mRNA_C-tenellus_contig755.3.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig755.3.1
Unique NamemRNA_C-tenellus_contig755.3.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig755.3.1 vs. uniprot
Match: F0XWE0_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XWE0_AURAN)

HSP 1 Score: 114 bits (285), Expect = 4.600e-27
Identity = 47/78 (60.26%), Postives = 58/78 (74.36%), Query Frame = 1 
Query:   13 VKTTSADSRYPLFNQASHCWYVFQKRSHQKFNEWVLCVKNADGDEDACKPHRQLAVSLCPNEWVEKWDEERDEGNFSG 246
            +KTT  D R+P  NQA+HCW      S  ++NEWVLC+K  DGDEDACKP RQ A+S+CP++W  KWDEER+EG FSG
Sbjct:    1 IKTTPPDKRFPTQNQANHCWNRAAAAS-DRYNEWVLCLKKTDGDEDACKPMRQFALSICPDDWYNKWDEEREEGTFSG 77
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BLAST of mRNA_C-tenellus_contig755.3.1 vs. uniprot
Match: A0A7S2SC35_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SC35_9STRA)

HSP 1 Score: 115 bits (287), Expect = 5.190e-27
Identity = 51/83 (61.45%), Postives = 61/83 (73.49%), Query Frame = 1 
Query:    1 MVEKVKTTSADSRYPLFNQASHCWYVFQKRSHQKFNEWVLCVKNADGDEDACKPHRQLAVSLCPNEWVEKWDEERDEGNFSGI 249
            +V  +KTT AD R+P  NQA+HCW         ++NEWV+C+K   GDEDACK  RQLAVSLCP EWVEKWDEER+EG F+GI
Sbjct:   22 IVNFMKTTQADKRFPNQNQANHCW--------NRYNEWVMCLKGTQGDEDACKGVRQLAVSLCPCEWVEKWDEEREEGAFAGI 96
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BLAST of mRNA_C-tenellus_contig755.3.1 vs. uniprot
Match: A0A024TKH7_9STRA (Uncharacterized protein n=4 Tax=Aphanomyces TaxID=100860 RepID=A0A024TKH7_9STRA)

HSP 1 Score: 110 bits (274), Expect = 1.590e-25
Identity = 46/79 (58.23%), Postives = 53/79 (67.09%), Query Frame = 1 
Query:   13 VKTTSADSRYPLFNQASHCWYVFQKRSHQKFNEWVLCVKNADGDEDACKPHRQLAVSLCPNEWVEKWDEERDEGNFSGI 249
            +KTT  D R+P  NQ  HCW         ++NEW LC+K  D DEDACK HRQ A SLCP  W+EKWD ERDEGNFSG+
Sbjct:    7 LKTTPVDPRFPTQNQTQHCWV--------RYNEWALCLKKNDDDEDACKKHRQYAKSLCPGSWLEKWDTERDEGNFSGV 77
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BLAST of mRNA_C-tenellus_contig755.3.1 vs. uniprot
Match: A0A8J2WWH0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WWH0_9STRA)

HSP 1 Score: 109 bits (273), Expect = 7.220e-25
Identity = 44/83 (53.01%), Postives = 60/83 (72.29%), Query Frame = 1 
Query:    1 MVEKVKTTSADSRYPLFNQASHCWYVFQKRSHQKFNEWVLCVKNADGDEDACKPHRQLAVSLCPNEWVEKWDEERDEGNFSGI 249
            ++  +KTT  D R+P  NQASHCW         ++NE+V+C+K  + DEDACKP RQLA+S+CP++W  KWDEER+EG FSG+
Sbjct:   35 LIPHIKTTPYDKRFPSTNQASHCW--------NRYNEYVMCLKKTESDEDACKPMRQLALSICPDDWWNKWDEEREEGTFSGV 109
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BLAST of mRNA_C-tenellus_contig755.3.1 vs. uniprot
Match: A0A662X5P5_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X5P5_9STRA)

