mRNA_C-tenellus_contig754.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig754.2.1
Unique NamemRNA_C-tenellus_contig754.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig754.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig754contigC-tenellus_contig754:5008..8127 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size525
Hectar predicted targeting categoryother localisation
Exons3
Cds size357
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790043.3593388-UTR-C-tenellus_contig754:5007..51591680790043.3593388-UTR-C-tenellus_contig754:5007..5159Choristocarpus tenellus KU2346UTRC-tenellus_contig754 5008..5159 -
1680790043.4016964-UTR-C-tenellus_contig754:8111..81271680790043.4016964-UTR-C-tenellus_contig754:8111..8127Choristocarpus tenellus KU2346UTRC-tenellus_contig754 8112..8127 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790043.372528-CDS-C-tenellus_contig754:5159..52911680790043.372528-CDS-C-tenellus_contig754:5159..5291Choristocarpus tenellus KU2346CDSC-tenellus_contig754 5160..5291 -
1680790043.3816373-CDS-C-tenellus_contig754:7132..72071680790043.3816373-CDS-C-tenellus_contig754:7132..7207Choristocarpus tenellus KU2346CDSC-tenellus_contig754 7133..7207 -
1680790043.3924043-CDS-C-tenellus_contig754:7961..81111680790043.3924043-CDS-C-tenellus_contig754:7961..8111Choristocarpus tenellus KU2346CDSC-tenellus_contig754 7962..8111 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig754.2.1prot_C-tenellus_contig754.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig754 5160..8111 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig754.2.1

>prot_C-tenellus_contig754.2.1 ID=prot_C-tenellus_contig754.2.1|Name=mRNA_C-tenellus_contig754.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=119bp
MMQSHRVDPTTIASDLYRDVIVRNIFCTAGIVMTVTACTIATLVYEERSQ
FQAHTGEVLFLVDSVKNLLILSLTEVTHRSGFRGCISSMMRSKNGGNGSF
KNRSTRAESDDCELVTPI*
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mRNA from alignment at C-tenellus_contig754:5008..8127-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig754.2.1 ID=mRNA_C-tenellus_contig754.2.1|Name=mRNA_C-tenellus_contig754.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=3120bp|location=Sequence derived from alignment at C-tenellus_contig754:5008..8127- (Choristocarpus tenellus KU2346)
CTTCGTCCAGCCACTGATGATGCAGTCACACCGTGTGGATCCAACCACCA
TCGCATCCGATTTATATCGAGATGTCATAGTCCGCAACATTTTCTGCACA
GCAGGAATTGTTATGACTGTGACGGCATGCACCATTGCAACCTTGGTCTA
TGAAGAACGGAGTCAGGTGAATCAAAGCTGTGTCAGACTGCAGCTCCAAA
ATAGTGCCATATACCCACTGTGATATGGGACTGATTCAGTCAGGAACCTT
GGACACTCACGCTTCCAACACACTCAGACTGAACGCATTTATTATTTTTG
TTTCATTGTTGTGTGCTTCGTGTCCTTTCTAGAGGGACAACAATGTCACA
GCTTCACCAAATCTAAACGTCACAACAACATTGCTGATATTTCGCAGGGT
AAAGTATAGTACCCTAACAACAAAAACAAAGCCTCACAGTACATACACAC
CACGATTTAGAGTTATCTCAAAATCCCTTCTAGCGTCAAAATCACAACAC
AACACCGATGAGCTCCGGTGATTATTGTGGGAAGATATCTGCTTCTAGAT
ATCAAATATATTACACTGAGCAGTTCTATGGAAGATTTTTTGTTGAGTAC
ATCTCAGACTGTTATTTTGTCATGTGCTCTTGCCTGCTGTTCCTAGGATG
CCGTATCTCATCTGCAAAATGTCAGTGGGCATAAAATAACAATTTACATT
ATAGAGCTGACGTCCCCCTCACAAAATATCGTAAAATACTCATAATATAA
TTATTATTTTACATAGATTTTTCAGTTCCTTGGCCTGACCAGCCTATAAG
TTTCTCAAGCATTCCTTGTGTCCCACTCCTCCGGTTGTGTGTTAAATAGC
