mRNA_C-tenellus_contig7464.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7464.1.1
Unique NamemRNA_C-tenellus_contig7464.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig7464.1.1 vs. uniprot
Match: A0A126WUU4_9PHAE (Putative LOV domain-containing protein n=1 Tax=Punctaria latifolia TaxID=90013 RepID=A0A126WUU4_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 5.410e-22
Identity = 55/84 (65.48%), Postives = 64/84 (76.19%), Query Frame = 1
Query:    1 QVLGRNCRFLQGPQTDPSAVALIRQAVEEERDASVTVLNFKADGTPFYNQFFVAPLWNRNKVVVNYVGVQVPVPGPCLPPDDKT 252
            QV+G NCRFLQGP TD  AVA +RQA+E+  DASV  LN+KADGTPF+NQFFVAPL +    +VNYVG Q  VPGP LPP+  T
Sbjct:  186 QVIGNNCRFLQGPDTDKRAVATVRQAIEKGEDASVCFLNYKADGTPFWNQFFVAPLRDDKNRIVNYVGAQCLVPGP-LPPERPT 268          
BLAST of mRNA_C-tenellus_contig7464.1.1 vs. uniprot
Match: A0A126X4A4_9PHAE (Putative LOV domain-containing protein n=1 Tax=Sargassum thunbergii TaxID=127542 RepID=A0A126X4A4_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 1.830e-21
Identity = 50/80 (62.50%), Postives = 63/80 (78.75%), Query Frame = 1
Query:    1 QVLGRNCRFLQGPQTDPSAVALIRQAVEEERDASVTVLNFKADGTPFYNQFFVAPLWNRNKVVVNYVGVQVPVPGPCLPP 240
            QV+GRNCRFLQGP TD  +VA+IRQA+ +  DA V ++N+KADGTPF+N FFVA L + N  ++NYVG Q P+PGP LPP
Sbjct:  162 QVVGRNCRFLQGPDTDKQSVAIIRQAIGKGEDAHVNLINYKADGTPFWNNFFVAALRDENNRIMNYVGTQCPIPGP-LPP 240          
BLAST of mRNA_C-tenellus_contig7464.1.1 vs. uniprot
Match: F0YKI0_AURAN (PAS domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YKI0_AURAN)

HSP 1 Score: 101 bits (251), Expect = 1.840e-21
Identity = 48/83 (57.83%), Postives = 61/83 (73.49%), Query Frame = 1
Query:    1 QVLGRNCRFLQGPQTDPSAVALIRQAVEEERDASVTVLNFKADGTPFYNQFFVAPLWNRNKVVVNYVGVQVPVPGPCLPPDDK 249
            +V+G+NCRFLQGP T P  VA + + + E  D +VT+LN+K DGTPF+NQ FVA L + NK VVNYVGVQ+PV GP   P D+
Sbjct:   40 EVIGKNCRFLQGPGTFPGTVAELAKGIAEGTDTTVTILNYKKDGTPFWNQLFVASLRDINKRVVNYVGVQIPVAGPLPKPGDE 122          
BLAST of mRNA_C-tenellus_contig7464.1.1 vs. uniprot
Match: A0A126X4A9_9PHAE (Putative LOV domain-containing protein n=3 Tax=Sargassum TaxID=3015 RepID=A0A126X4A9_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 8.210e-21
Identity = 50/80 (62.50%), Postives = 63/80 (78.75%), Query Frame = 1
Query:    1 QVLGRNCRFLQGPQTDPSAVALIRQAVEEERDASVTVLNFKADGTPFYNQFFVAPLWNRNKVVVNYVGVQVPVPGPCLPP 240