HSP 1 Score: 105 bits (263), Expect = 5.600e-24
Identity = 43/80 (53.75%), Postives = 58/80 (72.50%), Query Frame = 1 
Query:   10 KVKTTSADSRYPLFNQASHCWYVFQKRSHQKFNEWVLCVKNADGDEDACKPHRQLAVSLCPNEWVEKWDEERDEGNFSGI 249
            K+KTT  D R+P  NQ+ HCW         ++NE+VLC+KN DGD+DACK + Q A SLCPN W+++WDE+R+EG FSG+
Sbjct:    6 KLKTTPLDPRFPNQNQSQHCW--------TRYNEYVLCLKNNDGDDDACKTYFQYAASLCPNSWMDRWDEQREEGTFSGV 77
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BLAST of mRNA_C-tenellus_contig755.3.1 vs. uniprot
Match: A0A0P1ABL2_PLAHL (Protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1ABL2_PLAHL)

HSP 1 Score: 105 bits (263), Expect = 5.930e-24
Identity = 46/82 (56.10%), Postives = 58/82 (70.73%), Query Frame = 1 
Query:    1 MVEKVKTTSADSRYPLFNQASHCWYVFQKRSHQKFNEWVLCVKNADGDEDACKPHRQLAVSLCPNEWVEKWDEERDEGNFSG 246
            M  K+KTT  D R+P  NQA HCW         ++NE+VLC+KN DGDEDACK + Q A+SLCPN WVE+W+E+R+EG F G
Sbjct:    1 MEGKLKTTPLDPRFPNTNQAQHCW--------TRYNEFVLCLKNNDGDEDACKTYYQNALSLCPNSWVERWNEQREEGTFQG 74
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BLAST of mRNA_C-tenellus_contig755.3.1 vs. uniprot
Match: A0A7S2D0D8_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2D0D8_9STRA)

HSP 1 Score: 105 bits (262), Expect = 1.250e-23
Identity = 41/83 (49.40%), Postives = 60/83 (72.29%), Query Frame = 1 
Query:    1 MVEKVKTTSADSRYPLFNQASHCWYVFQKRSHQKFNEWVLCVKNADGDEDACKPHRQLAVSLCPNEWVEKWDEERDEGNFSGI 249
            +V+ +KT+ +D R+P  NQA+HCW         ++NEWV+C+K   GD DACK  RQ+A+S+CP +W  KWDEER+EG+F+G+
Sbjct:   19 LVKMIKTSPSDKRFPSQNQANHCW--------NRYNEWVMCLKGTAGDADACKGVRQMALSICPEDWSNKWDEEREEGSFAGV 93
[Close]
BLAST of mRNA_C-tenellus_contig755.3.1 vs. uniprot
Match: A0A485L9N9_9STRA (Aste57867_18289 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L9N9_9STRA)

HSP 1 Score: 104 bits (260), Expect = 1.320e-23
Identity = 44/82 (53.66%), Postives = 51/82 (62.20%), Query Frame = 1 
Query:    4 VEKVKTTSADSRYPLFNQASHCWYVFQKRSHQKFNEWVLCVKNADGDEDACKPHRQLAVSLCPNEWVEKWDEERDEGNFSGI 249
            +E  KTT  D R+P  NQ  HCW         ++NEW LC+K    DEDACK  R  A SLCP  W+EKWD ERDEGNFSG+
Sbjct:    4 IEDFKTTPVDPRFPTQNQTQHCWV--------RYNEWALCLKQNGDDEDACKKQRSYARSLCPGSWIEKWDTERDEGNFSGV 77
[Close]
BLAST of mRNA_C-tenellus_contig755.3.1 vs. uniprot
Match: A0A1V9Z0G4_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Z0G4_9STRA)

HSP 1 Score: 104 bits (260), Expect = 1.320e-23
Identity = 44/81 (54.32%), Postives = 51/81 (62.96%), Query Frame = 1 
Query:    7 EKVKTTSADSRYPLFNQASHCWYVFQKRSHQKFNEWVLCVKNADGDEDACKPHRQLAVSLCPNEWVEKWDEERDEGNFSGI 249
            E +KTT  D R+P  NQ  HCW         ++NEW LC+K  D DED CK  R  A SLCP  W+EKWD ERDEGNFSG+
Sbjct:    5 EDLKTTPVDPRFPTQNQTQHCW--------TRYNEWALCLKKNDDDEDVCKSARSYAKSLCPGSWIEKWDGERDEGNFSGV 77
[Close]
BLAST of mRNA_C-tenellus_contig755.3.1 vs. uniprot
Match: A0A067CJ90_SAPPC (Uncharacterized protein n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CJ90_SAPPC)

