mRNA_C-tenellus_contig7497.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7497.2.1
Unique NamemRNA_C-tenellus_contig7497.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig7497.2.1 vs. uniprot
Match: D7FHG6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHG6_ECTSI)

HSP 1 Score: 85.5 bits (210), Expect = 1.330e-18
Identity = 53/107 (49.53%), Postives = 67/107 (62.62%), Query Frame = 1 
Query:   10 ARVLMLATVVNCLLVQSMAFVIVGVGPGVRV----SGGRATNVHVGRRGARSQPLRAASDD-GEEGGFVNPYTAFRKWQMELIDSKARSDPKFEDAVAGLMTEKGMT 315
            +RVL +A  V CL+  + AFV  G G  VR     S G+  +V    +    Q L A+ +  GEE GFVNPYTAFRKWQM+LI+SKA+ D K+ +A AGLM E GMT
Sbjct:    4 SRVLCVAAAVACLVSTAAAFVASGGGHAVRTRAATSAGQQQHVQPAIQQRGVQVLGASEEGAGEERGFVNPYTAFRKWQMDLIESKAKGDEKYPEAFAGLMKEPGMT 110
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7497.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FHG6_ECTSI1.330e-1849.53Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7497contigC-tenellus_contig7497:1012..1938 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size321
Hectar predicted targeting categorysignal peptide
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-25_002480.1
Cds size321
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790039.2383378-CDS-C-tenellus_contig7497:1011..10921680790039.2383378-CDS-C-tenellus_contig7497:1011..1092Choristocarpus tenellus KU2346CDSC-tenellus_contig7497 1012..1092 -
1680790039.2480931-CDS-C-tenellus_contig7497:1698..19381680790039.2480931-CDS-C-tenellus_contig7497:1698..1938Choristocarpus tenellus KU2346CDSC-tenellus_contig7497 1699..1938 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7497.2.1prot_C-tenellus_contig7497.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7497 1012..1938 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7497.2.1

>prot_C-tenellus_contig7497.2.1 ID=prot_C-tenellus_contig7497.2.1|Name=mRNA_C-tenellus_contig7497.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=107bp
MVLARVLMLATVVNCLLVQSMAFVIVGVGPGVRVSGGRATNVHVGRRGAR
SQPLRAASDDGEEGGFVNPYTAFRKWQMELIDSKARSDPKFEDAVAGLMT
EKGMTK*
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mRNA from alignment at C-tenellus_contig7497:1012..1938-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7497.2.1 ID=mRNA_C-tenellus_contig7497.2.1|Name=mRNA_C-tenellus_contig7497.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=927bp|location=Sequence derived from alignment at C-tenellus_contig7497:1012..1938- (Choristocarpus tenellus KU2346)
ATGGTTCTTGCACGGGTGCTCATGCTTGCAACAGTCGTGAACTGTCTCTT
GGTTCAATCAATGGCATTTGTTATTGTGGGAGTAGGACCGGGAGTGCGAG
TGTCTGGTGGACGTGCAACCAATGTTCATGTTGGACGACGTGGCGCAAGG
AGTCAGCCACTGAGAGCTGCGAGTGATGACGGAGAGGAGGGTGGATTCGT
AAATCCTTATACTGCTTTCCGCAAGTGGCAGATGGAACTGGTGAGAGTGT
TGCGGTGTTCTGAAAGTAGGACTGGTTTGTTTTCTGGTAGAAGTCTGCAT
TCGTTGTGTTGATTTACGATGATGAATAGGGCGGTCAGGCGTGATTAGAT
GCACTTGTTGTGCACTTCTTCGACGGTGTGTATCTGGCTCTTATGCTTTA
TTGGGGGGAAGTGCACAAAGGATCGCAGTGATTGTCCTTGAAGGGGTGTG
AGGGACTCACTCACTTGAGCACAGTTGTTTTCACGACCCCATGAGTATAT
TGTGTACATCGTTGTCTTCCCCGTGTCCATATCGTCGTGCGTTTTAACTG
TGATGCTATTCGTATGGTATTAGGTCGACTTTACCAATATGCAGGCCTGA
TCTCCACCTTTCACCTTTGATAGGCGTGCAATCTGTCGACCCTCGCGTGT
TTGGGTGACTCCTTCTAACTTGGCATTTCCCGATCCACATTCGCTAGAGT
AAATGCAATGGAATATGCCGTTGCTTGGAGAGAAAAACATAAAACCAACA
AAGCCATGCCCTCCTTATAGTATTCACACTTTATCCAACACTGATCTTTC
AACCACCACCTCTTCCTCTAATAAAACTGTACCATATCGGTTACAGATTG
ATTCCAAGGCACGTAGCGACCCCAAATTCGAAGACGCCGTTGCGGGATTG
ATGACAGAAAAGGGGATGACCAAGTGA
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Coding sequence (CDS) from alignment at C-tenellus_contig7497:1012..1938-

>mRNA_C-tenellus_contig7497.2.1 ID=mRNA_C-tenellus_contig7497.2.1|Name=mRNA_C-tenellus_contig7497.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=321bp|location=Sequence derived from alignment at C-tenellus_contig7497:1012..1938- (Choristocarpus tenellus KU2346)
ATGGTTCTTGCACGGGTGCTCATGCTTGCAACAGTCGTGAACTGTCTCTT
GGTTCAATCAATGGCATTTGTTATTGTGGGAGTAGGACCGGGAGTGCGAG
TGTCTGGTGGACGTGCAACCAATGTTCATGTTGGACGACGTGGCGCAAGG
AGTCAGCCACTGAGAGCTGCGAGTGATGACGGAGAGGAGGGTGGATTCGT
AAATCCTTATACTGCTTTCCGCAAGTGGCAGATGGAACTGATTGATTCCA
AGGCACGTAGCGACCCCAAATTCGAAGACGCCGTTGCGGGATTGATGACA
GAAAAGGGGATGACCAAGTGA
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