mRNA_C-tenellus_contig7477.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7477.1.1
Unique NamemRNA_C-tenellus_contig7477.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig7477.1.1 vs. uniprot
Match: D8LHR1_ECTSI (LTD domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHR1_ECTSI)

HSP 1 Score: 126 bits (316), Expect = 1.730e-26
Identity = 115/370 (31.08%), Postives = 157/370 (42.43%), Query Frame = 1 
Query:    1 QVLRLRTVVLFLCYFRLACLCWAGCHAAKSSSAISKENQSYLNPNLFIGVLILGHMLDLLARWVSRQPGLPMDSFAVALSTLGDRLASLVLVGAIILLDTDPRHRVLFASILSLELGSYWLQMVVAAGRASPPPIRIRGESFVDNGNGDTGIGAGLGWAGDVGEGRNSIGGSSVGGRRGCGGWGGCLLRKSDAVRMDFVGHLMLRQPGLLTLVSFGSEAFLFLSY-------------------SFLPAV--SALLRYSPACYIGTPATFY----------------------DYGAFS--------STALG-GRGLSGEMEEAVTGAPGVDAMFFSPILTWWLRPAWMALMVCCGVRQLINVVQVCTYM 954
            QVL LRT+VL LCY RL C    G  AA+ +          ++P++F+ V  L H+ D+L+RW S +PG+PMD F V L+T+GDR + LVL+G+++LLD DPRH  +F  +L+L++ + WLQ+ VA+                                  +  G + + G+ V GR                   DF  H+ML  P  LTLVS GSEAFL  SY                    FL ++    L  +SP+                                D G F         S ALG G  L   + EA     G      SP  T W +  WM LMVCC  RQL++ +Q    M
Sbjct:  179 QVLALRTLVLSLCYLRLVC---TGLAAARVT----------VHPDVFLLVTALAHVFDILSRWASSRPGVPMDDFGVVLATMGDRFSYLVLLGSLVLLDKDPRHSQIFGGMLALDMTANWLQLSVAS----------------------------------ISNGSHPLAGTLVSGR---------------GAAPDFATHIMLTHPVELTLVSLGSEAFLVWSYLVASSDLPLGLRAMVAKAGDFLSSLFTELLSSFSPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDGGVFGGFEPNRIDSAALGLGEDLG--VREAEDDGDG------SPFSTAW-KAVWMTLMVCCAARQLLSCIQALISM 477
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7477.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LHR1_ECTSI1.730e-2631.08LTD domain-containing protein n=2 Tax=Ectocarpus T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7477contigC-tenellus_contig7477:182..6461 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LHR1
PFAMsLTD
Model size3685
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal anchor
Exons4
Evalue7.06e-16
EggNOG OGs28XRH@1|root,2R4IT@2759|Eukaryota
Cds size804
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7477.1.1prot_C-tenellus_contig7477.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7477 347..3745 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790038.0922086-UTR-C-tenellus_contig7477:181..3461680790038.0922086-UTR-C-tenellus_contig7477:181..346Choristocarpus tenellus KU2346UTRC-tenellus_contig7477 182..346 +
