mRNA_C-tenellus_contig7526.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7526.2.1
Unique NamemRNA_C-tenellus_contig7526.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig7526.2.1 vs. uniprot
Match: D7FSF6_ECTSI (Diphthine--ammonia ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSF6_ECTSI)

HSP 1 Score: 159 bits (403), Expect = 8.230e-45
Identity = 79/153 (51.63%), Postives = 105/153 (68.63%), Query Frame = 1
Query:    4 QSTKITDVMLQAKHEGLDLLVVPLKGGEATTPMGPYVTTVLDALRPLRIEALYFGDLHLEDIRGWREDTFSKIYPCRFPLFGVPYNDLLGRLFSMV--GFSIRVTSVREGLEGVGGLKVGHPYNHDLVEVLKAGVEGIDIMGENGEFHTHIYH 456
            Q TKITDV+ QA+HEG+DLL VPL GG    P   Y  T+  AL+PLR++AL FGDLHL++++ WR+D FS  YPC FPLF VPY +LL RL+  +  G +++V+SV    +G+ G+ VG  Y    V+ L    + +D MGENGEFHTH+YH
Sbjct:  159 QDTKITDVLEQARHEGVDLLAVPLGGGSGPFP-DAYSVTLKAALKPLRVKALAFGDLHLQELKSWRQDVFSGAYPCEFPLFEVPYEELLSRLWEEIAAGVTLKVSSVSTDHKGLEGISVGDVYCEAFVKRLP---DIVDAMGENGEFHTHVYH 307          
BLAST of mRNA_C-tenellus_contig7526.2.1 vs. uniprot
Match: A0A835YXG3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXG3_9STRA)

HSP 1 Score: 154 bits (388), Expect = 9.030e-43
Identity = 83/154 (53.90%), Postives = 101/154 (65.58%), Query Frame = 1
Query:    4 QSTKITDVMLQAKHEGLDLLVVPLKGGEATTPMGPYVTTVLDALRPL--RIEALYFGDLHLEDIRGWREDTFSKIYPCRFPLFGVPYNDLLGRLFSMVG---FSIRVTSVREGLEGVGGLKVGHPYNHDLVEVLKAGVEGIDIMGENGEFHTHI 450
            Q+T I DVM QAK   +DLL VPLKGGEA+T  GPYV  V+ AL P   RI AL FGDLHL DIR WRE TF+  YPCRFPLF  PY +L  RL++       S+ V++VR+ L   G L++G  Y+   V  L    +G+D MGENGEFHTH+
Sbjct:  151 QNTNIRDVMDQAKALQVDLLAVPLKGGEASTGAGPYVDAVMAALEPFKQRIRALCFGDLHLVDIRAWREATFTDTYPCRFPLFNTPYAELKARLWAEAERGTISVTVSAVRDDLLEQGPLRIGAQYDAAFVGALP---QGVDEMGENGEFHTHV 301          
BLAST of mRNA_C-tenellus_contig7526.2.1 vs. uniprot
Match: A0A6I7QBU6_9BACT (Diphthami_syn_2 domain-containing protein n=1 Tax=Balneolaceae bacterium TaxID=2053516 RepID=A0A6I7QBU6_9BACT)

HSP 1 Score: 87.4 bits (215), Expect = 2.900e-18
Identity = 59/153 (38.56%), Postives = 78/153 (50.98%), Query Frame = 1
Query:    4 QSTKITDVMLQAKHEGLDLLVVPLKGGEATTPMGPYVTTVLDALRPLRIEALYFGDLHLEDIRGWREDTFSKI-YPCRFPLFGVPYNDLLGRLFSMVGFSIRVTSVREGLEGVGGLKVGHPYNHDLVEVLKAGVEGIDIMGENGEFHTHIYHD 459
            Q+  I  V  QA   GL L  VPL    +       ++   + L P  I  L FGDLHLEDIR WRE+ FS++ Y CRFP++  PY +L  RL      SI+V+ V    +G   +K G  +  +    L    + ID MGE GEFHT +  D
Sbjct:   52 QNIPIRRVQNQAMKLGLILYTVPLSYPSSNEQYLKTLSKSFEQL-PFSIHHLIFGDLHLEDIRKWREEQFSEMGYKCRFPIWKKPYEELFDRL-EEENVSIKVSGVMSEYDGY--IKPGDLFTREYAHSLP---KQIDRMGEKGEFHTEVIFD 197          
BLAST of mRNA_C-tenellus_contig7526.2.1 vs. uniprot
Match: UPI001BFE4E2C (DUF5522 domain-containing protein n=1 Tax=unclassified Polynucleobacter TaxID=2640945 RepID=UPI001BFE4E2C)

