mRNA_C-tenellus_contig7545.1.2 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7545.1.2
Unique NamemRNA_C-tenellus_contig7545.1.2
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7545.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7545contigC-tenellus_contig7545:12..3405 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size2657
Hectar predicted targeting categoryother localisation
Exons2
Cds size2202
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790043.6156785-CDS-C-tenellus_contig7545:11..20661680790043.6156785-CDS-C-tenellus_contig7545:11..2066Choristocarpus tenellus KU2346CDSC-tenellus_contig7545 12..2066 -
1680790043.6270514-CDS-C-tenellus_contig7545:2805..29521680790043.6270514-CDS-C-tenellus_contig7545:2805..2952Choristocarpus tenellus KU2346CDSC-tenellus_contig7545 2806..2952 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790043.6386194-UTR-C-tenellus_contig7545:2952..34051680790043.6386194-UTR-C-tenellus_contig7545:2952..3405Choristocarpus tenellus KU2346UTRC-tenellus_contig7545 2953..3405 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7545.1.2prot_C-tenellus_contig7545.1.2Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7545 12..2952 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7545.1.2

>prot_C-tenellus_contig7545.1.2 ID=prot_C-tenellus_contig7545.1.2|Name=mRNA_C-tenellus_contig7545.1.2|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=734bp
MARTSVENNSASSSVIGGCHPSEEIAIHHVAAGNMQRSHISPEEYYKGRI
QSGLLGKVEGDRRVTLTHPNTLQMAPHTFPLFYHQHHAHRAQMYYGVPRA
QTARAQQQQQQQLHHQQSPLLAYYQYSGASSPSSVPTISPGPQPVTTGHT
PHSSYHPCYGYINLEALEHRAPSAQMEWGVPPTSNARIPSSKATNAPSVS
MLVPPTCAGSTEAFRGGKVSLRGNNVSSGEDDNTNSRGGNSSLGDRLSPL
STKAKAAGAVTTSTSKATIDRKRKLVNHVCQPTLATSLPTAGSSSSSSSS
ICALSSSLPSTPTSTTGAAVAVATAFRQVGGGTAAFTPPYPSAYRNRAVS
RRPTSRRKTEHAHVDMKGSSAACTQLAQPGSPKASAVPQSTSHMTQVCTS
SSSVLVQAPTPTQGKDSAQAPVLECSEAWTTASAEPHVTGPDVKLKTEKA
RSPFGASKDSGHGGLHLLVEAIDLNNSCTGAGGGAQGLSEGEEADCQMQQ
ESNQGPPQVRCQSSVGPSSSSSVSTSSSSFATSVVKIEPKPQALPESVAA
AIVATMALRSDPVSAKKRSASSDEGSLISGAQKVTVSDAGGGRSRGNSTG
GQATQQPLAPLGRLWGAHLPVTSSAYTTTVHPRSAAAPGSMAAAVMTTVP
SGGKMLVGRGNGLFPTMAHPIFSHLTGGFSSQEMLAKAGGNSLDQTGIAL
TAEQSVCREGGLGPWQVQGHCHKQGQGTLGWEAH
