTAQIYGNKSQPAPWAALSYVISSVRFVLLEFPGLRWRGLLKCPQH 321
BLAST of mRNA_C-tenellus_contig7561.2.1 vs. uniprot
Match: A0A6H5JYD1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYD1_9PHAE) HSP 1 Score: 73.6 bits (179), Expect = 1.180e-10 Identity = 67/273 (24.54%), Postives = 117/273 (42.86%), Query Frame = 3 Query: 258 VMDASRQIVQSRDFLFLDVEWLSQVLKPILDHK----------LGGIPFESAEMETGRYDLVERGILRRNFALHLWSPFMKMEEHIHDREAMIRGLFDVLIKLGIVLPTQWGPESDKRASTAQKVSNMLVIMRLPTKCPETVRDKLRRFEEALGDN--KVAIQWHFDSAGSPYGMVERLIAFCHVLGEVWESGCWRYGVLLTGD---------SHAVLVKYDGDRHLLTVTVFGLKVDLLMWGVLRFVASAVLRLSKDWSGVLWSASLQCPNH 1013 + + +++ F+FLDV WLS++LKP+L+HK LG ++ + +D V+ RR + + P + H+ + + L+ LG+ P E+D ++V++RL P V + F N + W G P G +E+++ C +G V WR+GVL+ G AV+++Y + LT ++G K W L +V S+V + ++ G+ W L+CP H Sbjct: 87 IREFDGSLIRHETFVFLDVVWLSRILKPLLNHKDQETFEGFVKLG----DNGDSCITLHDQVDIASWRRLKSEGILEPRLA---HVIWPAGLSEYVLPTLVSLGLTFPL----ENDD-------AGGLVVLLRLKPGRPARVGKVIDTF---CSQNIPVFSASWKI-FLGVPAGAMEKVLTRCCSIGGVQTF--WRFGVLVHGSFGDARDGSGDFAVVLEYSSINNELTAQIYGDKSQPAPWAALSYVISSVRFVLLEFPGLRWRGLLKCPQH 335 The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7561.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-tenellus_contig7561.2.1 >prot_C-tenellus_contig7561.2.1 ID=prot_C-tenellus_contig7561.2.1|Name=mRNA_C-tenellus_contig7561.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=251bp MDASRQIVQSRDFLFLDVEWLSQVLKPILDHKLGGIPFESAEMETGRYDLback to top mRNA from alignment at C-tenellus_contig7561:1060..2356+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-tenellus_contig7561.2.1 ID=mRNA_C-tenellus_contig7561.2.1|Name=mRNA_C-tenellus_contig7561.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1297bp|location=Sequence derived from alignment at C-tenellus_contig7561:1060..2356+ (Choristocarpus tenellus KU2346)back to top Coding sequence (CDS) from alignment at C-tenellus_contig7561:1060..2356+ >mRNA_C-tenellus_contig7561.2.1 ID=mRNA_C-tenellus_contig7561.2.1|Name=mRNA_C-tenellus_contig7561.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=753bp|location=Sequence derived from alignment at C-tenellus_contig7561:1060..2356+ (Choristocarpus tenellus KU2346)back to top |