mRNA_C-tenellus_contig7514.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7514.1.1
Unique NamemRNA_C-tenellus_contig7514.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig7514.1.1 vs. uniprot
Match: D8LNG2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNG2_ECTSI)

HSP 1 Score: 118 bits (296), Expect = 1.870e-29
Identity = 55/73 (75.34%), Postives = 60/73 (82.19%), Query Frame = 1
Query:    7 APSRAVSRLVAQANQDGADYMYQINDDTIFITPRWAEVFATALRDNPLGRNVGVTGPVDTNNKRILTHAFVHR 225
            APS  VS L+  A  DG DY+YQINDDT+  TP WAEVF +ALRDNPLGRNVGVTGP DTNN+RILTHAFVHR
Sbjct:  450 APSYVVSALMQDAYDDGCDYLYQINDDTLINTPGWAEVFTSALRDNPLGRNVGVTGPADTNNRRILTHAFVHR 522          
BLAST of mRNA_C-tenellus_contig7514.1.1 vs. uniprot
Match: A0A7S2MG38_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MG38_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 1.000e-21
Identity = 43/74 (58.11%), Postives = 54/74 (72.97%), Query Frame = 1
Query:    4 GAPSRAVSRLVAQANQDGADYMYQINDDTIFITPRWAEVFATALRDNPLGRNVGVTGPVDTNNKRILTHAFVHR 225
            G+PS+ V  L   A +DG DYM+Q+NDDT+ ++  WA+ F  AL  N +  N+GVTGPVDTNN RILTHAFVHR
Sbjct:  118 GSPSQVVVGLANAAYKDGIDYMFQVNDDTVIVSHDWAKSFIRALESNTIHPNLGVTGPVDTNNDRILTHAFVHR 191          
BLAST of mRNA_C-tenellus_contig7514.1.1 vs. uniprot
Match: A0A482RTF1_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RTF1_9ARCH)

HSP 1 Score: 88.6 bits (218), Expect = 7.810e-21
Identity = 38/75 (50.67%), Postives = 54/75 (72.00%), Query Frame = 1
Query:    1 QGAPSRAVSRLVAQANQDGADYMYQINDDTIFITPRWAEVFATALRDNPLGRNVGVTGPVDTNNKRILTHAFVHR 225
            +GAPS+ VS+LV  A+ +G DY YQINDDT+ ++P W       L+++PL  N+GVTGP D+ N++I TH+F HR
Sbjct:   49 EGAPSQVVSQLVLTAHSEGYDYFYQINDDTVIVSPNWPVRLMEVLQNSPLLPNMGVTGPTDSQNEKIFTHSFTHR 123          
BLAST of mRNA_C-tenellus_contig7514.1.1 vs. uniprot
Match: A0A7S0SZW8_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SZW8_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 4.730e-20
Identity = 42/75 (56.00%), Postives = 51/75 (68.00%), Query Frame = 1
Query:    1 QGAPSRAVSRLVAQANQDGADYMYQINDDTIFITPRWAEVFATALRDNPLGRNVGVTGPVDTNNKRILTHAFVHR 225
            QGAP++ VS+LV  A  D  DY YQ+NDDT+ +TP W       L  NP   N GVTGP DTNN++ILTH+FVHR
Sbjct:  372 QGAPTQVVSQLVLTAYVDNFDYFYQVNDDTMIVTPNWVPKLVEKLASNPSIPNFGVTGPTDTNNEKILTHSFVHR 446          
BLAST of mRNA_C-tenellus_contig7514.1.1 vs. uniprot
Match: A0A7S2SID6_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SID6_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 8.130e-19
Identity = 39/74 (52.70%), Postives = 50/74 (67.57%), Query Frame = 1
Query:    4 GAPSRAVSRLVAQANQDGADYMYQINDDTIFITPRWAEVFATALRDNPLGRNVGVTGPVDTNNKRILTHAFVHR 225
            GAPS AVS L+ QA +DGA++++Q+NDD    T RW    A+ L  NP+   +G TGPVD +NKRI TH F HR
Sbjct:    1 GAPSWAVSNLMDQAYRDGAEWLFQLNDDAKLETQRWERALASVLASNPIHPFLGATGPVDASNKRIFTHVFTHR 74          
BLAST of mRNA_C-tenellus_contig7514.1.1 vs. uniprot
Match: A0A6V1PYQ3_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1PYQ3_HETAK)

