mRNA_C-tenellus_contig7500.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7500.1.1
Unique NamemRNA_C-tenellus_contig7500.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig7500.1.1 vs. uniprot
Match: A0A6H5KJ76_9PHAE (DUF1981 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ76_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 4.090e-8
Identity = 77/221 (34.84%), Postives = 101/221 (45.70%), Query Frame = 1 
Query:   22 TGRDAPWDGTELARRVLMREGEALVQRYMEVDGEMCLRQQSRGESSDSSSDGGIGHSDVEEGNKEGGDGDESISGETNNLPQGSKERKDSGGRTQPM--LVLGALLQPP-STPLQRNGLPSTPLSVTSLGTT---AGGTRGRIGTGVGTM------MDLALTKREEVRHLVPAMLLLLKGLLLL-PSERFAAEAPWVYPILVDLVGARDPTVRGLVRELLR 645
            +G  A WDGT LA   L REG  ++ RY E DGE  +++ S  +   SS+D     S V                 ++  P    + +       P    V  +   P  ST  + +   STP S+ S GT        R     G+G         +L  +   EVRHL PA+LLLL+GLLLL P+E F  EA W+ P L DLV  R   VR +VRELLR
Sbjct: 1084 SGGAAGWDGTTLALEFLRREGGNILVRYFEADGE--VQRASLEDHMWSSADDTAAASAVPS---------------SSFAPPSPSQHRGGFSVESPSRHTVTSSSFSPTASTGSRAHQQASTPRSMGSGGTRRPPGAAPRPPAAGGLGPQHQQREPANLVASTEAEVRHLTPAVLLLLRGLLLLQPAEAFDREAGWLCPRLADLVVVRSLEVRAVVRELLR 1287
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BLAST of mRNA_C-tenellus_contig7500.1.1 vs. uniprot
Match: D8LFA1_ECTSI (BIG2, ArfGEF protein of the BIG/GBF family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFA1_ECTSI)

HSP 1 Score: 61.6 bits (148), Expect = 7.910e-6
Identity = 35/64 (54.69%), Postives = 43/64 (67.19%), Query Frame = 1 
Query:  454 MDLALTKREEVRHLVPAMLLLLKGLLLL-PSERFAAEAPWVYPILVDLVGARDPTVRGLVRELL 642
            ++L  +   EVRHL  A+LLLL+GLLLL P+E F  EA W+ P L DLV  R   VR +VRELL
Sbjct: 2260 VNLVASAEAEVRHLTSAVLLLLRGLLLLQPAEAFDREAGWLCPRLADLVVVRSLEVRAVVRELL 2323
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7500.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KJ76_9PHAE4.090e-834.84DUF1981 domain-containing protein n=1 Tax=Ectocarp... [more]
D8LFA1_ECTSI7.910e-654.69BIG2, ArfGEF protein of the BIG/GBF family n=1 Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7500contigC-tenellus_contig7500:65..3181 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LFA1
PFAMsDCB,DUF1981,Sec7,Sec7_N
Model size2593
Max annot lvl2759|Eukaryota
KEGG koko:K18442
KEGG Pathwayko04144,map04144
Hectar predicted targeting categoryother localisation
Exons2
Evalue8.89e-08
EggNOG OGsCOG5307@1|root,KOG0929@2759|Eukaryota
Ec32 ortholog descriptionBIG2, ArfGEF protein of the BIG/GBF family
Ec32 orthologEc-01_004200.1
Descriptionregulation of ARF protein signal transduction
Cds size669
COG categoryK
BRITEko00000,ko00001,ko04131
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790040.0922236-UTR-C-tenellus_contig7500:64..761680790040.0922236-UTR-C-tenellus_contig7500:64..76Choristocarpus tenellus KU2346UTRC-tenellus_contig7500 65..76 +