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mRNA from alignment at C-tenellus_contig7545:12..3405-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7545.1.2 ID=mRNA_C-tenellus_contig7545.1.2|Name=mRNA_C-tenellus_contig7545.1.2|organism=Choristocarpus tenellus KU2346|type=mRNA|length=3394bp|location=Sequence derived from alignment at C-tenellus_contig7545:12..3405- (Choristocarpus tenellus KU2346)
GTTTCTGTAAAAACCATTGTACTGGTCGGTTATCTGATTGGTCGATGAAG
CACCCCAAAACGGATCTGGTCGTGTCTTTAGCTAGAGAAGTGAAAGCAGG
TGTCACATCAAGTACAAAATGAAAGGAAAGGAACTCACCACTATTCCGCA
TTCCCACAAGTGTGCATTTTACGTTTTACGGTAGTGGTAAGAACTACCCC
TTCGTGTAGCAACGTCTTGCACATTGCGGAGGGTTTTGCAAGGATTTTTC
TCTGAAACCTAGGGGGAGAACACAGACCTACCCCTATTCATATGTCATTC
ATCCCAGGAGTGGTTGTCTAGTGGATTGGCGCTTTCTTTCTCCAGGCATT
CATCAGGAAAGATCCTAGAGTGCATCTAATCTCCCCTCTTAAGTACGATA
CGTGGTCGTTCAAGGTGGGGTGGATAGGGTGTGACTCTTTGGTCGAATTC
TCCATGGCCCGCACGTCAGTTGAGAACAATTCCGCTTCCTCTTCGGTCAT
CGGAGGATGTCATCCGTCGGAGGAGATTGCGATTCATCACGTTGCTGCTG
GGAACATGCAGCGGTCCCACATCTCTCCAGAAGAATACTACAAGGGAAGG
GTATGTGATTTGTACCTGTTGACCTGATTACTCCCTACTACTCTTTCCCA
TGCAGGTCCACTAATCCTTAGCGCAAATGAGCCCTGGGGCTTGCTCTGCG
TGCACCTTATTGAAGTTTCTTTTCATTTGGGGTCATCGTAGGTCCACCAT
TTCTGACAATGGCCACAGCGCTTGTCAGCCTCTCCTCTCTGGTTAATTAT
CCCGAATTTCAACATGTCGATGCAATCTCTGTGACATTCTCTTTTGTTGA
GGACCCAATTGTTTTTCAGTGTCATACAAATGGTGCATGGAAACAATGGT
GGAGGTGATGGTGTAGTCAGTCTTCGGCACACCTGATCGACGATGGTTGT
TACTCTGGACGTATTCTTGTTGTCGCATTGTGAGCACCTCTGTCTCAATT
GTATTACAGCTGATATGTCCACCTTGCCCACTCACTTGTTAAGGCTTACT
CGATTAAGATTCATCCACACAAGAATGGCACACTTCCGTCCAAACTTCTC
CCCCAAAATCTAGTGCTGCAGGTGCAGTAGGTAGTGCTATATTAGCAAAG
CATACTCTTTGAACGCATGCTATTAACTGGACATTGGAAAAGTCCCCTCT
TGTCTTGGAAGGTATTGACAAGTCACTCTTGGCCTAGTAACTTGTGATGC
TTCTACAGTCTCAGCGTATTTCCCCAAGTTGGCTCATCTCACCCTTCCCA
CCTGTAACCTTTTCTACCCCTGCTCCCTATATGACACAGATTCAATCTGG
CCTGCTTGGTAAGGTGGAAGGTGATCGGCGCGTGACATTGACGCACCCGA
ATACTTTGCAGATGGCACCTCACACCTTCCCTCTCTTCTACCACCAACAC
CATGCACACCGCGCTCAGATGTACTATGGCGTGCCTCGCGCCCAGACAGC
TCGCGCCCAGCAGCAACAACAACAGCAACTCCACCACCAGCAGTCGCCTT
TGCTTGCATACTATCAGTATTCTGGGGCCTCAAGTCCCTCTTCAGTGCCC
ACCATTTCCCCTGGACCACAGCCTGTCACTACTGGACACACGCCACATTC
ATCCTACCATCCGTGCTATGGATACATTAATTTGGAAGCCTTGGAACATC
GTGCTCCGTCTGCTCAAATGGAATGGGGTGTACCACCCACCTCAAACGCC
