mRNA_C-tenellus_contig7519.1.2 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7519.1.2
Unique NamemRNA_C-tenellus_contig7519.1.2
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7519.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7519contigC-tenellus_contig7519:3194..6001 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FLL4
PFAMsPHD,PWWP,SET
Model size1053
Max annot lvl2759|Eukaryota
KEGG rclassRC00003,RC00060,RC00181,RC00496
KEGG koko:K06101,ko:K11424,ko:K16675
KEGG ReactionR03875,R03938,R04866,R04867
KEGG Pathwayko00310,ko04391,ko05202,map00310,map04391,map05202
Hectar predicted targeting categoryother localisation
Exons3
Evalue6.16e-05
EggNOG OGsCOG2940@1|root,KOG1081@2759|Eukaryota,KOG1083@2759|Eukaryota
EC2.1.1.43,2.3.1.225
Descriptionuterine gland development
Cds size822
COG categoryH
BRITEko00000,ko00001,ko01000,ko03036
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790042.0070558-UTR-C-tenellus_contig7519:3193..33741680790042.0070558-UTR-C-tenellus_contig7519:3193..3374Choristocarpus tenellus KU2346UTRC-tenellus_contig7519 3194..3374 +
1680790042.0656705-UTR-C-tenellus_contig7519:5951..60011680790042.0656705-UTR-C-tenellus_contig7519:5951..6001Choristocarpus tenellus KU2346UTRC-tenellus_contig7519 5952..6001 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790042.0229387-CDS-C-tenellus_contig7519:3374..37491680790042.0229387-CDS-C-tenellus_contig7519:3374..3749Choristocarpus tenellus KU2346CDSC-tenellus_contig7519 3375..3749 +
1680790042.0390549-CDS-C-tenellus_contig7519:4060..42811680790042.0390549-CDS-C-tenellus_contig7519:4060..4281Choristocarpus tenellus KU2346CDSC-tenellus_contig7519 4061..4281 +
1680790042.0509837-CDS-C-tenellus_contig7519:5725..59511680790042.0509837-CDS-C-tenellus_contig7519:5725..5951Choristocarpus tenellus KU2346CDSC-tenellus_contig7519 5726..5951 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7519.1.2prot_C-tenellus_contig7519.1.2Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7519 3375..5951 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7519.1.2

>prot_C-tenellus_contig7519.1.2 ID=prot_C-tenellus_contig7519.1.2|Name=mRNA_C-tenellus_contig7519.1.2|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=274bp
MKKDVEGARSVVVVEGTIPNSSPATAITSSTQASDSLGKINPENEGRLRE
PIDAGDMGALYKTLDAVGCLPPPPCEQREGDNDTDSDMVIDVENGAPETG
AGDGCPFATTSSNFHLVKKAASSVQVPPNLILEAWRVLKEWRAKLGPSDL