1680790040.226524-UTR-C-tenellus_contig7500:1269..31811680790040.226524-UTR-C-tenellus_contig7500:1269..3181Choristocarpus tenellus KU2346UTRC-tenellus_contig7500 1270..3181 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790040.1059594-CDS-C-tenellus_contig7500:76..2101680790040.1059594-CDS-C-tenellus_contig7500:76..210Choristocarpus tenellus KU2346CDSC-tenellus_contig7500 77..210 +
1680790040.1174264-CDS-C-tenellus_contig7500:734..12691680790040.1174264-CDS-C-tenellus_contig7500:734..1269Choristocarpus tenellus KU2346CDSC-tenellus_contig7500 735..1269 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7500.1.1prot_C-tenellus_contig7500.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7500 77..1269 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7500.1.1

>prot_C-tenellus_contig7500.1.1 ID=prot_C-tenellus_contig7500.1.1|Name=mRNA_C-tenellus_contig7500.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=223bp
MKATGRDAPWDGTELARRVLMREGEALVQRYMEVDGEMCLRQQSRGESSD
SSSDGGIGHSDVEEGNKEGGDGDESISGETNNLPQGSKERKDSGGRTQPM
LVLGALLQPPSTPLQRNGLPSTPLSVTSLGTTAGGTRGRIGTGVGTMMDL
ALTKREEVRHLVPAMLLLLKGLLLLPSERFAAEAPWVYPILVDLVGARDP
TVRGLVRELLRTKVTFLLPFMM*
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mRNA from alignment at C-tenellus_contig7500:65..3181+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7500.1.1 ID=mRNA_C-tenellus_contig7500.1.1|Name=mRNA_C-tenellus_contig7500.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=3117bp|location=Sequence derived from alignment at C-tenellus_contig7500:65..3181+ (Choristocarpus tenellus KU2346)
GGAAAGGGGTCGATGAAGGCCACGGGAAGAGATGCGCCCTGGGATGGCAC
AGAATTGGCACGAAGGGTTTTGATGCGGGAGGGGGAGGCGTTGGTACAAC
GGTACATGGAGGTTGACGGGGAGATGTGCCTTCGACAGCAGTCAAGGTGC
AGTGGCAGATGGAGAACTATTTGGGGAGGGGTAGTATGTGCTTGAGGATG
CATTGGGATGTATGTATATATGCACATGTTGTTGTTGATGAGGCTGAGCA
AACTGAGAAGATTTCTTGGAACGTTGTTGTGGTTTTTGCGACTGTTGTTC
GCTGGTGGGAATGGAAATACGGTTACAATGTGTCCTTTGTGGTCAAGTAT
GTAGGTGGGAATGGAAATACGATTACAATGTATCCTTTGTGGTCAAGTAT
GTAGGTGGGAATGGAAATACGATTACAATGTGTCCTTTGTGGTCAAGTAT
GTAGGTGGGATGGGTCAGGAAAGACATATATATAACCCTTCCTCGATTGT
TGTGTCCTCTCAATAGACTCTTCCTATGTTTGTCCTCCTCTATGTTTTTA
TTCTGCATTCATCTCACCGCACAACCTTACTGTCATTCCTGTTGATGCCC
TTTCATATGTGTGTGTCTGCCTGGGGTCGGTTGGGGTGGGGGATTGGGGT
GATCAATGTCGACTTGAAAGGGGTGAAAGTAGTGACTCCTCATCAGATGG
TGGGATAGGTCACTCTGATGTTGAGGAGGGTAACAAAGAAGGCGGCGATG
GCGATGAGAGCATCAGTGGCGAGACCAACAACCTACCTCAAGGTTCCAAG
GAGAGAAAGGATAGTGGGGGTCGTACACAGCCTATGCTGGTACTGGGTGC
ACTGCTACAACCGCCTTCCACCCCACTACAACGGAATGGGCTTCCTTCAA
CACCATTGAGTGTCACCTCTCTGGGTACCACGGCTGGCGGAACGAGAGGG
AGGATTGGGACCGGAGTGGGGACAATGATGGACCTTGCGCTAACAAAAAG
GGAGGAAGTACGACATCTGGTTCCTGCCATGTTGCTCCTGCTGAAGGGCT
TGTTGCTGCTCCCATCAGAGAGGTTTGCGGCTGAGGCCCCGTGGGTGTAT
CCGATCCTGGTGGACCTGGTTGGGGCAAGGGATCCCACCGTGCGGGGGTT
GGTGAGGGAGCTACTTAGGACTAAGGTTACTTTCCTTTTGCCTTTTATGA
TGTAGGGGGTGAGAGACGGCGTGGGTGGGAGGGGGTGGTCGAGGGGTTGT
CAGTTTTTGGTGTAATAGACTGATGGATATGATGTGCTGGGGGGGACTAT
GTGAGAGAGAACCGGAGGGGGGGGTGGTAACAACGATGTGGATCATATGT
GTGTCATGTGTTTGGCATCAATGCATGTTCTCTCTCTCTCTCAGTAGCCG