CGCATTCCGTCCTCAAAGGCAACTAATGCTCCATCTGTGTCGATGTTGGT
GCCTCCTACTTGTGCTGGTAGCACGGAGGCGTTCAGAGGTGGGAAAGTCT
CACTTCGTGGGAACAATGTCAGCAGCGGGGAAGATGACAACACCAATTCA
AGAGGCGGTAATAGTTCATTGGGTGATCGGCTCTCTCCACTCTCAACCAA
AGCGAAGGCGGCGGGTGCTGTGACAACCTCAACTTCAAAAGCCACTATTG
ATCGCAAGCGAAAGCTGGTGAATCATGTGTGCCAACCAACTCTGGCAACT
TCTCTCCCCACTGCTGGGTCGTCTTCCTCCTCTTCCTCTTCTATATGCGC
TCTGTCTTCATCATTGCCTTCAACTCCAACCTCAACAACAGGTGCCGCTG
TAGCAGTGGCAACGGCCTTCAGGCAGGTAGGAGGGGGTACTGCTGCCTTC
ACCCCCCCCTACCCCTCTGCTTACAGAAACAGGGCAGTAAGTAGGCGACC
CACGAGCAGGAGGAAGACTGAACATGCCCATGTGGACATGAAAGGGAGCT
CGGCTGCATGCACTCAGTTGGCGCAACCTGGATCACCAAAGGCATCTGCT
GTCCCGCAGTCAACCTCTCACATGACCCAGGTGTGCACATCTTCATCTTC
AGTCCTTGTGCAGGCCCCAACCCCAACCCAAGGTAAAGATTCAGCTCAAG
CGCCAGTTCTGGAATGCTCAGAGGCCTGGACCACTGCTTCAGCAGAGCCC
CATGTAACAGGCCCAGATGTGAAGTTAAAGACGGAGAAAGCTCGATCACC
CTTTGGTGCCTCAAAGGACTCAGGCCATGGGGGCTTACACCTATTGGTAG
AAGCTATTGACCTAAACAACAGTTGCACTGGTGCTGGAGGAGGTGCACAG
GGGTTGAGTGAGGGGGAGGAGGCAGACTGTCAAATGCAACAAGAGTCGAA
TCAGGGGCCTCCCCAAGTCAGGTGCCAGTCATCAGTGGGGCCAAGCTCAT
CCTCCTCAGTATCCACTTCCTCTTCTTCCTTTGCTACATCTGTAGTCAAG
ATTGAGCCTAAGCCACAAGCTTTGCCAGAGTCGGTTGCTGCTGCCATTGT
AGCCACCATGGCCTTAAGGTCAGATCCAGTGTCTGCTAAGAAGAGATCAG
CGAGTAGCGATGAAGGGAGCTTGATATCTGGAGCACAAAAGGTGACTGTG
AGTGATGCAGGTGGGGGTAGGAGTAGGGGAAACAGTACAGGAGGACAAGC
GACCCAGCAGCCTTTGGCACCACTGGGTCGACTCTGGGGAGCCCATCTGC
CTGTCACCAGCTCAGCTTACACTACCACTGTCCATCCAAGATCAGCTGCA
GCCCCTGGATCTATGGCTGCGGCAGTTATGACCACAGTGCCATCAGGAGG
CAAGATGCTTGTGGGCAGGGGAAATGGCCTGTTTCCCACCATGGCCCACC
CAATCTTCTCCCATCTAACTGGAGGGTTTTCTAGTCAGGAGATGTTGGCC
AAAGCTGGAGGGAACTCCCTTGACCAAACAGGGATAGCCTTGACAGCCGA
GCAGAGTGTGTGCAGAGAGGGGGGGTTGGGCCCTTGGCAGGTGCAGGGGC
ATTGCCACAAGCAAGGGCAGGGGACTCTTGGGTGGGAAGCACAT
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Coding sequence (CDS) from alignment at C-tenellus_contig7545:12..3405-

>mRNA_C-tenellus_contig7545.1.2 ID=mRNA_C-tenellus_contig7545.1.2|Name=mRNA_C-tenellus_contig7545.1.2|organism=Choristocarpus tenellus KU2346|type=CDS|length=2202bp|location=Sequence derived from alignment at C-tenellus_contig7545:12..3405- (Choristocarpus tenellus KU2346)
ATGGCCCGCACGTCAGTTGAGAACAATTCCGCTTCCTCTTCGGTCATCGG
AGGATGTCATCCGTCGGAGGAGATTGCGATTCATCACGTTGCTGCTGGGA