            QV+GRNCRFLQGP TD  +VA+IRQA+ +  DA V ++N+KADGTPF+N FFVA L + N  ++NYVG Q P+PGP LPP
Sbjct:  225 QVVGRNCRFLQGPDTDKQSVAIIRQAIGKGEDAHVNLINYKADGTPFWNNFFVAALRDENNRIMNYVGTQCPIPGP-LPP 303          
BLAST of mRNA_C-tenellus_contig7464.1.1 vs. uniprot
Match: A0A126WXM2_9PHAE (Putative LOV domain-containing protein n=1 Tax=Sargassum integerrimum TaxID=1159339 RepID=A0A126WXM2_9PHAE)

HSP 1 Score: 108 bits (270), Expect = 1.020e-20
Identity = 50/80 (62.50%), Postives = 64/80 (80.00%), Query Frame = 1
Query:    1 QVLGRNCRFLQGPQTDPSAVALIRQAVEEERDASVTVLNFKADGTPFYNQFFVAPLWNRNKVVVNYVGVQVPVPGPCLPP 240
            QV+GRNCRFLQGP TD  +VA+IRQA+++  DA V ++N+KADGTPF+N FFVA L + N  ++NYVG Q P+PGP LPP
Sbjct:  451 QVVGRNCRFLQGPDTDKQSVAIIRQAIKKGEDAHVNLINYKADGTPFWNNFFVAALRDENNRIMNYVGAQCPIPGP-LPP 529          
BLAST of mRNA_C-tenellus_contig7464.1.1 vs. uniprot
Match: A0A7S1E2T5_9STRA (Hypothetical protein n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1E2T5_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 1.180e-20
Identity = 47/73 (64.38%), Postives = 57/73 (78.08%), Query Frame = 1
Query:    1 QVLGRNCRFLQGPQTDPSAVALIRQAVEEERDASVTVLNFKADGTPFYNQFFVAPLWNRNKVVVNYVGVQVPV 219
            QVLGRNCRFLQGP TDP AV +IR+AV    DA+  +LN+KADG+PF+NQFFVA L + +  +VNYVGVQ  V
Sbjct:   37 QVLGRNCRFLQGPSTDPRAVDIIRKAVASGADATTCILNYKADGSPFWNQFFVAALRDSDNCIVNYVGVQCEV 109          
BLAST of mRNA_C-tenellus_contig7464.1.1 vs. uniprot
Match: A0A836C8A6_9STRA (Aureochrome1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8A6_9STRA)

HSP 1 Score: 103 bits (256), Expect = 2.260e-20
Identity = 49/70 (70.00%), Postives = 56/70 (80.00%), Query Frame = 1
Query:    1 QVLGRNCRFLQGPQTDPSAVALIRQAVEEERDASVTVLNFKADGTPFYNQFFVAPLWNRNKVVVNYVGVQ 210
            Q+LGRNCRFLQGP+TDP AVA+IR A+E   D SV +LN++ADGT FYNQFFVA L N    VVNYVGVQ
Sbjct:  213 QILGRNCRFLQGPETDPRAVAVIRSAIERGEDTSVCLLNYRADGTTFYNQFFVASLCNGEGKVVNYVGVQ 282          
BLAST of mRNA_C-tenellus_contig7464.1.1 vs. uniprot
Match: A0A126X3T8_SARHM (Putative LOV domain-containing protein n=1 Tax=Sargassum hemiphyllum TaxID=127544 RepID=A0A126X3T8_SARHM)

HSP 1 Score: 107 bits (266), Expect = 2.870e-20
Identity = 50/80 (62.50%), Postives = 63/80 (78.75%), Query Frame = 1
Query:    1 QVLGRNCRFLQGPQTDPSAVALIRQAVEEERDASVTVLNFKADGTPFYNQFFVAPLWNRNKVVVNYVGVQVPVPGPCLPP 240
