mRNA_C-tenellus_contig7464.1.1 (mRNA) Choristocarpus tenellus KU2346
Overview
Homology
BLAST of mRNA_C-tenellus_contig7464.1.1 vs. uniprot
Match: A0A126WUU4_9PHAE (Putative LOV domain-containing protein n=1 Tax=Punctaria latifolia TaxID=90013 RepID=A0A126WUU4_9PHAE) HSP 1 Score: 110 bits (275), Expect = 5.410e-22 Identity = 55/84 (65.48%), Postives = 64/84 (76.19%), Query Frame = 1 Query: 1 QVLGRNCRFLQGPQTDPSAVALIRQAVEEERDASVTVLNFKADGTPFYNQFFVAPLWNRNKVVVNYVGVQVPVPGPCLPPDDKT 252 QV+G NCRFLQGP TD AVA +RQA+E+ DASV LN+KADGTPF+NQFFVAPL + +VNYVG Q VPGP LPP+ T Sbjct: 186 QVIGNNCRFLQGPDTDKRAVATVRQAIEKGEDASVCFLNYKADGTPFWNQFFVAPLRDDKNRIVNYVGAQCLVPGP-LPPERPT 268
BLAST of mRNA_C-tenellus_contig7464.1.1 vs. uniprot
Match: A0A126X4A4_9PHAE (Putative LOV domain-containing protein n=1 Tax=Sargassum thunbergii TaxID=127542 RepID=A0A126X4A4_9PHAE) HSP 1 Score: 107 bits (267), Expect = 1.830e-21 Identity = 50/80 (62.50%), Postives = 63/80 (78.75%), Query Frame = 1 Query: 1 QVLGRNCRFLQGPQTDPSAVALIRQAVEEERDASVTVLNFKADGTPFYNQFFVAPLWNRNKVVVNYVGVQVPVPGPCLPP 240 QV+GRNCRFLQGP TD +VA+IRQA+ + DA V ++N+KADGTPF+N FFVA L + N ++NYVG Q P+PGP LPP Sbjct: 162 QVVGRNCRFLQGPDTDKQSVAIIRQAIGKGEDAHVNLINYKADGTPFWNNFFVAALRDENNRIMNYVGTQCPIPGP-LPP 240
BLAST of mRNA_C-tenellus_contig7464.1.1 vs. uniprot
Match: F0YKI0_AURAN (PAS domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YKI0_AURAN) HSP 1 Score: 101 bits (251), Expect = 1.840e-21 Identity = 48/83 (57.83%), Postives = 61/83 (73.49%), Query Frame = 1 Query: 1 QVLGRNCRFLQGPQTDPSAVALIRQAVEEERDASVTVLNFKADGTPFYNQFFVAPLWNRNKVVVNYVGVQVPVPGPCLPPDDK 249 +V+G+NCRFLQGP T P VA + + + E D +VT+LN+K DGTPF+NQ FVA L + NK VVNYVGVQ+PV GP P D+ Sbjct: 40 EVIGKNCRFLQGPGTFPGTVAELAKGIAEGTDTTVTILNYKKDGTPFWNQLFVASLRDINKRVVNYVGVQIPVAGPLPKPGDE 122
BLAST of mRNA_C-tenellus_contig7464.1.1 vs. uniprot
Match: A0A126X4A9_9PHAE (Putative LOV domain-containing protein n=3 Tax=Sargassum TaxID=3015 RepID=A0A126X4A9_9PHAE) HSP 1 Score: 107 bits (267), Expect = 8.210e-21 Identity = 50/80 (62.50%), Postives = 63/80 (78.75%), Query Frame = 1 Query: 1 QVLGRNCRFLQGPQTDPSAVALIRQAVEEERDASVTVLNFKADGTPFYNQFFVAPLWNRNKVVVNYVGVQVPVPGPCLPP 240 QV+GRNCRFLQGP TD +VA+IRQA+ + DA V ++N+KADGTPF+N FFVA L + N ++NYVG Q P+PGP LPP Sbjct: 225 QVVGRNCRFLQGPDTDKQSVAIIRQAIGKGEDAHVNLINYKADGTPFWNNFFVAALRDENNRIMNYVGTQCPIPGP-LPP 303
BLAST of mRNA_C-tenellus_contig7464.1.1 vs. uniprot