ACATGCAGCGGTCCCACATCTCTCCAGAAGAATACTACAAGGGAAGGATT
CAATCTGGCCTGCTTGGTAAGGTGGAAGGTGATCGGCGCGTGACATTGAC
GCACCCGAATACTTTGCAGATGGCACCTCACACCTTCCCTCTCTTCTACC
ACCAACACCATGCACACCGCGCTCAGATGTACTATGGCGTGCCTCGCGCC
CAGACAGCTCGCGCCCAGCAGCAACAACAACAGCAACTCCACCACCAGCA
GTCGCCTTTGCTTGCATACTATCAGTATTCTGGGGCCTCAAGTCCCTCTT
CAGTGCCCACCATTTCCCCTGGACCACAGCCTGTCACTACTGGACACACG
CCACATTCATCCTACCATCCGTGCTATGGATACATTAATTTGGAAGCCTT
GGAACATCGTGCTCCGTCTGCTCAAATGGAATGGGGTGTACCACCCACCT
CAAACGCCCGCATTCCGTCCTCAAAGGCAACTAATGCTCCATCTGTGTCG
ATGTTGGTGCCTCCTACTTGTGCTGGTAGCACGGAGGCGTTCAGAGGTGG
GAAAGTCTCACTTCGTGGGAACAATGTCAGCAGCGGGGAAGATGACAACA
CCAATTCAAGAGGCGGTAATAGTTCATTGGGTGATCGGCTCTCTCCACTC
TCAACCAAAGCGAAGGCGGCGGGTGCTGTGACAACCTCAACTTCAAAAGC
CACTATTGATCGCAAGCGAAAGCTGGTGAATCATGTGTGCCAACCAACTC
TGGCAACTTCTCTCCCCACTGCTGGGTCGTCTTCCTCCTCTTCCTCTTCT
ATATGCGCTCTGTCTTCATCATTGCCTTCAACTCCAACCTCAACAACAGG
TGCCGCTGTAGCAGTGGCAACGGCCTTCAGGCAGGTAGGAGGGGGTACTG
CTGCCTTCACCCCCCCCTACCCCTCTGCTTACAGAAACAGGGCAGTAAGT
AGGCGACCCACGAGCAGGAGGAAGACTGAACATGCCCATGTGGACATGAA
AGGGAGCTCGGCTGCATGCACTCAGTTGGCGCAACCTGGATCACCAAAGG
CATCTGCTGTCCCGCAGTCAACCTCTCACATGACCCAGGTGTGCACATCT
TCATCTTCAGTCCTTGTGCAGGCCCCAACCCCAACCCAAGGTAAAGATTC
AGCTCAAGCGCCAGTTCTGGAATGCTCAGAGGCCTGGACCACTGCTTCAG
CAGAGCCCCATGTAACAGGCCCAGATGTGAAGTTAAAGACGGAGAAAGCT
CGATCACCCTTTGGTGCCTCAAAGGACTCAGGCCATGGGGGCTTACACCT
ATTGGTAGAAGCTATTGACCTAAACAACAGTTGCACTGGTGCTGGAGGAG
GTGCACAGGGGTTGAGTGAGGGGGAGGAGGCAGACTGTCAAATGCAACAA
GAGTCGAATCAGGGGCCTCCCCAAGTCAGGTGCCAGTCATCAGTGGGGCC
AAGCTCATCCTCCTCAGTATCCACTTCCTCTTCTTCCTTTGCTACATCTG
TAGTCAAGATTGAGCCTAAGCCACAAGCTTTGCCAGAGTCGGTTGCTGCT
GCCATTGTAGCCACCATGGCCTTAAGGTCAGATCCAGTGTCTGCTAAGAA
GAGATCAGCGAGTAGCGATGAAGGGAGCTTGATATCTGGAGCACAAAAGG
TGACTGTGAGTGATGCAGGTGGGGGTAGGAGTAGGGGAAACAGTACAGGA
GGACAAGCGACCCAGCAGCCTTTGGCACCACTGGGTCGACTCTGGGGAGC
CCATCTGCCTGTCACCAGCTCAGCTTACACTACCACTGTCCATCCAAGAT
CAGCTGCAGCCCCTGGATCTATGGCTGCGGCAGTTATGACCACAGTGCCA
TCAGGAGGCAAGATGCTTGTGGGCAGGGGAAATGGCCTGTTTCCCACCAT
GGCCCACCCAATCTTCTCCCATCTAACTGGAGGGTTTTCTAGTCAGGAGA
TGTTGGCCAAAGCTGGAGGGAACTCCCTTGACCAAACAGGGATAGCCTTG
ACAGCCGAGCAGAGTGTGTGCAGAGAGGGGGGGTTGGGCCCTTGGCAGGT
GCAGGGGCATTGCCACAAGCAAGGGCAGGGGACTCTTGGGTGGGAAGCAC
AT
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