            QV+GRNCRFLQGP TD  +VA+IRQA+ +  DA V ++N+KADGTPF+N FFVA L + N  ++NYVG Q P+PGP LPP
Sbjct:  413 QVVGRNCRFLQGPDTDKRSVAIIRQAIGKGEDAHVNLINYKADGTPFWNNFFVAALRDENNRIMNYVGTQCPIPGP-LPP 491          
BLAST of mRNA_C-tenellus_contig7464.1.1 vs. uniprot
Match: A0A1L4A1R1_HETAK (Aureochrome3 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A1L4A1R1_HETAK)

HSP 1 Score: 103 bits (256), Expect = 3.080e-20
Identity = 49/73 (67.12%), Postives = 59/73 (80.82%), Query Frame = 1
Query:    1 QVLGRNCRFLQGPQTDPSAVALIRQAVEEERDASVTVLNFKADGTPFYNQFFVAPLWNRNKVVVNYVGVQVPV 219
            Q+LGRNCRFLQGP TD  AV +IR+ V+E RD SV +LN+KADGTPF+NQFFVAPL + N  +VN+VGVQ  V
Sbjct:  237 QILGRNCRFLQGPGTDRKAVEIIRKGVQEGRDMSVCLLNYKADGTPFWNQFFVAPLRDANDQIVNFVGVQCEV 309          
BLAST of mRNA_C-tenellus_contig7464.1.1 vs. uniprot
Match: A0A836CJE1_9STRA (Aureochrome 4 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJE1_9STRA)

HSP 1 Score: 100 bits (248), Expect = 8.160e-20
Identity = 49/82 (59.76%), Postives = 63/82 (76.83%), Query Frame = 1
Query:    1 QVLGRNCRFLQGPQTDPSAVALIRQAVEEERDASVTVLNFKADGTPFYNQFFVAPLWNRNKVVVNYVGVQVPVPGPCLPPDD 246
            +V+GRNCRFLQGP TDP AV +IR+ V E RD SV +LN+KADG+PF+N FF++ L ++N VVVN+VGVQ  V     PP+D
Sbjct:  155 KVIGRNCRFLQGPGTDPRAVDIIRRGVSEGRDTSVCLLNYKADGSPFWNNFFISALRDQNGVVVNFVGVQAEVKQ--APPED 234          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7464.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A126WUU4_9PHAE5.410e-2265.48Putative LOV domain-containing protein n=1 Tax=Pun... [more]
A0A126X4A4_9PHAE1.830e-2162.50Putative LOV domain-containing protein n=1 Tax=Sar... [more]
F0YKI0_AURAN1.840e-2157.83PAS domain-containing protein n=1 Tax=Aureococcus ... [more]
A0A126X4A9_9PHAE8.210e-2162.50Putative LOV domain-containing protein n=3 Tax=Sar... [more]
A0A126WXM2_9PHAE1.020e-2062.50Putative LOV domain-containing protein n=1 Tax=Sar... [more]
A0A7S1E2T5_9STRA1.180e-2064.38Hypothetical protein n=1 Tax=Thalassionema nitzsch... [more]
A0A836C8A6_9STRA2.260e-2070.00Aureochrome1 n=1 Tax=Tribonema minus TaxID=303371 ... [more]
A0A126X3T8_SARHM2.870e-2062.50Putative LOV domain-containing protein n=1 Tax=Sar... [more]
A0A1L4A1R1_HETAK3.080e-2067.12Aureochrome3 n=1 Tax=Heterosigma akashiwo TaxID=28... [more]