HSP 1 Score: 89.0 bits (219), Expect = 3.440e-18
Identity = 61/163 (37.42%), Postives = 84/163 (51.53%), Query Frame = 1
Query:    4 QSTKITDVMLQAKHEGLDLLVVPLKGGEATTPMGPYVTTVLDALRPLR------IEALYFGDLHLEDIRGWREDTFSKIYPCRFPLFGVPYNDLLGRLFSMV-GFSIRVTSVREGLEGVGGLKVGHPYNHDLVEVLKAGVEGIDIMGENGEFHTHIYHDEYVV 471
            Q   I ++  Q++   + L +VPL       P   Y   + +AL  ++      IE L FGDLHLEDIR WR DT+S+ Y    PLFG PY +LL RL+    G ++ +T   +     G L  G PY  +LV  L+     IDIM ENGE HT +Y   ++ 
Sbjct:  121 QDIHIKNIAKQSEFLKIPLCLVPLY------PNSDYKKAIEEALVMVQDRTSCSIERLVFGDLHLEDIRKWRVDTWSE-YEVFTPLFGTPYKELLSRLWEYRRGMNLSITLSTDVKTVNGVLPTGTPYTPELVTELEKS--NIDIMLENGEGHTFVYPSNWIA 274          
BLAST of mRNA_C-tenellus_contig7526.2.1 vs. uniprot
Match: UPI000D3C1BF8 (DUF5522 domain-containing protein n=1 Tax=Polynucleobacter difficilis TaxID=556054 RepID=UPI000D3C1BF8)

HSP 1 Score: 86.7 bits (213), Expect = 2.520e-17
Identity = 58/163 (35.58%), Postives = 81/163 (49.69%), Query Frame = 1
Query:    4 QSTKITDVMLQAKHEGLDLLVVPLKGGEATTPMGPYVTTVLDALRPLR------IEALYFGDLHLEDIRGWREDTFSKIYPCRFPLFGVPYNDLLGRLFSMVG-FSIRVTSVREGLEGVGGLKVGHPYNHDLVEVLKAGVEGIDIMGENGEFHTHIYHDEYVV 471
            Q   I ++  Q++     L + PL       P   Y + + +AL  ++      IE L FGDLHLEDIR WR DT+S+ Y    PLFG  Y +LL +L+       + +T   E     G L  G PY  +L+  LK    GID+M ENGE HT +Y   ++ 
Sbjct:  121 QDIHIKNIAKQSEFLKTPLCLAPLH------PNSDYKSAIKEALNMIQDRTSNSIERLVFGDLHLEDIRKWRVDTWSE-YEVSTPLFGTHYEELLAKLWEYKKEMDLSITLSTEVKTPNGFLPTGTPYTPELIVELKK--HGIDVMLENGEGHTFVYPSNWIA 274          
BLAST of mRNA_C-tenellus_contig7526.2.1 vs. uniprot
Match: A0A1Y2C0D4_9FUNG (Diphthine--ammonia ligase (Fragment) n=1 Tax=Rhizoclosmatium globosum TaxID=329046 RepID=A0A1Y2C0D4_9FUNG)