1680790038.1479917-UTR-C-tenellus_contig7477:3745..64611680790038.1479917-UTR-C-tenellus_contig7477:3745..6461Choristocarpus tenellus KU2346UTRC-tenellus_contig7477 3746..6461 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790038.1089725-CDS-C-tenellus_contig7477:346..3661680790038.1089725-CDS-C-tenellus_contig7477:346..366Choristocarpus tenellus KU2346CDSC-tenellus_contig7477 347..366 +
1680790038.1192431-CDS-C-tenellus_contig7477:1278..13401680790038.1192431-CDS-C-tenellus_contig7477:1278..1340Choristocarpus tenellus KU2346CDSC-tenellus_contig7477 1279..1340 +
1680790038.1297102-CDS-C-tenellus_contig7477:2632..30211680790038.1297102-CDS-C-tenellus_contig7477:2632..3021Choristocarpus tenellus KU2346CDSC-tenellus_contig7477 2633..3021 +
1680790038.1389785-CDS-C-tenellus_contig7477:3412..37451680790038.1389785-CDS-C-tenellus_contig7477:3412..3745Choristocarpus tenellus KU2346CDSC-tenellus_contig7477 3413..3745 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7477.1.1

>prot_C-tenellus_contig7477.1.1 ID=prot_C-tenellus_contig7477.1.1|Name=mRNA_C-tenellus_contig7477.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=268bp
MLDLLARWVSRQPGLPMDSFAVALSTLGDRLASLVLVGAIILLDTDPRHR
VLFASILSLELGSYWLQMVVAAGRASPPPIRIRGESFVDNGNGDTGIGAG
LGWAGDVGEGRNSIGGSSVGGRRGCGGWGGCLLRKSDAVRMDFVGHLMLR
QPGLLTLVSFGSEAFLFLSYSFLPAVSALLRYSPACYIGTPATFYDYGAF
SSTALGGRGLSGEMEEAVTGAPGVDAMFFSPILTWWLRPAWMALMVCCGV
RQLINVVQVCTYMWTSL*
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mRNA from alignment at C-tenellus_contig7477:182..6461+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7477.1.1 ID=mRNA_C-tenellus_contig7477.1.1|Name=mRNA_C-tenellus_contig7477.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=6280bp|location=Sequence derived from alignment at C-tenellus_contig7477:182..6461+ (Choristocarpus tenellus KU2346)
CAGGTCCTTCGTCTGCGGACTGTGGTGCTTTTCCTGTGCTATTTTAGGTT
GGCCTGTTTGTGCTGGGCAGGCTGCCATGCAGCAAAGAGTTCTTCTGCGA
TCAGCAAGGAGAACCAAAGTTATTTGAACCCTAACCTTTTCATTGGTGTG
CTGATTTTGGGGCATATGCTGGATCTGCTGGCAAGGTACGCAGTAGTTCG
TAGAGAGTAGGAGAGGCATTCCTATGGATGTTTTATTTTGTGCTTTTGGT
CAAGATATATTGCCGTGCTGCCAAGAGGGTGTTGAAATATGAACAATATT
CCTACGTGAAAAGGAGCATGAGATAAGCAAATATGGTGTTAGGTGTAACA
GTCCATTCTGTCTACCTTGAAAAAGTTGATATTCATCTCCATGCCAACAT
GACGTGATAGCCATTTCTGTGCTTCAAGTGGAATGTGTAGAAACATGAAA
CAATGTTGCTGAAGAAGGGATGGAAGGGCACTTCATTTTCCTTTGATCTG