ADVYNTADKKWYLAKILEAFSSDSASTATQSGIGIGDEIRIHYQGWPSKY
DENIRRDSHFLQPPNAHTKPRKKPQKKSRKPQERQSSATAPARVLFFFAP
SLSSLDHQTSFPPKAPMRSCLFC*
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mRNA from alignment at C-tenellus_contig7519:3194..6001+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7519.1.2 ID=mRNA_C-tenellus_contig7519.1.2|Name=mRNA_C-tenellus_contig7519.1.2|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2808bp|location=Sequence derived from alignment at C-tenellus_contig7519:3194..6001+ (Choristocarpus tenellus KU2346)
ATTTCAAGGTGAGAACGACATCAACAAAGCTAAAGGGGGTGGTGGGTCAA
GGTGAATCTCGATAGAGAAAACGTGGGTAGTAGGGGTACGTTGTGGAGGG
GAGAAGCTTGCCGTCGCTTGTGCCAGAGCCCTTCTAATTATTTGAAGAGA
TCGAGCGGAACACAGTTTCAAATATTTCAATATGAAAAAAGATGTCGAGG
GTGCTCGGTCAGTTGTAGTCGTGGAGGGGACGATACCAAACTCTTCCCCC
GCTACAGCGATTACCAGTTCCACACAGGCTTCTGATTCTCTTGGAAAAAT
CAATCCCGAGAATGAAGGCAGGCTCAGGGAACCAATTGATGCAGGTGATA
TGGGTGCTCTGTACAAAACCCTTGATGCAGTCGGGTGTCTACCCCCTCCC
CCCTGTGAACAACGCGAAGGAGACAATGATACTGACTCTGACATGGTTAT
CGACGTGGAGAACGGTGCTCCAGAGACAGGGGCTGGAGACGGGTGTCCAT
TTGCAACAACCTCAAGCAATTTTCACCTCGTCAAGAAAGCCGCGAGTTCG
GTACAGGCGAGTTAGCAACAGCTGTTTTGGTCTGTTATGGTGAAGTCGAG
CCCGAAACATGCAGTGCGCACCCGCAAAAGCTTGCCTCTTTATTTAAGTT
AGCGTGGTCCACTTGTAAACCTCCAGGAAACTGGATTCGTACCTCCACCA
ACGGCAACACCCTTCGATAGTACATATAACCAGAACCAGAATTACATCCT
GGACTTTGTGGACGCAAGCTCCCACGACAGCAGTTTCACCCCCTCCCCCC
CTCCCCCTACCTCCCATTATGACTCTGTTCTACCCTGCATGACCCTTCTC
CGATCCTACCAATATAGGTACCACCTAACCTAATTCTTGAAGCCTGGAGA
GTCCTGAAGGAGTGGCGAGCCAAACTAGGACCGTCTGACCTTGCTGATGT
ATACAATACTGCCGACAAGAAGTGGTACCTTGCAAAAATTTTAGAAGCTT
TCTCATCCGATTCTGCTTCCACTGCCACCCAATCCGGGATTGGCATTGGT
GATGAGATTCGAATCCACTACCAAGGGTGGCCATCCAAGTGAGTATAGAG
ACAACCACCACATCATAACACCACGGCTGAACCTGAAAGTTACCAGGGGG
GCTGGATATGGTTGTAGTCTAATGGGAAGACATGAAAAGAAAGTACCCTT
GTGAAGTTTGCTATTTTGTGTTGTGATGGGCTGGAGCATGATCAGTTGAG
CTCCTTTTTGGAGATGGACCAAAGAAAGGCCTTCGCACCAGTATCCTAAC
GTCAAACGCGGCTATTATTGACTCTTTTCGTATTTTCAATTGTTTATATG
TTGGAGCAGGTGTATAGAGACATAAAGTGTAGCTTGCACATATCCATCAT
TGCTGTGTGTTGTGTTGGAAAATGTCCCTGTCCACAAGGATGTCAAAGGG
CTGGTAGTACGAAAGCGCCAGCTCGGTGGTTTGCAGGACGGTCAGGGTAT
GACCGAGGGACTTTCCTTCTTGTCACTCCTTCGAATATATCTGAAAACCC
GTGGATGCTGTATGCTTTGACCATGTATATGCAGACATCCACGAGCTAGC
TTCCCGTTCAAGATCAGCACACATGGTTTGAATGTTACCTTATCCAAAAT
CCAAAATGACACATACTTTGAAGTACGACAAAGTAAGTGCACTGTACAGT
TTATTCCAACGCATACACCTTAGAGTAGACTTTGTTGTGATTACCATCCT