HSP 1 Score: 87.8 bits (216), Expect = 3.130e-17
Identity = 65/178 (36.52%), Postives = 89/178 (50.00%), Query Frame = 1
Query:    4 QSTKITDVMLQAKHEGLDLLVVPLKGGEATTPMGPYVTTVLDALRPLR-------------IEALYFGDLHLEDIRGWREDTFSKIYPCRFPLFGVPYN-DLLGRLFSM-------VGFSIRVTSVR------EGLE--GVGGLKVGHPYNHDLVEVLKAGVEGIDIMGENGEFHTHI 450
            Q+  I D+  Q+    L LL+VP +G ++      Y+ T+ DAL  L              I+ L FGDL LEDIR WRE +FS +YPCRFPLF + +  +L+ RL+ +       + FS     V       EGLE    G ++    Y   LVE      E +D+MGE GEFHT +
Sbjct:  216 QNISIGDISAQSSCLNLPLLLVP-RGADSKNET--YIKTITDALEQLSREMSALDSSKSSTIQYLVFGDLFLEDIRAWRESSFSNLYPCRFPLFELDFQKNLMPRLWELCEEYEIRISFSAMENEVMKKWVNDEGLEKDDEGNVR----YTKSLVE-RSDFPETVDLMGERGEFHTKV 385          
BLAST of mRNA_C-tenellus_contig7526.2.1 vs. uniprot
Match: UPI001C0C0339 (DUF5522 domain-containing protein n=1 Tax=Polynucleobacter sp. AP-Latsch-80-C2 TaxID=2576931 RepID=UPI001C0C0339)

HSP 1 Score: 80.9 bits (198), Expect = 3.490e-15
Identity = 56/157 (35.67%), Postives = 80/157 (50.96%), Query Frame = 1
Query:    4 QSTKITDVMLQAKHEGLDLLVVPLKGGEATTPMGPYVTTVLDALRPL------RIEALYFGDLHLEDIRGWREDTFSKIYPCRFPLFGVPYNDLLGRLFSMVG-FSIRVTSVREGLEGVGGLKVGHPYNHDLVEVLKAGVEGIDIMGENGEFHTHIY 453
            Q+  I ++  Q++   L L +VPL       P   Y  ++ +AL+ +      +IE L FGDLHL+ IR WR DT+ + Y    PLF +PY  LL RL+ +     + +T   E       L +G PY   LVE LK     +D M ENGE HT ++
Sbjct:  121 QNIHIKNIAKQSEFLKLPLCLVPL------APNTDYKASIQEALQMIIAQTGAKIERLVFGDLHLQSIRQWRVDTWPE-YEIATPLFDLPYEGLLNRLWQLQKEMDLSITLSTELSLAKETLAIGTPYTQLLVEQLKEN--NVDAMLENGEAHTLVF 268          
BLAST of mRNA_C-tenellus_contig7526.2.1 vs. uniprot
Match: G5ADK1_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G5ADK1_PHYSP)