GGATCAATTTTTGCGTCAACATTATTTTTTTTAGATTAGTGTTATTTTAA
GGGGGTGTGCATGGATTTTCCAGCTACGAAGGAGGGGGCCCAGAGAGGCA
CAAGGTGTCTGTAGTAAGTGTGTGCTCTAGAATTGGACTAGTGCTCCTGA
TTGGTGGATAGATCCGTGTGGGTGACATGAATGGCAGATGTGGTGTCACT
CTTTAGCTTCTCGTTGTTGCTCCTGTGCTCAGTGCTTACATCTTACGTCC
CCTCTGTGTGGTCTGAAGTATGGCTTGCTCAACAGTTTTGAAGTATCAAA
TGCTTTGTCAGCTGTAGAGCAAGGAAGACTTTGATGCCTGGGTGATGAGG
ATGCTCATTTTTACACATTAGTGGGGGTGTGCCTTGTGCCTTGCTAATGG
CGAAGGGGGGGATTTGGAAGAAGATTGTCCATCAATCACCAACCCATCAG
GTATGGTCTGGATTTTGGTCGAGGGAGAGTAAGGAAGGTGGGAGGAGGGG
GGGGCAGGGGTGACTGGCTGTCGTGCGCAAGGTTGGTGTGATAGGGCAGC
ATCTCCTTCTCCCAGTACCATAGTTATCAGGACTGAGAAGGATGGGCAAA
GCAATGGAAAACAGAGGGGAGGAGCGTATACTGCACAGTAGCCCTGTGTT
TAGGAGTACCAGGTCTTCCAAGTTTATGCATCAAATTGTGGACTGGCTGA
TTTGGTGTTGCCTGGTATACTTTATCAGGAACCAACTGCCTACCACCTGA
AAGGAGTTAGGGTTAGGTTTTGGGCGAATGATACCATCAGGCGTTTATGA
GCAATGGTGTATGCTACATAGTATGTGCGTGTGAGTAAATGGGTTGGTTG
CCTGTCATGACTCTCGGTTATTTATCCTGAACCTCGCTTGAGAAGAGTTT
GATGTGCTGAACTCCTTCAAGTGGTTCGGAATTGTGTTCTCACCTGGAAC
ACTTGCTTGCTGGGAGGGGGGAGGGGGGTTCTTGGTTTGTGCTTCGCTTC
CAGATGGTGTAGCCACGACAGCCTACATGCTGTCTCTTAGGTGCATTTTA
GAGAAGCGATCATATACTTCAGAAGTATGTCTTCTTTTTCTCCTTGCTCG
TTACACTTCTTTGTATCTTGCTGGTACTACTACTACTGCGGGTCCGTTTT
CTGCTTCAAGTTTATTATAAGCACAATCTCTGGATCAATCATTAGAACAA
TTTTTGGTGTGTACCACTAGCATTCAGCTCTTACATGGGTACTCTTGATT
TGGGGTAAGGAGGAGGATTTTTTATGTTTTGTTTTCTTGTACTTAAGAGG
AGCACCGACTGCATTTGGTAGGCTGACATGACACCAAAGCTGTACGTTAG
GCATTTTCATAGTAGAACGTGCTCATGTTCCACCCCTTTGTTTCCTCTCC
TAGCTACTGTGTACTTTGGAGTATGTTATTGATTGATTTGCTAGGTTCCG
GTGTTTGCTACTATTCATATTAGAGCAAAGGGATGAAAGAAAGTGACCCC
ACTTGGGAAACCCAGTGTTGTTGTGTGACCATCATGTTGTTGACTGAATG
AAAGTGAACGGATTGAGAAACAAAAACAAAAAGTTCCCAATGCTACCTCC
TTGCAATTAGGCGATGATGAGATCTCTCGAGATTTGGGTGGTCATACAAG
GGTGAGGTGTAAGGGATAAGCTAAGAGGGAAGCACGACAATCGAAATACA
TGTGAATAGAAATAGGG
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Coding sequence (CDS) from alignment at C-tenellus_contig7500:65..3181+

>mRNA_C-tenellus_contig7500.1.1 ID=mRNA_C-tenellus_contig7500.1.1|Name=mRNA_C-tenellus_contig7500.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=669bp|location=Sequence derived from alignment at C-tenellus_contig7500:65..3181+ (Choristocarpus tenellus KU2346)
ATGAAGGCCACGGGAAGAGATGCGCCCTGGGATGGCACAGAATTGGCACG
AAGGGTTTTGATGCGGGAGGGGGAGGCGTTGGTACAACGGTACATGGAGG
TTGACGGGGAGATGTGCCTTCGACAGCAGTCAAGGGGTGAAAGTAGTGAC
TCCTCATCAGATGGTGGGATAGGTCACTCTGATGTTGAGGAGGGTAACAA
AGAAGGCGGCGATGGCGATGAGAGCATCAGTGGCGAGACCAACAACCTAC
CTCAAGGTTCCAAGGAGAGAAAGGATAGTGGGGGTCGTACACAGCCTATG
CTGGTACTGGGTGCACTGCTACAACCGCCTTCCACCCCACTACAACGGAA
TGGGCTTCCTTCAACACCATTGAGTGTCACCTCTCTGGGTACCACGGCTG
GCGGAACGAGAGGGAGGATTGGGACCGGAGTGGGGACAATGATGGACCTT
GCGCTAACAAAAAGGGAGGAAGTACGACATCTGGTTCCTGCCATGTTGCT
CCTGCTGAAGGGCTTGTTGCTGCTCCCATCAGAGAGGTTTGCGGCTGAGG
CCCCGTGGGTGTATCCGATCCTGGTGGACCTGGTTGGGGCAAGGGATCCC
ACCGTGCGGGGGTTGGTGAGGGAGCTACTTAGGACTAAGGTTACTTTCCT
TTTGCCTTTTATGATGTAG
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