CTGCATGTAGTACTACCTCAAAACACAATGGTGTGTATCCATCCTACCTC
CGAACACACACACGATAACCTATGTAGGAATAGAATCATTTTCATCTCTC
GTTTGAATTTAATCGTTCTGAAAAATCAGAGGCACAATGTCCGACTACTT
GCTTGTAGCACTTCATTGTCATAGACTCTTGGATCTCTGATCTCCCTTGA
CTACATCTTTGTGGAAGCATCACGCGTATCGATTATTTTTATTTCATTAT
CATTATTCGATACACCTTGGCGTTAGTTTTTGTGTTGAAAAAGATGAAGC
CATCTGTTACGAATTGGTATTTTGATTTACTATTTACATATGCTGTAGTG
AACAGGACAATTTTGATCAAGTAAAATGTGATTTTCTTATTTTTATACAA
TTCGTCAACCCCACAAATATAATAAAGCGCTCCTGATTTATAGGTGCAGC
AATATACCCCTGTTGTGTATCTGGCAGAGTGTAGATACATACTTGGACGA
TGCAAGCAAAGTTCCTTCCCACTCCATCTCCCGACCTAGTTCTGACCCTG
CCATATCCTCTAAAAATGCGATGGCCATTGTTGTGGTCCCTTGAAAGGTG
GGTATCTCGGCAACCTGGGCTCCCCATGGACAGCTTTGCTGTTGCTCTTT
CCACGCTAGGTGAGACATAGGGTATACCTCATTTGGAATGCAATTTCACT
ACTAGTATACTATAGGGAAGGTGAAGAATTTCAGTATGTTAAGGGAATAG
GGAGATTGTACTAGAAGGATAGGAAGTGCATGTAATTAAAACACCTAATG
CTTCAGAGTTTTGAATAGAGTAAAAGCCTTTGCAATGCATTGTTCATATT
TTGTCAATAAGTAATAAAATGCGTTCAGCCTGAAACCCTCTGAATCCCTC
AAGTTCTCTGGTGCCGCTTGGTGATGCTGGCGGGTACTACAGGTCTGAAT
CGGATACCCATTCATTATTTTGTTGTAGTATGCCAACCTGCCTTGGTACA
TGCTCACAGTACGGTATAATTCAGTAATGTACATAACCAGAGTATTTTGG
TACTAAAAATGTCTTTTTTTTCTTTGTATTAGGAAGTATCACATGATACA
GTAGTGGTATATTGTAGTACGCAACATATGTTTTAGTGTTAGTGCCAGGT
AGTATAGTGCAGTAGTTCAGTACTTGGGTATTTTAGTACCCAAAGGTAAA
TTTAGCCTTGGCACCTGGTAATTCAGTGTAGTAGTACAGGACCAGAGTAT
TGCAGCAACTCAAGGTATTTGAACCTCGGTATGATACCATGCAGTATGGC
ACAGTACCAAAGCATGTCAATGAAAAGGTGTATATTTGTGAGATAACATG
GACAGTTTTGAGGAAGGAAACAGGGCCCTTACTTTTGGCAAGCTGCCGAC
TACTTTGAAATATTCCTGGTTTCCAACGAGAAACTGAGGGTTAATGGACA
ACAGTACTTTATTGCCGACAATATAAGGCATAACTTAAGTACTGCTTCTT
GCGATCATAATGTACTGTCAATTGAGCCATAACTCAAACATGCCGAACTG
TGTGTCAGTTGATGGGGCTCTTCTTGTGTGCGACGCGCTACTGGGGTTGC
TGTTCAAGGCGTGTTGCATGATACAGTCTGCTCTTTGATCTCTGTCTTGC
AAGCAACCATTTCAGAATTCCAGTTTTAGAGTTATACTTTATTTTTTGTA
ACCCTGGTCCCATCTTTACTTTTAAGCATATGTATGCTGTTCACTTCGGA
TGAATATTCTTATTTGCAACACTTTTCATATCTTTCCCCTCCTCACCCCT
GTGATTGTTCGATTACATTTCTTCTTTCCAGCAGTACGAAAATATCTTAC
AACCGAACTCCAACTTTGCTTCTTGAACAATAGTGCGCAGTATTTTTTGT
TTAATTTGTACTAGGTGCATCCCTCAGCACTCTCTTTTTGTTCTGCGATA
GGTGATCGCCTTGCCTCCCTAGTGCTGGTGGGCGCCATAATCCTTCTGGA
CACAGACCCCCGCCACCGTGTCCTCTTCGCCTCCATCCTCTCATTGGAAC
TGGGATCGTACTGGCTGCAGATGGTGGTTGCTGCAGGAAGAGCTTCTCCC
CCCCCCATCCGCATCAGGGGGGAAAGCTTTGTGGACAATGGTAATGGAGA
CACTGGTATTGGGGCAGGCTTGGGCTGGGCTGGCGATGTTGGAGAAGGGA
GGAATAGCATTGGAGGGAGCTCGGTTGGAGGGAGGAGAGGATGTGGAGGG
TGGGGGGGGTGTCTGCTAAGAAAGAGTGATGCTGTGAGGATGGACTTTGT
TGGGCACCTCATGTTGAGGCAGCCAGGACTACTCACGCTGGTGGGTGTGG