HSP 1 Score: 104 bits (260), Expect = 1.320e-23
Identity = 43/81 (53.09%), Postives = 53/81 (65.43%), Query Frame = 1 
Query:    7 EKVKTTSADSRYPLFNQASHCWYVFQKRSHQKFNEWVLCVKNADGDEDACKPHRQLAVSLCPNEWVEKWDEERDEGNFSGI 249
            E +KTT  D R+P  NQ  HCW         ++NEW LC+K  D DEDACK  RQ A ++CP  W+EKWD ERD+GNFSG+
Sbjct:    5 EDLKTTPVDPRFPTQNQTQHCW--------TRYNEWALCLKKNDDDEDACKQTRQYAKAICPGSWMEKWDTERDDGNFSGV 77
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig755.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
F0XWE0_AURAN4.600e-2760.26Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
A0A7S2SC35_9STRA5.190e-2761.45Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A024TKH7_9STRA1.590e-2558.23Uncharacterized protein n=4 Tax=Aphanomyces TaxID=... [more]
A0A8J2WWH0_9STRA7.220e-2553.01Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A662X5P5_9STRA5.600e-2453.75Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
A0A0P1ABL2_PLAHL5.930e-2456.10Protein n=1 Tax=Plasmopara halstedii TaxID=4781 Re... [more]
A0A7S2D0D8_9STRA1.250e-2349.40Hypothetical protein n=2 Tax=Dictyocha speculum Ta... [more]
A0A485L9N9_9STRA1.320e-2353.66Aste57867_18289 protein n=1 Tax=Aphanomyces stella... [more]
A0A1V9Z0G4_9STRA1.320e-2354.32Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A067CJ90_SAPPC1.320e-2353.09Uncharacterized protein n=3 Tax=Saprolegniaceae Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig755contigC-tenellus_contig755:10253..12716 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog44056.XP_009032591.1
Preferred nameCOX6B1
PFAMsCOX6B
Model size1744
Max annot lvl2759|Eukaryota
KEGG koko:K02267,ko:K08008,ko:K17347
KEGG TC3.D.4.11,3.D.4.8,5.B.1.1.3
KEGG Pathwayko00190,ko01100,ko04260,ko04380,ko04714,ko04932,ko04933,ko05010,ko05012,ko05016,ko05418,map00190,map01100,map04260,map04380,map04714,map04932,map04933,map05010,map05012,map05016,map05418
KEGG ModuleM00154
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004129,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005751,GO:0005758,GO:0006091,GO:0006810,GO:0006811,GO:0006812,GO:0006996,GO:0007005,GO:0008150,GO:0008152,GO:0008324,GO:0008535,GO:0009055,GO:0009987,GO:0015002,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015672,GO:0016020,GO:0016021,GO:0016043,GO:0016491,GO:0016675,GO:0016676,GO:0017004,GO:0019866,GO:0022607,GO:0022857,GO:0022890,GO:0022900,GO:0030061,GO:0031090,GO:0031224,GO:0031966,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0032991,GO:0033108,GO:0033617,GO:0034220,GO:0034622,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045277,GO:0051179,GO:0051234,GO:0055085,GO:0055114,GO:0065003,GO:0070013,GO:0070069,GO:0070469,GO:0071840,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:1902600
Exons3
Evalue4.43e-32
EggNOG OGsKOG3057@1|root,KOG3057@2759|Eukaryota
Ec32 ortholog descriptioncytochrome c oxidase subunit 6b
Ec32 orthologEc-21_005020.1
Descriptionplasma membrane ATP synthesis coupled electron transport
Cds size255
COG categoryO
BRITEko00000,ko00001,ko00002,ko04131,ko04147
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790043.822392-UTR-C-tenellus_contig755:10252..117411680790043.822392-UTR-C-tenellus_contig755:10252..11741Choristocarpus tenellus KU2346UTRC-tenellus_contig755 10253..11741 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790043.8399992-CDS-C-tenellus_contig755:11741..117951680790043.8399992-CDS-C-tenellus_contig755:11741..11795Choristocarpus tenellus KU2346CDSC-tenellus_contig755 11742..11795 -
1680790043.8519897-CDS-C-tenellus_contig755:12097..121961680790043.8519897-CDS-C-tenellus_contig755:12097..12196Choristocarpus tenellus KU2346CDSC-tenellus_contig755 12098..12196 -
1680790043.8618772-CDS-C-tenellus_contig755:12614..127161680790043.8618772-CDS-C-tenellus_contig755:12614..12716Choristocarpus tenellus KU2346CDSC-tenellus_contig755 12615..12716 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig755.3.1prot_C-tenellus_contig755.3.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig755 11742..12716 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig755.3.1