A0A836CJE1_9STRA8.160e-2059.76Aureochrome 4 n=1 Tax=Tribonema minus TaxID=303371... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7464contigC-tenellus_contig7464:623..5197 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog44056.XP_009040904.1
PFAMsPAS_9
Model size2265
Max annot lvl2759|Eukaryota
KEGG koko:K20715
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003824,GO:0004672,GO:0004674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005773,GO:0005886,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006996,GO:0007154,GO:0007165,GO:0007623,GO:0008150,GO:0008152,GO:0009314,GO:0009416,GO:0009605,GO:0009606,GO:0009628,GO:0009637,GO:0009638,GO:0009657,GO:0009658,GO:0009785,GO:0009881,GO:0009882,GO:0009898,GO:0009902,GO:0009903,GO:0009904,GO:0009986,GO:0009987,GO:0010119,GO:0010155,GO:0010181,GO:0010359,GO:0010360,GO:0010361,GO:0010362,GO:0016020,GO:0016043,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019538,GO:0019750,GO:0022898,GO:0023052,GO:0030522,GO:0032409,GO:0032410,GO:0032412,GO:0032413,GO:0032553,GO:0032879,GO:0034762,GO:0034763,GO:0034765,GO:0034766,GO:0035556,GO:0036094,GO:0036211,GO:0038023,GO:0042802,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043269,GO:0043271,GO:0043412,GO:0044070,GO:0044092,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0046777,GO:0048037,GO:0048511,GO:0048519,GO:0050662,GO:0050789,GO:0050794,GO:0050896,GO:0051049,GO:0051051,GO:0051179,GO:0051234,GO:0051640,GO:0051641,GO:0051644,GO:0051649,GO:0051656,GO:0051667,GO:0051716,GO:0060089,GO:0065007,GO:0065009,GO:0071214,GO:0071478,GO:0071482,GO:0071483,GO:0071704,GO:0071840,GO:0071944,GO:0097159,GO:0097367,GO:0098552,GO:0098562,GO:0104004,GO:0140096,GO:1901265,GO:1901363,GO:1901564,GO:1903792,GO:1903959,GO:1903960,GO:1904062
Exons2
Evalue3.73e-24
EggNOG OGsKOG0610@1|root,2QPPH@2759|Eukaryota
Ec32 ortholog descriptionBasic leucine zipper and PAS domain protein
Ec32 orthologEc-14_003470.1
EC2.7.11.1
Descriptionnegative regulation of anion channel activity by blue light
Cds size744
COG categoryT
BRITEko00000,ko01000,ko01001
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790037.2881522-UTR-C-tenellus_contig7464:622..21411680790037.2881522-UTR-C-tenellus_contig7464:622..2141Choristocarpus tenellus KU2346UTRC-tenellus_contig7464 623..2141 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790037.3027766-CDS-C-tenellus_contig7464:2141..28101680790037.3027766-CDS-C-tenellus_contig7464:2141..2810Choristocarpus tenellus KU2346CDSC-tenellus_contig7464 2142..2810 -