GGTATACAAGTTGTGTGTGCTTAGTACACTGTAAAAAGGAGGGGTAGATT
GGTTTCCTGAAGAGAGGGTATGGTGATGTATGTGTGTGGGAATTAATGTG
CTATTGTGTGATTGTTTTCTTTCATGTCTCAAGGATCTGGAAGTTCCGTG
GCATATGCAAGTTGTTGCTGTAGTACTGTGATGCCCAGAGCCCCCCCCCT
CCCCCTCTGGGTCCATTCATGGTCACGTGTATTAACAGTTGGATTTTATG
CATGTGTGGACTGGGCATGGTGATTGTGCTTGTTCAGAATGGGTACAGCT
CATCCTTACAATGCACACAGACCTCATCACTGCATCTCTGCAACTCCCGT
CTCCTCTCTATACACACCTAATACCATCTAGGTGAGTTTTGGCAGTGAAG
CCTTCCTGTTCCTGTCGTACTCCTTCCTCCCAGCAGTCTCAGCTTTGCTA
AGATACTCCCCCGCCTGCTACATTGGAACTCCTGCCACCTTCTATGATTA
CGGAGCTTTCTCGTCTACTGCACTTGGGGGAAGGGGACTTTCGGGGGAGA
TGGAGGAGGCAGTGACAGGTGCTCCAGGGGTAGATGCAATGTTCTTCTCA
CCTATATTGACGTGGTGGTTGAGGCCTGCATGGATGGCACTGATGGTTTG
CTGTGGTGTTCGGCAGCTTATCAATGTGGTACAGGTATGTACGTACATGT
GGACCAGCCTCTGATATATCTTTCTGTAGTATCAAACAGTGAAAGGGGGC
AATTAGTCAATGTACACGTCAGTTGACGTTTGGTTGATCCCAAGATTTAT
CCAGGGAGGTGTTATGATGCTGTAGAAGGGATGAAGGTTAAGGGATGAAT
GCGTTCCATTGACTTAAGGTAGTATACAGACTCTTTGATGGATGAGAATA
TTGCCTTTCTACATCGTCCAGTTATTGGAAAGACTTAGCCCACTATTAGT
ATGCAAGAATATGTTGAGGAAGTTTGCTCAATTTCTTCTACTATTAATGG
TAAATATGATGACATAATAGCTTTACATTAATCTCTGATTTCTTAGTTGA
TAGAAATTAGGACCTGGAACACTCTGTAAACTGCTGTAAAAGGGGCTCAA
TTTTCAATGCTGGTCCACCCCTTCAGTATTATAGTGTTATGTTTATTGCA
TGATATATTCCCAGTAGCAGCAACGCCACCTAGATTTTATGCAAGCATCC
ATGCCCACACTGTCCACCTCTTGGTGATTAGCTGTACACTTGATCTATCA
TTGTAATCCAGGATTGAGAATGCGGTTGAACTCTAGGGTGTGAGGGGCAT
TTGAGATCATATAATTGCTTGCACCAATGGAATGTACTCACCCAGTAAGA
CCTTTTTTTGTAGATAACTATGATTTTTGAGTTTACTGAACTGTTCGTTT
CATCGTTTCTGAAAAATTCGAATGTGTTTTTGTCCATTACTTAAATCATT
GCCTTAACTATTCCAAGTCTCTCTCCCCATTGTGCTATATATATTATGTT
TTTACATCTTTGAAAATAATAAGGTGTTGGTCTCAGTGTCCAAGCTCTCT
TCTGGAGTCATAGCGGACTCTGCTGGGCGGGACCTGTTCCAGGGTAAGGG
CTACAGAGCCAACAGTAGCAAGGGTAAGGGGAGTCGACCATCACTAGGGG
GTCGACTTCAGGACCAACGACCAACCATGTACTAAGTTGACTGCGAGTAT
TACACCAAAATTGAGGGGTATAGGGAGGTTGTAAGGTCGATGTCTTTGGT
GCACATGACATAGAGGATGTTTCATTGGTGCAGATATTGCTTCTTATGTC
AAGATCCCCATTCCATGATATTCTTGGCAGGATATTTGAGCTCTGTGGTC
AAGGGACGCTGACAGCTGTATTGTGAAAAGTCGCCTTAGAGTTACTTGAG
GGGAATAACATGCGTACTGAGGAATGTGTGCCGAGCTCTGAGCAAGAGGG
GTTTTCATAGGAGACTGTTGTTGGTGTTGTCGATTCTTTGTGTGGATATG
TTGTTTGAACTTATTTTCTGAACCATTGTCAAAAAGATCACCAAGAAGTA
TTGTAGTAAAGAAAACATTCATTTGTCGCACTTGATGATAGATGCATCAT
CGGGTCTTGCTAAAAATGAAGAGATCCTCAGTGACTGGTAGTGACCAAGA
GATGTTTCTGTAGATGCAGTGTTGGTAGTGGGTTATACTTTTGGTTGTGT
ATCGAATGTCATGTGTGCTGCTATATTATTATTCTCTGAATGTTTATTAT
GTAAGAGAACAAACAGTTAATTTTGTTGTGTATCCATTATGCCTTTGGTA
TTGGGTGGAGTGCATTAGCTGCCTATGGGCTATCTCTGATGGTGTGAGAT