>prot_C-tenellus_contig755.3.1 ID=prot_C-tenellus_contig755.3.1|Name=mRNA_C-tenellus_contig755.3.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=85bp
MVEKVKTTSADSRYPLFNQASHCWYVFQKRSHQKFNEWVLCVKNADGDED
ACKPHRQLAVSLCPNEWVEKWDEERDEGNFSGIH*
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mRNA from alignment at C-tenellus_contig755:10253..12716-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig755.3.1 ID=mRNA_C-tenellus_contig755.3.1|Name=mRNA_C-tenellus_contig755.3.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2464bp|location=Sequence derived from alignment at C-tenellus_contig755:10253..12716- (Choristocarpus tenellus KU2346)
ATGGTTGAGAAGGTCAAGACAACCTCAGCGGACAGCCGGTACCCGCTTTT
CAACCAAGCCAGCCACTGCTGGTACGTGTTCCAGAAGAGATCACATCAAA
AAGTTGCGGGATTTATATTGCGCTGGTCTGTTCGACGTTTGGACTTCTTA
TTGTTTCCGATATATCGATTATCATACTAGGAAGGTCGAAAAAGAGGCCT
TGGTATATTTGGAAGGGGAAAGGTAGTTGGCCAGGGTCTTCCTTTGTCCT
TGAAGCTTGCTCAACATGATTTCGGTGCAATTCTCTGTGCCTATGCTTTC
ATCATGGCGGTCTCTTCTTTCTTTTCATTTGCAGCAAATTGCGTTAACCA
TTGAAGGTATATTAAACATCCACTCCTAAAGAGAATTTTGGAGTGGTGTA
TGCAGTGAGACGGAGATCCTGTTTGCTTTTCAATACTTCCTCCCATGCGA
TCCTTTATTCGAGGTTAAACTCGCATACTTTGTCGATGTATTTTGTCTCG
CTTTCGACCTCAGGGGAAAGTTTAACGAGTGGGTTCTCTGTGTGAAGAAC
GCTGACGGTGACGAGGACGCCTGCAAGCCTCACCGGCAGCTTGCCGTATC
TCTCTGTCCTAACGAATGGGTGAGTTGATTGTCCTGGATCGGCTCATATT
TTCCCCGAAGATATTGTGCTGTTCGTAGTCTTGTTTTACATAGCGTTCAA
ACAAGAGCTTAGGTGTGTCATCTTTCCTGTAAATTTGTTTCGAACGCTCT
CGACGTCCTAACCCAATGCCGCCAAGTTTTCGGATGAGCAAGTTTGTTAT
CCTTCAGTCAGGGATTTGCTCATCAATCCTCTCTTACCCTCACGCCCCCA
ACGCTTGTGCTGACACCCTCCATGCACATTCTTGCTCTCATCATGGTGTC
CCCTTTCGTCCACGCCGCCAGGTCGAGAAATGGGATGAGGAACGGGATGA
AGGAAACTTCTCCGGCATTCACTGAGAAGCCGTGCTTAATTAGTATTACC
ATTGTGTCAGTTGGAACTGCTGTTATGTATGGGGGTGGATGCATGCACAG
TCCAAAATCCTTGGGAGTCCCAGCAGTGAAGGGGGATCTGTTGAATTGCT
CGTTTCTATCCTACCACACATCAGGCCTGTCCAGCTTCCGTGGCATGTAC
CAAATTCTGGCTGGTCTATGCTTTACCGAGGATGTTCCAGGAAGTGATAT
TGTTGGTACAGGCATCTAGCACTGTGTGTGATGCTGTTGTAGCTGGTCTT