HSP 1 Score: 82.4 bits (202), Expect = 1.080e-16
Identity = 41/74 (55.41%), Postives = 48/74 (64.86%), Query Frame = 1
Query:    4 GAPSRAVSRLVAQANQDGADYMYQINDDTIFITPRWAEVFATALRDNPLGRNVGVTGPVDTNNKRILTHAFVHR 225
            GAPS+ V+RL   A   G DY+YQINDDT   T +W   F  AL  NP+  N GVTGP D+ N +I THAFVHR
Sbjct:  215 GAPSQVVNRLAGLAYDAGFDYIYQINDDTEIETKQWHLKFMKALASNPVFPNFGVTGPTDSLNPKIFTHAFVHR 288          
BLAST of mRNA_C-tenellus_contig7514.1.1 vs. uniprot
Match: A0A7S2CTF8_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CTF8_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 1.750e-14
Identity = 37/74 (50.00%), Postives = 47/74 (63.51%), Query Frame = 1
Query:    4 GAPSRAVSRLVAQANQDGADYMYQINDDTIFITPRWAEVFATALRDNPLGRNVGVTGPVDTNNKRILTHAFVHR 225
            GAPS AV+ L+ +A  DGAD+++Q+NDD   +T  W      AL  N + R +GVTGP D  N RI TH FVHR
Sbjct:  165 GAPSWAVAALMKRAYDDGADWLFQLNDDARLLTLGWELRLTGALASNQVTRLLGVTGPTDLTNPRIFTHVFVHR 238          
BLAST of mRNA_C-tenellus_contig7514.1.1 vs. uniprot
Match: A0A7S0L5Z5_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0L5Z5_9EUKA)

HSP 1 Score: 72.4 bits (176), Expect = 1.760e-14
Identity = 32/66 (48.48%), Postives = 42/66 (63.64%), Query Frame = 1
Query:   25 SRLVAQANQDGADYMYQINDDTIFITPRWAEVFATALRDNPLGRNVGVTGPVDTNNKRILTHAFVH 222
            S L+ +A   G DY YQ+NDD   +T  WAE     LR NP   N+G+ GP+DTNN R++T +FVH
Sbjct:    3 SSLLQRACSGGCDYFYQLNDDIKLVTHGWAEELTETLRANPYLPNLGIAGPLDTNNARLMTQSFVH 68          
BLAST of mRNA_C-tenellus_contig7514.1.1 vs. uniprot
Match: A0A5B8IHQ6_9VIRU (Uncharacterized protein n=1 Tax=Mimiviridae sp. ChoanoV1 TaxID=2596887 RepID=A0A5B8IHQ6_9VIRU)

HSP 1 Score: 65.9 bits (159), Expect = 4.120e-11
Identity = 28/65 (43.08%), Postives = 41/65 (63.08%), Query Frame = 1
Query:   31 LVAQANQDGADYMYQINDDTIFITPRWAEVFATALRDNPLGRNVGVTGPVDTNNKRILTHAFVHR 225
            ++A+   D  DY+YQ+ DD   +T  W ++F   L+ N    N+GV GP D NNK+ILT +FVH+
Sbjct:  126 ILAKEAYDNCDYIYQVGDDIKILTSGWEDIFINKLKKN---NNIGVVGPTDINNKKILTQSFVHK 187          
BLAST of mRNA_C-tenellus_contig7514.1.1 vs. uniprot
Match: A0A0M0K959_9EUKA (Uncharacterized protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0K959_9EUKA)