1680790037.3185258-CDS-C-tenellus_contig7464:5122..51971680790037.3185258-CDS-C-tenellus_contig7464:5122..5197Choristocarpus tenellus KU2346CDSC-tenellus_contig7464 5123..5197 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7464.1.1prot_C-tenellus_contig7464.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7464 2142..5197 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7464.1.1

>prot_C-tenellus_contig7464.1.1 ID=prot_C-tenellus_contig7464.1.1|Name=mRNA_C-tenellus_contig7464.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=248bp
QVLGRNCRFLQGPQTDPSAVALIRQAVEEERDASVTVLNFKADGTPFYNQ
FFVAPLWNRNKVVVNYVGVQVPVPGPCLPPDDKTAGISSIQGQGPHSQQT
EATVVVSKPATSNASKSESLPSEKVVVKSEKSQGLSATVETNPVGSSTLS
VESSPPPQAKSGVDVKSSPYPAAGCRSDLSVVNKETPEEASSCVEGKTRT
MVSSDAMSSSMAPQRAPFAIKTKEVSSTPMTSTMSTVTVVSTGGGAQ*
back to top

mRNA from alignment at C-tenellus_contig7464:623..5197-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7464.1.1 ID=mRNA_C-tenellus_contig7464.1.1|Name=mRNA_C-tenellus_contig7464.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=4575bp|location=Sequence derived from alignment at C-tenellus_contig7464:623..5197- (Choristocarpus tenellus KU2346)
CAGGTCCTGGGTCGCAATTGCCGATTCCTTCAGGGACCCCAGACAGACCC AAGTGCAGTGGCCCTCATTCGTCAGGTATTGAACTGGCTATTGTGTCCCT GATGCCCTTCCCTTGTCAGTGTTGTGAGGGATGACATTGAAAGGGGCCAG GTACGGGGGCGTGGGGTGTAGGGGGGGAGGTCTAAGGCAGTGTTGAAAGT ACTGCATTTGGTGTGTTGGTGGATGATGGCATGTGACTCAAGTTGTCCGC AAACATATTTATGAGTCTTGTGTGGCCTGTGACTGGTGTGACTGGTGTGA CTGAAGTTATTACACATATTGCCGTGTCTGGAATGGAGTCATTTTTTTTT AATTTAGTTTTGATGGTACACGAGAAAAGGCGTTTTTGGTTGCAATTTTT TGTTGCTGTTACGTTTTATTTTTTAGCTTATTTGCCCTGTGTACTGAGTG ACGTGAGACTGCATACACTCTTTGAAAAAAGAAATTATAGTATAGTTCAA AGAAAAGAAAAAAAGTTTGTGTATGTTTGCGCGCGCGTTTGTGTGTGCGT GCCTGTGTGTGTGTGTGTGTGTGTGTTTTGAGGTTTTGCAGAGTGTGTTG TGATGATTTTATCCCACCTTCAAAGATGTGATTGGATTCCTCTGTTCAGG AAAAGGTTTTGCATGTTTGGAAGTGGTGCAGTTTCAGATGAGGTCTATAT TATTTTACTTCAGTGATTCATTTTTTTCTTGTTGTAATACTTGAACAGGC GAGAGGTCCGTTTTGTCCGAGGTCTCTGGTTCTTGTTTGCTGTTAGCAGG ATTTGGGTGTTCGAGGGGTGAATGCGTAGGCTACAAGATGCACCTCAAAT ACTATGTATGTGTCAATACATAATATATATACATACATACATACATACAT ACATACATACATACATACATACATACATACATACATAATATATATGTGTA TATATATAGGTTCATTTTTCCGTGGGTTTTTTGTATGGTTACATATATAT ACATTTTTGTGTTTTAATTAATACTTTTGAAATTTAGAGGAAAAAAATAG TATTAGAGTTACGTATTGGTCGTAGGGGTTGTATTTACTGTAGGGGTACC