TGAACTCGGCTGTGATTTCTGTTAATGAGCAAAGGGGAACTTTGCGCAGA
ATTGAAGTCTTGATAGTGCTGGTAGGCGGGGGGAAATGAGTAGTTGCTCC
ATTGTGTCACAGACAACTGGGGTGGGTGGTGGGTGAGGGAGAGTTTTCCT
GTGATAGTGTGTACATTATATCGTATTGGTGTGTAGCACCTTTTCAAATA
CTACTTGAGAGGTCATGTGTCAAAAGAAGGTTTCATGGTAGGCCTCTTGC
AGTCTCCATTTTCCCTGGTATAGTTTGCAGGAAGGGGTACTCGTACTTTC
CTCTATGTATATACTCCGAAGTATGTAAGAAGCCGTTTTATTGCGGGGGG
GGCTTTTACGTATTGTAGAGGGCACACAACCTGCATCCCCCGTTGACAGC
CAATAAAATTAGGTTCTTTTTACTTGACATCAACCTGCTGTTGCCATGGA
GTATGATTATTACATAAACATTCCACAAATACACTACAATAGTTAGCTGA
AAATGGCACTACAGTCAAACGTTATTGTCCTTTATGTTTGACATGCGTGT
TCAATCATGTGTCACATGTGTGTGTGTATGTGCAAGCAGTTACTAGTTGT
ATGTCACTCCTTGTGCCCACAAACACCTGGGCCTGGAACTCCACCTATGT
TTATCATATTTGTAACAGCACCACATACTTGGAATTTGGTTCGTTGTATG
CTAGAATAGACAATCATATTAAATGGGCATGTATTGACGTGGAATGAAAT
GGAGGGGTTGTCACCGAGAGGTAACCCCAGGAGAGGTAGTTCGAGCAACA
GGAGTGTTGGGGCAAGGAAGTAGACAATGTTATAATCTCCTCACATCCAT
GCAGCGTTTGGTGGTGGTGATCAGATCTACTCACCTCCTTTCCATACTTA
CAGCAATTCTATGCAGTGTCCATTGTTGAGCTCGTACAGGGACACTCTAT
GAAGAGACAGATACATGAGCTAGGTTGGCACGCGCAGAGGTAGTGCAGGT
GGTGTGAACTGGGAAGGACAGACATACGATGTAGGGCTCACCTTTGACCG
AGGACTGATCCCACAACAAAAAAGAACCCT
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Coding sequence (CDS) from alignment at C-tenellus_contig7477:182..6461+

>mRNA_C-tenellus_contig7477.1.1 ID=mRNA_C-tenellus_contig7477.1.1|Name=mRNA_C-tenellus_contig7477.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=804bp|location=Sequence derived from alignment at C-tenellus_contig7477:182..6461+ (Choristocarpus tenellus KU2346)
ATGCTGGATCTGCTGGCAAGGTGGGTATCTCGGCAACCTGGGCTCCCCAT
GGACAGCTTTGCTGTTGCTCTTTCCACGCTAGGTGATCGCCTTGCCTCCC
TAGTGCTGGTGGGCGCCATAATCCTTCTGGACACAGACCCCCGCCACCGT
GTCCTCTTCGCCTCCATCCTCTCATTGGAACTGGGATCGTACTGGCTGCA
GATGGTGGTTGCTGCAGGAAGAGCTTCTCCCCCCCCCATCCGCATCAGGG
GGGAAAGCTTTGTGGACAATGGTAATGGAGACACTGGTATTGGGGCAGGC
TTGGGCTGGGCTGGCGATGTTGGAGAAGGGAGGAATAGCATTGGAGGGAG
CTCGGTTGGAGGGAGGAGAGGATGTGGAGGGTGGGGGGGGTGTCTGCTAA
GAAAGAGTGATGCTGTGAGGATGGACTTTGTTGGGCACCTCATGTTGAGG
CAGCCAGGACTACTCACGCTGGTGAGTTTTGGCAGTGAAGCCTTCCTGTT
CCTGTCGTACTCCTTCCTCCCAGCAGTCTCAGCTTTGCTAAGATACTCCC
CCGCCTGCTACATTGGAACTCCTGCCACCTTCTATGATTACGGAGCTTTC
TCGTCTACTGCACTTGGGGGAAGGGGACTTTCGGGGGAGATGGAGGAGGC
AGTGACAGGTGCTCCAGGGGTAGATGCAATGTTCTTCTCACCTATATTGA
CGTGGTGGTTGAGGCCTGCATGGATGGCACTGATGGTTTGCTGTGGTGTT
CGGCAGCTTATCAATGTGGTACAGGTATGTACGTACATGTGGACCAGCCT
CTGA
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