HSP 1 Score: 82.0 bits (201), Expect = 6.180e-15
Identity = 54/134 (40.30%), Postives = 75/134 (55.97%), Query Frame = 1
Query:  148 IEALYFGDLHLEDIRGWREDTFSKIYPCRFPLFGVPYND----LLGRLFSMVGFSIRVTSVRE---GLEGVGG-LKVGHPYNHDLVEVL-KAGVEG---IDIMGENGEFHTHIYHDEYVVGLGESSSDEEDTSE 513
            + +L FGDLHL+DIR WRE TFS+ Y  RFP++   Y       L RL S  G  I ++S+ +     +G+G   +VG  Y+ +LV+   KA VE    +D+MGE GEFHT  Y  ++    G S   +  TSE
Sbjct:  584 VSSLVFGDLHLDDIRAWREQTFSQDYKLRFPVWKKDYESELLPSLERLCSKTGAKIYLSSIDKDQLASKGIGADWQVGQEYDWELVQKCNKAAVEDAKRVDLMGECGEFHTQYYPMQHFSSSGISRFAKTPTSE 717          
BLAST of mRNA_C-tenellus_contig7526.2.1 vs. uniprot
Match: A0A7S3PJ45_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PJ45_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 2.840e-14
Identity = 57/160 (35.62%), Postives = 80/160 (50.00%), Query Frame = 1
Query:    1 KQSTKITDVMLQAKHEGLDL--LVVPLKGGEATTPMGPYVTTVLDALRPLRIE--------ALYFGDLHLEDIRGWREDTFSKIYPCRFPLFGVPYNDLLGRLF--SMVGFSIRVTSVREGLEGVGGLKVGHPYNHDLVEVLKAGVEGIDIMGENGEFHT 444
            +Q+ + T+   Q K  GLDL  +  PL       P   Y+ T+   LR +  E         L FGDLHL DI+ WRED FS+ Y C FP+F   Y++L   LF  S++ + I V++V    +    L VG  ++  + + L      ID  GE GEFHT
Sbjct:   40 EQNIRFTEATDQVKALGLDLDLMACPLP---PNCPNTVYIDTISKVLRDISSEYQIPKIGMQLVFGDLHLADIKKWREDMFSE-YKCIFPIFNQQYSELCSLLFGSSLLDY-IEVSNVTVKSDF---LTVGMTFDKSVYDKLTDSAADIDPFGELGEFHT 191          
BLAST of mRNA_C-tenellus_contig7526.2.1 vs. uniprot
Match: A0A662XXU6_9STRA (Diphthine--ammonia ligase n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XXU6_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 3.030e-13
Identity = 57/178 (32.02%), Postives = 82/178 (46.07%), Query Frame = 1
Query:    4 QSTKITDVMLQAKHEGLDLLVVPLKGGEATTPMGPYVTTVLDALRPL---------------------RIEALYFGDLHLEDIRGWREDTFSKIYPCRFPLFGVPYND----LLGRLFSMVGFSIRVTSV---REGLEGVGGLKVGHPYNHDLVEVLKA-GVEGIDIMGENGEFHTHI 450
            Q+ ++  ++ QA+   L L +V +  G+A      Y + V  ALR L                      I AL FGDLHL+DIR WRE TF+K +  RFP++   Y       L RL    G  I  +++   R G       ++G  Y+   VE       + +D+MGENGEFHT +
Sbjct:  544 QNIEVQTIVAQAEALELPLCLVAVGLGDA------YTSAVQSALRDLPEQMARIRKSKKTPKNLDPTPAIAALAFGDLHLQDIRNWREQTFAKQFTLRFPVWQKDYRTELLPALSRLCVKTGAKIYFSNIDTDRVGSSSEAAWQLGQEYDWKQVEARNEHSDQPVDLMGENGEFHTCV 715          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7526.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FSF6_ECTSI8.230e-4551.63Diphthine--ammonia ligase n=2 Tax=Ectocarpus TaxID... [more]
A0A835YXG3_9STRA9.030e-4353.90Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6I7QBU6_9BACT2.900e-1838.56Diphthami_syn_2 domain-containing protein n=1 Tax=... [more]
UPI001BFE4E2C3.440e-1837.42DUF5522 domain-containing protein n=1 Tax=unclassi... [more]
UPI000D3C1BF82.520e-1735.58DUF5522 domain-containing protein n=1 Tax=Polynucl... [more]
A0A1Y2C0D4_9FUNG3.130e-1736.52Diphthine--ammonia ligase (Fragment) n=1 Tax=Rhizo... [more]
UPI001C0C03393.490e-1535.67DUF5522 domain-containing protein n=1 Tax=Polynucl... [more]
G5ADK1_PHYSP6.180e-1540.30Uncharacterized protein n=1 Tax=Phytophthora sojae... [more]
A0A7S3PJ45_9STRA2.840e-1435.63Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
A0A662XXU6_9STRA3.030e-1332.02Diphthine--ammonia ligase n=2 Tax=Nothophytophthor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7526contigC-tenellus_contig7526:4795..5319 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FSF6
PFAMsDiphthami_syn_2,Peripla_BP_2
Model size525
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue8.01e-41
EggNOG OGs2CTC6@1|root,2S4BH@2759|Eukaryota
Ec32 ortholog descriptionDUF71 domain
Ec32 orthologEc-04_000660.1
Cds size498
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790042.7362056-CDS-C-tenellus_contig7526:4794..52921680790042.7362056-CDS-C-tenellus_contig7526:4794..5292Choristocarpus tenellus KU2346CDSC-tenellus_contig7526 4795..5292 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790042.7511861-UTR-C-tenellus_contig7526:5292..53191680790042.7511861-UTR-C-tenellus_contig7526:5292..5319Choristocarpus tenellus KU2346UTRC-tenellus_contig7526 5293..5319 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7526.2.1prot_C-tenellus_contig7526.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7526 4795..5292 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7526.2.1