GTTGGCGATGGTGCTGGAAATTTCTTTTGGTAGATATAGATACATATATA TATATTTTGTTGTTGTTGCAAGCCTCTGAAGTGATGAGGTTTCAAAAGTG GCGGCGAGGTTATCCAGGTCATGTAGTTGTGTTTCAAGGCACCCACCATA GATACATATATAGATGCAATCAGAATTGTCTAAGTAGGGTTGTAGTTAGT TGTTTGGGGGAGAGGCATATTGTAACCATTGGTGGTTTTGTCAGATAGTG TTAGGAACCTCTTTTGGAGCAAGATAGTGTTAGGGACCGAGTTGATTTGT TAGTGCTACGGTCTCTCTTTTCTTTTTTTTATTTCCTACTGAATGAGGGC GGCTCAGGTGGTTGGTGCGAGAGTACCATGTAGTACTCTGTAGATTGTGT TGGTAGGAGAGGAAAGAGGGGGGGAAGCGAGGGGGGGGAAAGGTGTGCTT CCAATGATGGTGTAAACAGGGGAGCAAGGTGTAGGTGGATTTATTGCATG TTGTGGTGGTCTATGCAGGAAAATAGGCAGGATTGCTTGGTTTGCCGACC ACACCTCATCTTGTATTGGGAACACATAGGAACTATTGTACTTTGTGTTG CACGGTGACCGGTACCTGGTACCTGGTACCTGGTGAGGACATTGGATTGC CAGCCTATGCTACGTAATGGACATTCTTCAAGGGAAGCCAACGGGGAGAG GGTTTCTGGTGGCGTGTTGATGGTGGTTTGCTGTGAGGGGTGGGTCTCAT CAAGGTCGATTGATGTCTGGTTCACCCCCCAGTGAGGACGGTTCGAACAC GGAAGGCATCTCGAGGATTTTGTAGGAAGTAGGACAAACGCATCGCTTTC TAGTAGGGCTTTTCTTGCCGTAGCCTCTCTTTTCTGTTAGGTGTGCATTT TTTTTTTCTTATTATTTCCTGCTCTATGCCGTTCATCCCCCTGCACCTAC CTTAAATATTATTGGCGGGACCCTCTCTCTGCCCTGCATCTGTTGTATCT TTTTTCGGCGGGAGCTTCTGTTCTGCGTCTATTGTACCCTTTATTGGCAG GAACCTATCCTCTATTTTGTACCCTCTATTTTGTTCACCGGTGCTGATTT GGTGTCACTTACCTAGTGTCACTTACCTACCCCTACATGATCCTGCCGTT AGCAACATAGCTACGTGAAGAATGATGTGGTTTGCCAGGTCAACCACCCG CCTCTCTCTCTCTCCCTCTCTTTCTCTTTCTGTCTGTCTGTCTGTCTGTC TCGATCGTCTGCTTTTTCCTTTTTGGTGTGTGAAAAGGCTGTGGAGGAGG AACGCGATGCCTCTGTCACTGTACTCAATTTCAAGGCCGACGGGACGCCC TTCTACAACCAGTTCTTTGTTGCTCCCCTGTGGAATCGAAACAAGGTGGT TGTGAACTATGTGGGGGTTCAGGTTCCTGTGCCCGGTCCCTGCCTCCCGC CAGATGATAAGACGGCGGGTATATCATCCATTCAGGGGCAGGGGCCGCAT TCCCAACAGACAGAGGCGACAGTTGTGGTGTCCAAACCTGCAACTAGCAA TGCCTCTAAAAGTGAATCCTTACCTTCAGAAAAGGTGGTAGTCAAATCTG AGAAGTCGCAGGGACTGTCAGCCACCGTGGAGACCAACCCTGTGGGTAGC AGCACCCTCTCGGTGGAATCCTCCCCCCCCCCTCAGGCGAAGTCTGGTGT GGATGTGAAGTCAAGTCCTTACCCTGCCGCCGGGTGTCGATCAGATTTGT CAGTAGTGAATAAAGAAACCCCTGAGGAGGCGTCGTCTTGCGTGGAAGGC AAGACGAGAACGATGGTGTCGAGCGATGCAATGAGCTCCTCCATGGCTCC ACAAAGAGCACCTTTTGCTATCAAGACCAAGGAGGTCTCTTCTACTCCCA TGACCAGTACCATGTCAACAGTTACTGTTGTGAGCACTGGAGGAGGGGCA CAGTAAGGGTTCCAGGACCCTTGACTTTCGCGTATGGTATGAAGCCTGTT GGTGAAGGTGTAGGGGAGCAGAGGAGGTGGGAATTGGAGATGAGTGGGGG GATGGGAGTGCAAGGGGTCTGTGCTGGGCAATGGTGCAAAAGCATCTATC TGGTCGAGATGTGGTGGGTGGAGATGGATGTACATGTGCGAACCCCATCT CACTCACCATCTTATCTCACTCCGATTTGTACTTTCATTTCCCCCAGACG ATGGTAGAGATTCGATTGTTCCTGTGTAACTGGAGACCTTAGTTTACTGA TTTTGGAGCTTCATTTTTTTTTAACTTGGACCGTAGAGGTACCGTTGACG