CAGCTCGCTTTTTTGCCTTCACTGACAGTGTGTCGTGGCTGTTGACATCT
ATCCTCTATTATTTCCACAGTTCCAGGCACATACTGGGGAAGTTCTGTTT
CTCGTTGACTCTGTCAAGAACTTGCTTATCCTTTCTCTTACTGAGGTGAG
AAAGGTTTTTGGACCTGTCTGCTTTATTTTAGCATAATGGGGTTTACATT
GTATCTCTTGAACCCTTGTGTGATGCAATCAGAAGTCATCCAATACTCCA
GGTACAAGTAGCTTCAATCCGATTAGGAGCTTGCATTACGGAGTTGGGGA
AGGAAGCAGGACTGTCCTTTTGCAGGTGGCAGAGCACCCTTATCCACCTC
AATGCGAAAATTTGATGCATTAATATGGGCGTCCATTCTAATCTCTGTAG
AAAAGTCACATGTGTGGGTGCCCACTGAGATCATTAAATTGTTAGATATA
ATTCATCTTTGCCACATAGGAACGTTCTGTATTATCTTGATACACCCCTG
AAATTGACATTGACACAGTGATCAGGCATTGTAAGGGAGTTTTTTGCTGC
CGAATACGTGTTGGGGAGGGGAATAATCCATCAATCATTCACGAGAAACA
TGGAAATAGACCTGCGCCACAGGGCATCATGACGGCTACTATCTATAATA
TCAGTTCACTTCGCTTAGCAACCCCATGTTACATGCAAAGAGTAATGTCA
AACTGAATAACCCCAACTACTACTACGTTGTACAACTAGAACAACATGAA
TACAGAGGTTGAGAGGATTGCGAAACAAGTAAAATATATTGTCTCAATAC
CAAACAAAGGTTATTTAAATGGTCTACCTACGGCTTTCATATTGATAGGG
TTTGAGACAGTCACAAGATTAGCATGTCCCTTATTGACTCAACATCATAT
ACCAACTATACTCAAATGGTGCACCTCTATTTTTCATGGTATGATTTTTC
TTCCGATCAATCATGTTACAATTATACCTATCTTAGCTTAACTTATATGC
GTCATTGGACCTATCAGGTCAAGCATAGGTTTGATTTCAAGTGGTTACAT
TTTGACAGTCCTGCAACACTCAGCGTTCTTGTCATGCATCACCCAGAAAT
GGGACTACCAACAGCTCAACCCAACCAAACGAGTTGTACCACCTAACCTG
TATCCCAAGCCCAGAAGTACACACTGAAAGGCAGCGTTTAAGAGAGGTTT
ACCGCTCAGTGCGTGGCACGGTGTGATCGCCAAAAAAAATTGAAGGCGTA
TGTTAGAATACTTACACAGTTAGCGATAAATATGATTAAACCACTCTGAT
TCATCCTCTAACGAATTATGGTACACACGACAGTTGGGGATTTTCCGGGC
TAGTGAGCTGCCCACGGAAAATTTCCTCCCTCTCATGTACCCTGTTAAAA
AGAGACATGCATTCCATATTGATGGCGTACTGCAAGTTGTAAGGCTATTA
CGTCCTAATGATATTCCGGCTCCACAGGTACTCACCACGATGGGAATATG
TGGTACTATTCTCAAGCTTATAGACTGATCACAAGGCTCCAAGAGAGTGA
ACCCAATATCGATAGATGCATGACAGCTGAGCAATAGCAGATCAGGCTGT
GGTGTTGACAAGCATCATTTGAGATATTTCACTGTTATCTACAACTGAGC
TCATCTCACATTAGTGGGTTAGGGGTTCACAATTGCGATTTAAAATGTCG
CAGATATTTACATATCATATACATCATCTGAATAGTATCGATTTATTCTC
AAGTTACACATTTTGCATTGAAACTGTGTGGGTTTGATCTTGCCACTTTG
GCGGTGTTCAAACGCATATTGCTGCTGGAACTGGTTAAGACGTAGATAAG
GAAATACAAACTACCTATTTATCACATTGGCTCGATATGGGATCTTTGCT
ATTTTGCCGATGAAAATGCTGCTTTTCGTTCATGACCTCTATCCTTAGAT
ATTTGCAGTATTGAAGACCTCGAACCCCCTCACCAGGTCACACATCGCTC
AGGCTTCAGAGGTTGCATATCCTCAATGATGAGGTCAAAAAATGGAGGAA
ACGGTTCTTTCAAGAATCGGAGCACACGCGCCGAAAGTGATGATTGTGAA
TTAGTCACACCAATATAAGTTTTGTAGGACACTTGAGGAGGAATGCATTT
AATGCTACCACCACCAGAATACATATCATGATGTTATTCCTGATGCACAG
GCAACCTTGTTTAGGAACATTTCTCTCCTTTTTCAAGGCTATACACTACA
CCGGGTAATTGTCAGAGACC
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Coding sequence (CDS) from alignment at C-tenellus_contig754:5008..8127-

>mRNA_C-tenellus_contig754.2.1 ID=mRNA_C-tenellus_contig754.2.1|Name=mRNA_C-tenellus_contig754.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=357bp|location=Sequence derived from alignment at C-tenellus_contig754:5008..8127- (Choristocarpus tenellus KU2346)
ATGATGCAGTCACACCGTGTGGATCCAACCACCATCGCATCCGATTTATA
TCGAGATGTCATAGTCCGCAACATTTTCTGCACAGCAGGAATTGTTATGA
CTGTGACGGCATGCACCATTGCAACCTTGGTCTATGAAGAACGGAGTCAG
TTCCAGGCACATACTGGGGAAGTTCTGTTTCTCGTTGACTCTGTCAAGAA
CTTGCTTATCCTTTCTCTTACTGAGGTCACACATCGCTCAGGCTTCAGAG
GTTGCATATCCTCAATGATGAGGTCAAAAAATGGAGGAAACGGTTCTTTC
AAGAATCGGAGCACACGCGCCGAAAGTGATGATTGTGAATTAGTCACACC
AATATAA
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