HSP 1 Score: 63.5 bits (153), Expect = 3.610e-10
Identity = 35/74 (47.30%), Postives = 45/74 (60.81%), Query Frame = 1
Query:   10 PSRAVSRLVAQANQDGADYMYQINDDTIFITPRWAEVFATALRD-NPLGRNVGVTGPV-DTNNKRILTHAFVHR 225
            P  A + ++A A +DGADY+Y++NDDT F+   W     + LR  +P   NVGV GP  D  N RILTH  VHR
Sbjct:  125 PGPAFNFMMAAAWEDGADYLYRVNDDTQFVGTEWVGAAVSTLRGYSP--PNVGVVGPTCDEGNTRILTHDLVHR 196          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7514.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
D8LNG2_ECTSI1.870e-2975.34Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
A0A7S2MG38_9STRA1.000e-2158.11Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A482RTF1_9ARCH7.810e-2150.67Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A7S0SZW8_9STRA4.730e-2056.00Hypothetical protein n=1 Tax=Chromulina nebulosa T... [more]
A0A7S2SID6_9STRA8.130e-1952.70Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A6V1PYQ3_HETAK1.080e-1655.41Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A7S2CTF8_9STRA1.750e-1450.00Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S0L5Z5_9EUKA1.760e-1448.48Hypothetical protein (Fragment) n=1 Tax=Coccolithu... [more]
A0A5B8IHQ6_9VIRU4.120e-1143.08Uncharacterized protein n=1 Tax=Mimiviridae sp. Ch... [more]
A0A0M0K959_9EUKA3.610e-1047.30Uncharacterized protein n=1 Tax=Chrysochromulina t... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7514contigC-tenellus_contig7514:859..1083 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LNG2
Model size225
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.07e-30
EggNOG OGs2E2MC@1|root,2S9UJ@2759|Eukaryota
Cds size225
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790041.8886113-CDS-C-tenellus_contig7514:858..10831680790041.8886113-CDS-C-tenellus_contig7514:858..1083Choristocarpus tenellus KU2346CDSC-tenellus_contig7514 859..1083 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7514.1.1prot_C-tenellus_contig7514.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7514 859..1083 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7514.1.1

>prot_C-tenellus_contig7514.1.1 ID=prot_C-tenellus_contig7514.1.1|Name=mRNA_C-tenellus_contig7514.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=75bp
QGAPSRAVSRLVAQANQDGADYMYQINDDTIFITPRWAEVFATALRDNPL
GRNVGVTGPVDTNNKRILTHAFVHR
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mRNA from alignment at C-tenellus_contig7514:859..1083+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7514.1.1 ID=mRNA_C-tenellus_contig7514.1.1|Name=mRNA_C-tenellus_contig7514.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=225bp|location=Sequence derived from alignment at C-tenellus_contig7514:859..1083+ (Choristocarpus tenellus KU2346)
CAGGGAGCGCCCTCTCGGGCAGTCTCCCGGCTAGTAGCCCAGGCAAACCA GGACGGAGCAGACTACATGTACCAGATAAATGATGATACAATCTTCATCA CGCCTAGATGGGCGGAGGTGTTTGCCACAGCCCTGCGTGATAATCCACTT GGGAGAAATGTTGGTGTGACTGGACCTGTTGACACCAACAACAAGCGTAT TCTTACTCATGCCTTTGTACACAGG
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Coding sequence (CDS) from alignment at C-tenellus_contig7514:859..1083+

>mRNA_C-tenellus_contig7514.1.1 ID=mRNA_C-tenellus_contig7514.1.1|Name=mRNA_C-tenellus_contig7514.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=225bp|location=Sequence derived from alignment at C-tenellus_contig7514:859..1083+ (Choristocarpus tenellus KU2346)
CAGGGAGCGCCCTCTCGGGCAGTCTCCCGGCTAGTAGCCCAGGCAAACCA
GGACGGAGCAGACTACATGTACCAGATAAATGATGATACAATCTTCATCA
CGCCTAGATGGGCGGAGGTGTTTGCCACAGCCCTGCGTGATAATCCACTT
GGGAGAAATGTTGGTGTGACTGGACCTGTTGACACCAACAACAAGCGTAT
TCTTACTCATGCCTTTGTACACAGG
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