GCTATCCATGGACTGATGTGCGGACGCGTGGTGAATGCTTGAGCAAAATC
TCAATGAGTGGGATGGTAGTCTTGTCACCAGTGGGATCTCGACATCTACG
CTGATCTCGACATCTACGCTGCCCGCCTCAGCTCTGTGTGCCATTCCTGT
TTCTAATTTCTGAAGCACGTCAACAACATTCTGTAAGACTCCTAACATAT
AGCCAAGGGAGTTGGCACAAAGTGGGGCAGGGGCGTAGTGCAACCAGGTA
CAGTGACGCACGGACACAGGACAACTTAAAATGTTTTGAGGGTATAAAAT
TTAGGGAAATGAAAATCTCTTGATCCTACGCATTTTCGATTTTTTTAGCG
CCTTGTTTTTTTTATTTGGTCTCTCTGCTCAGCAGCACCTTACAAGCCTC
TTCTTTTTCTTTTTTTTTCAAAACAATGCTCGATGAACAAGCTAACCGAC
TTGCCCGGTCTGGGGAAGGCGTTGAATCCTTTCTCGTTGTCCTCTCCCTT
GCCCCTCATCCTCTCTCACGTGCCCCCGCACTCTGCCCCTGTACGGGTGT
GATCTAATATATCTCGTGATCCAACAAACTCCCCATTGCTGAAATGATTT
GTGTACTCCTTATATTCAGGCCTGTTAGCAGACCACCGCTCCACAGTGTC
CACCCTGAGGCTACCCCCTTGCTCGCTTTTTCTCTCTTTTGTCCTCCCCC
TGTAACATCTTGTCCTATACTTCCTCTCTCCCTTCCCCTCCCCTGTCTCC
TCCCTGCTCCCATGAACTCACCGCACTCCCAGGTATGACGAGAACATTAG
GAGGGACTCACACTTTCTTCAGCCACCCAATGCGCATACTAAGCCCAGGA
AAAAACCACAGAAAAAATCCAGGAAGCCACAGGAAAGGCAAAGTTCGGCT
ACTGCCCCAGCCAGGGTCCTATTTTTTTTCGCTCCCAGTCTCTCCTCCCT
CGATCACCAAACCTCGTTCCCACCTAAGGCCCCCATGCGCAGTTGTCTTT
TTTGCTGATATTCTCTTCCAAATTGTCCCATTGTTCTTTGACCCCAAATA
GATTCCCC
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Coding sequence (CDS) from alignment at C-tenellus_contig7519:3194..6001+

>mRNA_C-tenellus_contig7519.1.2 ID=mRNA_C-tenellus_contig7519.1.2|Name=mRNA_C-tenellus_contig7519.1.2|organism=Choristocarpus tenellus KU2346|type=CDS|length=822bp|location=Sequence derived from alignment at C-tenellus_contig7519:3194..6001+ (Choristocarpus tenellus KU2346)
ATGAAAAAAGATGTCGAGGGTGCTCGGTCAGTTGTAGTCGTGGAGGGGAC
GATACCAAACTCTTCCCCCGCTACAGCGATTACCAGTTCCACACAGGCTT
CTGATTCTCTTGGAAAAATCAATCCCGAGAATGAAGGCAGGCTCAGGGAA
CCAATTGATGCAGGTGATATGGGTGCTCTGTACAAAACCCTTGATGCAGT
CGGGTGTCTACCCCCTCCCCCCTGTGAACAACGCGAAGGAGACAATGATA
CTGACTCTGACATGGTTATCGACGTGGAGAACGGTGCTCCAGAGACAGGG
GCTGGAGACGGGTGTCCATTTGCAACAACCTCAAGCAATTTTCACCTCGT
CAAGAAAGCCGCGAGTTCGGTACAGGTACCACCTAACCTAATTCTTGAAG
CCTGGAGAGTCCTGAAGGAGTGGCGAGCCAAACTAGGACCGTCTGACCTT
GCTGATGTATACAATACTGCCGACAAGAAGTGGTACCTTGCAAAAATTTT
AGAAGCTTTCTCATCCGATTCTGCTTCCACTGCCACCCAATCCGGGATTG
GCATTGGTGATGAGATTCGAATCCACTACCAAGGGTGGCCATCCAAGTAT
GACGAGAACATTAGGAGGGACTCACACTTTCTTCAGCCACCCAATGCGCA
TACTAAGCCCAGGAAAAAACCACAGAAAAAATCCAGGAAGCCACAGGAAA
GGCAAAGTTCGGCTACTGCCCCAGCCAGGGTCCTATTTTTTTTCGCTCCC
AGTCTCTCCTCCCTCGATCACCAAACCTCGTTCCCACCTAAGGCCCCCAT
GCGCAGTTGTCTTTTTTGCTGA
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