mRNA_C-tenellus_contig7512.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7512.2.1
Unique NamemRNA_C-tenellus_contig7512.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7512.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7512contigC-tenellus_contig7512:4370..6700 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size645
Hectar predicted targeting categoryother localisation
Exons3
Cds size645
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790041.8385122-CDS-C-tenellus_contig7512:4369..44851680790041.8385122-CDS-C-tenellus_contig7512:4369..4485Choristocarpus tenellus KU2346CDSC-tenellus_contig7512 4370..4485 -
1680790041.8499393-CDS-C-tenellus_contig7512:5531..59731680790041.8499393-CDS-C-tenellus_contig7512:5531..5973Choristocarpus tenellus KU2346CDSC-tenellus_contig7512 5532..5973 -
1680790041.8590927-CDS-C-tenellus_contig7512:6613..67001680790041.8590927-CDS-C-tenellus_contig7512:6613..6700Choristocarpus tenellus KU2346CDSC-tenellus_contig7512 6614..6700 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7512.2.1prot_C-tenellus_contig7512.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7512 4370..6700 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7512.2.1

>prot_C-tenellus_contig7512.2.1 ID=prot_C-tenellus_contig7512.2.1|Name=mRNA_C-tenellus_contig7512.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=215bp
GGGLFGGGKKGGGGGGGAAPPSDLLSAIRGGTNLKKTETVDKSVVRGGGG
LVPNGGGGGGGGGGGSSSTSYSPPPLPTGGGGMMGELANAMARRRGSGGG
GAFPGGEAASPPVPTPGSRGMPPPLPAPAPGGGGYGASNGGGGGYGGGSS
LASALASRQPGGGGGAGKGGYGGGGGANGSVSRAPQSPAGTVGEDRLLII
EEKLDKIMAHLGIR*
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mRNA from alignment at C-tenellus_contig7512:4370..6700-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7512.2.1 ID=mRNA_C-tenellus_contig7512.2.1|Name=mRNA_C-tenellus_contig7512.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2331bp|location=Sequence derived from alignment at C-tenellus_contig7512:4370..6700- (Choristocarpus tenellus KU2346)
GGGGGGGGGCTATTTGGTGGGGGGAAAAAGGGTGGAGGGGGGGGTGGAGG
TGCAGCCCCACCTAGTGATCTACTCTCTGCTATAAGGGTGAGCAGTCCAT
CCCTAAGTGTGACATGATGTAATGGGATGGAGTATGGAGGTCGGAGGATG
GTTGGGTTGGTGAAAGGTTGTGTTATGCAGCTTCAATTGTGTGCTGAAAT
GATGGGAGTTGATTTCGAGGTGGTTGAAGGAAATGTAATGGAAATCGCTG
CGGCTGTGTGAAATAGCACTAGAACTGCAGAGTGTGGCGGTGCACACATT
CTCTTTAATTGCGGATTCTTTGTATGCCTTTTTTTTTACCCCTCAGTGAG
TTGTAATTTCTCCTGTGCCTTTTGTAAGGGGCTCTTTTTTATCTCGACAG
TCTTCCAGAGTGAACAGGGTGGACTGTGGATCTTATGTACGCTTTTAATT
TTTTCTTGTAAATGTTTTGTTTACTGGGGTGCAGGGATGCTGCGGTCAAT
GAGGAACTCACCCGCAACCTTCATGCTCCAGTTACCTCTCTGGATCAGTT
TTCTCATTCCAACAGCAAGGTTCTATTGTGATCAGTGTGCGGCAGACCTC
AGAATTTGCACTCTACTTCTTGTGTGAGCATTGCAAATCTACACTCTCCC
CCTCCCTCCCTCCACCCCTCACCTTCTAGCCGACCTTTACCTCTCGATCC
TCTAAAAACGCTCCAATATAACTGAAGGGTGGCACAAACCTGAAGAAGAC