GTGACTTACTGCAAGACTTTCAGGCTTTGATGCGAAGATTTTTATTGAGT
CTCCATTTAATAGTAGAGTGAAAAAGAGATGTAGGGTGCCTACTGCAGAG
GCTCTCCTTATGGTTGGTTGTCTGTAGGTGGTTGAGAGAAATTCAAGGGA
AATGGAGAGATTGAAGGGGTGAGGTGTGACTGGGTTCTTAGTCTTCAAAA
GAAATTTGAATTTCTTTGTGAATCATGGATTTTGGGAGGGGTAGGGGATT
GGCTACAGATCAAGGCATCTCTTACTGCAGGTGGGGCAGGGTCTGCAAGA
TGGCATTAGCATGACTGAAGTACTGGAAGGAATGTTTTTATCGGGTCTTT
GGTAACTAACTCATCCGGTTTTATCATCTACCACTTCACTGCTTATCAAT
GGAAAAAGGCTGGTCTGCTGCCCTAGGTTACAGGTTGATCTCATTTGTTG
TTTCCTTAATCCTCTTGTCTGTTAGAACGCATATTTGTGGAATGCCCTTG
ATGTGCACCCCCTTAGCAATGCCTCTTCTGTTGTGTGAAACTTTCTCCAT
TGTACGAAGTACAGTGTATTGTGCCTGGTGAATCTGTGATTCAACCTTGG
ATACCTGCGGTGTAGTGTTTTTGGTGAGGAGCTGCTTGTGCTGCGCAAAT
GTCTTTGAATGGGCCAAGCCGCACTATGGAAGGTGCAAATCAATCTGCCT
TTGGCCACTTGACTGCCCCCTTTATCTATAGTGCACACCTTGCCAAGGAG
CTAGCGTAATCATTGATTTTCCTCTCATGCCCCCTGTAGTTCTCTGCTCA
GTATATAGTCCACTTTATTTTCCATGTGATAGTTGTGACGCCTGTACAAT
GGCTTTTGTTGGATGCTATGAGGTCAATTAGTGGGTCCGAAGTATTCTCC
ATGTGTAACTGGTATGCAGTGCTTGGCACTTTTTTCCTCCCTCTCAAGCG
CGCATCCAGTAAAACGTTCGTGGGTGCCAGCTTCTAGCGTAGATATTTCT
AATATTTTATTATTGTTGTGATAACAAGAGGGTTCACATCACAGGAATTT
TAAGTATGTTTACCCGTAGGTGAGAAAGAACTACTTGTCCTTATTTTCAA
CTGTTGTGTGAACAGTAGGAAGGGGTGTGTCTAGATATATGTAAACTTCA
GAATACGACAGGTAAAATGGAGGTGGTAGTTGGCATCAAGCTCGCACTAC
TCCAAAATCCCTAC
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Coding sequence (CDS) from alignment at C-tenellus_contig755:10253..12716-

>mRNA_C-tenellus_contig755.3.1 ID=mRNA_C-tenellus_contig755.3.1|Name=mRNA_C-tenellus_contig755.3.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=255bp|location=Sequence derived from alignment at C-tenellus_contig755:10253..12716- (Choristocarpus tenellus KU2346)
ATGGTTGAGAAGGTCAAGACAACCTCAGCGGACAGCCGGTACCCGCTTTT
CAACCAAGCCAGCCACTGCTGGTACGTGTTCCAGAAGAGATCACATCAAA
AATTTAACGAGTGGGTTCTCTGTGTGAAGAACGCTGACGGTGACGAGGAC
GCCTGCAAGCCTCACCGGCAGCTTGCCGTATCTCTCTGTCCTAACGAATG
GGTCGAGAAATGGGATGAGGAACGGGATGAAGGAAACTTCTCCGGCATTC
ACTGA
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