>prot_C-tenellus_contig7526.2.1 ID=prot_C-tenellus_contig7526.2.1|Name=mRNA_C-tenellus_contig7526.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=166bp
MLQAKHEGLDLLVVPLKGGEATTPMGPYVTTVLDALRPLRIEALYFGDLH
LEDIRGWREDTFSKIYPCRFPLFGVPYNDLLGRLFSMVGFSIRVTSVREG
LEGVGGLKVGHPYNHDLVEVLKAGVEGIDIMGENGEFHTHIYHDEYVVGL
GESSSDEEDTSEEGD*
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mRNA from alignment at C-tenellus_contig7526:4795..5319-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7526.2.1 ID=mRNA_C-tenellus_contig7526.2.1|Name=mRNA_C-tenellus_contig7526.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=525bp|location=Sequence derived from alignment at C-tenellus_contig7526:4795..5319- (Choristocarpus tenellus KU2346)
AAACAATCCACAAAGATCACTGATGTGATGCTGCAGGCAAAACATGAGGG CCTGGACCTCCTGGTCGTCCCCCTTAAGGGGGGGGAGGCAACAACACCAA TGGGGCCATATGTGACAACAGTGTTAGATGCCCTCCGTCCTCTAAGGATA GAGGCACTCTACTTTGGTGATCTCCATTTAGAGGATATTCGAGGGTGGCG AGAGGACACATTCAGCAAGATATACCCATGTCGATTTCCACTGTTTGGGG TACCATATAATGACCTGCTTGGAAGGCTCTTTTCCATGGTTGGGTTTTCT ATTCGTGTGACTTCTGTTAGGGAGGGCCTTGAAGGGGTAGGAGGACTTAA GGTGGGGCATCCATATAACCATGACCTAGTGGAGGTTCTGAAAGCAGGGG TGGAGGGCATTGATATCATGGGTGAAAATGGGGAGTTCCATACCCATATC TACCATGATGAATATGTGGTTGGTTTGGGTGAATCGTCATCAGATGAGGA GGACACAAGTGAGGAGGGAGACTGA
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Coding sequence (CDS) from alignment at C-tenellus_contig7526:4795..5319-

>mRNA_C-tenellus_contig7526.2.1 ID=mRNA_C-tenellus_contig7526.2.1|Name=mRNA_C-tenellus_contig7526.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=498bp|location=Sequence derived from alignment at C-tenellus_contig7526:4795..5319- (Choristocarpus tenellus KU2346)
ATGCTGCAGGCAAAACATGAGGGCCTGGACCTCCTGGTCGTCCCCCTTAA
GGGGGGGGAGGCAACAACACCAATGGGGCCATATGTGACAACAGTGTTAG
ATGCCCTCCGTCCTCTAAGGATAGAGGCACTCTACTTTGGTGATCTCCAT
TTAGAGGATATTCGAGGGTGGCGAGAGGACACATTCAGCAAGATATACCC
ATGTCGATTTCCACTGTTTGGGGTACCATATAATGACCTGCTTGGAAGGC
TCTTTTCCATGGTTGGGTTTTCTATTCGTGTGACTTCTGTTAGGGAGGGC
CTTGAAGGGGTAGGAGGACTTAAGGTGGGGCATCCATATAACCATGACCT
AGTGGAGGTTCTGAAAGCAGGGGTGGAGGGCATTGATATCATGGGTGAAA
ATGGGGAGTTCCATACCCATATCTACCATGATGAATATGTGGTTGGTTTG
GGTGAATCGTCATCAGATGAGGAGGACACAAGTGAGGAGGGAGACTGA
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