AGAAACTGTGGACAAGAGTGTGGTACGGGGGGGAGGTGGATTGGTTCCAA
ATGGAGGTGGCGGGGGAGGTGGTGGTGGTGGAGGATCTTCATCCACTTCT
TACTCTCCACCCCCTCTACCTACTGGTGGCGGGGGTATGATGGGTGAGCT
GGCCAATGCTATGGCCCGCAGAAGAGGATCTGGAGGTGGAGGGGCGTTTC
CAGGTGGAGAAGCAGCATCTCCCCCAGTACCCACACCTGGTAGCAGGGGC
ATGCCACCGCCGCTTCCAGCACCTGCACCTGGAGGTGGTGGGTATGGGGC
TTCAAATGGTGGTGGGGGGGGATATGGTGGAGGTAGCAGCTTGGCAAGTG
CTCTAGCCAGCAGGCAGCCAGGTGGAGGAGGTGGGGCAGGAAAGGGAGGT
TATGGGGGTGGTGGTGGAGGTGCACCCCCACTTCCGGGCAAGGTGAGCTT
TTGGAAGGGGTGTAAAGGTGTCTTGGAGGGGGGTCTGCAGGGAGGGGTTG
TACTAGGAAGAGATATATGTAAGGTGCCAGGGGACAGAGAAAATGTGTAA
CTTGTGTTGGCAAGCTGCAGTAGTAGGTGATCTCTCTCTCTCCCTGCTGA
ATGTTGGCTGTCATTTGAGGATGTACTAGTTGTGCTGCCTGAGAGAATTG
AGGGGTTTTTTGCCTATTCCATACTGATTTAGAGTTGAAAATAGCTTATA
AGTGAGGCCATTTGAATGGCTCCTTCAATTGCTTGGATAGAAACAGCATT
TCTTTGGTCATTCCAAGAGGCTGCTGAATTGGTTAATGTTTGGTTGCTTA
ATTATATGTAGTATGTCTTGAATGCCATCAGTAGAGAATGCCTCTGCCTC
AAGGGTCCAAGACCTAGGTAGAATAAACATCAATTGCTGGAGCCTCCAAG
ATCTTGTGCAGTCTGGGGAAAGGAAGTAGTGTTACAGGTCTAAATCACAA
CACCCTTGCCACTTTCAAAAGTTCCAATGTTTTTTTTATTTCATAGGATA
AGACTGCTTTTTGAAACCATGCTGAATACGGAAACTCCACTGTAGATTTT
TTTTGTTACACCAAAAAATCATAGCCAAACCAAGATATTACTCTTTTTTG
ATGGAACCAAATTTGGACACAATATTTAGAGTATTTGCTACAATGCAGCT
TGCTCCATAACTTTGTTTTGTCTCATAGGACAAAGGAAGGACTTGCTGGA
GTTTTTGTAGAGGTAGAATCAAAAGCAATGCTCCAGTGACCTATTTAGTC
AGCACGGTTTGTGACTATCATATCTAATCAATCTGTCCCACAAATTTACA
CTATTGTGAAAGCAATAGGGATGAGAAACTGCAGTGGCTGCCCTCAGTCT
ATCCTTCAAGTCACAATCTCACCCCTGTATATTCCCTACCTCGCCATGCA
GGGGCCCCCACCAATCCCTGGGAAGATGCCAACCACTACGCCCCCATCGA
GCTACAGCAACGGAGCCAATGGAAGTGTATCCCGTGCACCACAATCACCA
GCTGGCACAGTGGGGGAGGACCGCCTCTTGATAATAGAAGAGAAGCTTGA
TAAGATCATGGCTCACCTAGGGATACGTTGA
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Coding sequence (CDS) from alignment at C-tenellus_contig7512:4370..6700-

>mRNA_C-tenellus_contig7512.2.1 ID=mRNA_C-tenellus_contig7512.2.1|Name=mRNA_C-tenellus_contig7512.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=645bp|location=Sequence derived from alignment at C-tenellus_contig7512:4370..6700- (Choristocarpus tenellus KU2346)
GGGGGGGGGCTATTTGGTGGGGGGAAAAAGGGTGGAGGGGGGGGTGGAGG
TGCAGCCCCACCTAGTGATCTACTCTCTGCTATAAGGGGTGGCACAAACC
TGAAGAAGACAGAAACTGTGGACAAGAGTGTGGTACGGGGGGGAGGTGGA
TTGGTTCCAAATGGAGGTGGCGGGGGAGGTGGTGGTGGTGGAGGATCTTC
ATCCACTTCTTACTCTCCACCCCCTCTACCTACTGGTGGCGGGGGTATGA
TGGGTGAGCTGGCCAATGCTATGGCCCGCAGAAGAGGATCTGGAGGTGGA
GGGGCGTTTCCAGGTGGAGAAGCAGCATCTCCCCCAGTACCCACACCTGG
TAGCAGGGGCATGCCACCGCCGCTTCCAGCACCTGCACCTGGAGGTGGTG
GGTATGGGGCTTCAAATGGTGGTGGGGGGGGATATGGTGGAGGTAGCAGC
TTGGCAAGTGCTCTAGCCAGCAGGCAGCCAGGTGGAGGAGGTGGGGCAGG
AAAGGGAGGTTATGGGGGTGGTGGTGGAGCCAATGGAAGTGTATCCCGTG
CACCACAATCACCAGCTGGCACAGTGGGGGAGGACCGCCTCTTGATAATA
GAAGAGAAGCTTGATAAGATCATGGCTCACCTAGGGATACGTTGA
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