GAAATTGACGGAAATTGTTTCCGGAGAGAGTACTGTTGAGCTGTTGATGG GGTGTTATTTAGTGCCTGCTACATGAAGGGCCAAGGGTTTGAGGAACAGT GGAATGACGAAGGATTATTAAGGGAGGCATTCACACTTCACCAAGTCCTC TGATAGACTGGGAGGGGCTATAGAAGAGAACCCTAGAAGAGAGCCCGCAA CTTAATGAATGCGACTTGCTTAGGTGTAGACAGATTTTTGTGTTCACGGA GAAGGCATGCATGAACTGTGGGGATAGAGGAATCGGTTACGCAACTGGCG AGAATGAAGATGTTCTGGTGATGACTTATAACTGAGGAGTCCTTCGCCAT GCCTGGCTGAGCCCACGCTTGCTGGCTGGACTTTTGGATGATGCTGTGAG GATAGAGAGAACAGGATAGATCGGCTGTGATCCTTTCCATGCCATGTTTT TTTCTGGCTTTGAGATCAATTTATTTATTTTAGGTAAAGAAAAAAGACAA AACACAATACAGCCTTGAGATTTGCCAGGGGGAGAGGGGGGGGTGGTAGT ATGTGGTGGATTTTTGCCTTGGATATAAAAGTCCCTGCTCCCCTTTTTTG TTGTTATCTGCACAGAAGGAGGGGGTGAGGAGAACAGAAGAAGACTTGGC GGGTTTGGGTGGAGTCAGCACTTTCTTTCTGATGTGAAACCCATGGTCTG CATTGGATGTGGTAATATGTTGTTGTCGTTTTTTGTTGTTGTGGTAACTT TATGATGTTTTGCAGTGGGTGTTACGTATCTACAATTATACACCTCGGCT GATCCATGTTGTGTTGGAGTTGAAGTCAAGACTACAATAATAATTAGTCT CTCAAAGCTTTGATTAGTAGTGCAAGTAGCGGTTGTGGCTGTAGCGAATG AAAGGCGATCTTCTGTGGTGACACCTGTGTGTGTTCCACACGAAAGGCTG GGCTCCAAGTGAACCGGTCGTATCGTTTTTCTGGGGTATTATTGTGATAG TTTGTATACAACAGTGTTGACCGTACATTGTGCGGAGAAAAGAGGGCACG TAAGATGAAGTGCGATTAAGAGTTCACCCATCCATCCATACCATGTGTCG TGTTTTCAACTTTACAGTGGTAGAAGATCAGTGGAATAATCATAATAATA CACAAGGATAAATTAACCAATGGCG
back to top

Coding sequence (CDS) from alignment at C-tenellus_contig7464:623..5197-

>mRNA_C-tenellus_contig7464.1.1 ID=mRNA_C-tenellus_contig7464.1.1|Name=mRNA_C-tenellus_contig7464.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=744bp|location=Sequence derived from alignment at C-tenellus_contig7464:623..5197- (Choristocarpus tenellus KU2346)
CAGGTCCTGGGTCGCAATTGCCGATTCCTTCAGGGACCCCAGACAGACCC
AAGTGCAGTGGCCCTCATTCGTCAGGCTGTGGAGGAGGAACGCGATGCCT
CTGTCACTGTACTCAATTTCAAGGCCGACGGGACGCCCTTCTACAACCAG
TTCTTTGTTGCTCCCCTGTGGAATCGAAACAAGGTGGTTGTGAACTATGT
GGGGGTTCAGGTTCCTGTGCCCGGTCCCTGCCTCCCGCCAGATGATAAGA
CGGCGGGTATATCATCCATTCAGGGGCAGGGGCCGCATTCCCAACAGACA
GAGGCGACAGTTGTGGTGTCCAAACCTGCAACTAGCAATGCCTCTAAAAG
TGAATCCTTACCTTCAGAAAAGGTGGTAGTCAAATCTGAGAAGTCGCAGG
GACTGTCAGCCACCGTGGAGACCAACCCTGTGGGTAGCAGCACCCTCTCG
GTGGAATCCTCCCCCCCCCCTCAGGCGAAGTCTGGTGTGGATGTGAAGTC
AAGTCCTTACCCTGCCGCCGGGTGTCGATCAGATTTGTCAGTAGTGAATA
AAGAAACCCCTGAGGAGGCGTCGTCTTGCGTGGAAGGCAAGACGAGAACG
ATGGTGTCGAGCGATGCAATGAGCTCCTCCATGGCTCCACAAAGAGCACC
TTTTGCTATCAAGACCAAGGAGGTCTCTTCTACTCCCATGACCAGTACCA
TGTCAACAGTTACTGTTGTGAGCACTGGAGGAGGGGCACAGTAA
back to top