Match: A0A126WXM2_9PHAE (Putative LOV domain-containing protein n=1 Tax=Sargassum integerrimum TaxID=1159339 RepID=A0A126WXM2_9PHAE) HSP 1 Score: 108 bits (270), Expect = 1.020e-20 Identity = 50/80 (62.50%), Postives = 64/80 (80.00%), Query Frame = 1 Query: 1 QVLGRNCRFLQGPQTDPSAVALIRQAVEEERDASVTVLNFKADGTPFYNQFFVAPLWNRNKVVVNYVGVQVPVPGPCLPP 240 QV+GRNCRFLQGP TD +VA+IRQA+++ DA V ++N+KADGTPF+N FFVA L + N ++NYVG Q P+PGP LPP Sbjct: 451 QVVGRNCRFLQGPDTDKQSVAIIRQAIKKGEDAHVNLINYKADGTPFWNNFFVAALRDENNRIMNYVGAQCPIPGP-LPP 529
BLAST of mRNA_C-tenellus_contig7464.1.1 vs. uniprot
Match: A0A7S1E2T5_9STRA (Hypothetical protein n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1E2T5_9STRA) HSP 1 Score: 99.0 bits (245), Expect = 1.180e-20 Identity = 47/73 (64.38%), Postives = 57/73 (78.08%), Query Frame = 1 Query: 1 QVLGRNCRFLQGPQTDPSAVALIRQAVEEERDASVTVLNFKADGTPFYNQFFVAPLWNRNKVVVNYVGVQVPV 219 QVLGRNCRFLQGP TDP AV +IR+AV DA+ +LN+KADG+PF+NQFFVA L + + +VNYVGVQ V Sbjct: 37 QVLGRNCRFLQGPSTDPRAVDIIRKAVASGADATTCILNYKADGSPFWNQFFVAALRDSDNCIVNYVGVQCEV 109
BLAST of mRNA_C-tenellus_contig7464.1.1 vs. uniprot
Match: A0A836C8A6_9STRA (Aureochrome1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8A6_9STRA) HSP 1 Score: 103 bits (256), Expect = 2.260e-20 Identity = 49/70 (70.00%), Postives = 56/70 (80.00%), Query Frame = 1 Query: 1 QVLGRNCRFLQGPQTDPSAVALIRQAVEEERDASVTVLNFKADGTPFYNQFFVAPLWNRNKVVVNYVGVQ 210 Q+LGRNCRFLQGP+TDP AVA+IR A+E D SV +LN++ADGT FYNQFFVA L N VVNYVGVQ Sbjct: 213 QILGRNCRFLQGPETDPRAVAVIRSAIERGEDTSVCLLNYRADGTTFYNQFFVASLCNGEGKVVNYVGVQ 282
BLAST of mRNA_C-tenellus_contig7464.1.1 vs. uniprot
Match: A0A126X3T8_SARHM (Putative LOV domain-containing protein n=1 Tax=Sargassum hemiphyllum TaxID=127544 RepID=A0A126X3T8_SARHM) HSP 1 Score: 107 bits (266), Expect = 2.870e-20 Identity = 50/80 (62.50%), Postives = 63/80 (78.75%), Query Frame = 1 Query: 1 QVLGRNCRFLQGPQTDPSAVALIRQAVEEERDASVTVLNFKADGTPFYNQFFVAPLWNRNKVVVNYVGVQVPVPGPCLPP 240 QV+GRNCRFLQGP TD +VA+IRQA+ + DA V ++N+KADGTPF+N FFVA L + N ++NYVG Q P+PGP LPP Sbjct: 413 QVVGRNCRFLQGPDTDKRSVAIIRQAIGKGEDAHVNLINYKADGTPFWNNFFVAALRDENNRIMNYVGTQCPIPGP-LPP 491
BLAST of mRNA_C-tenellus_contig7464.1.1 vs. uniprot
Match: A0A1L4A1R1_HETAK (Aureochrome3 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A1L4A1R1_HETAK) HSP 1 Score: 103 bits (256), Expect = 3.080e-20 Identity = 49/73 (67.12%), Postives = 59/73 (80.82%), Query Frame = 1 Query: 1 QVLGRNCRFLQGPQTDPSAVALIRQAVEEERDASVTVLNFKADGTPFYNQFFVAPLWNRNKVVVNYVGVQVPV 219 Q+LGRNCRFLQGP TD AV +IR+ V+E RD SV +LN+KADGTPF+NQFFVAPL + N +VN+VGVQ V Sbjct: 237 QILGRNCRFLQGPGTDRKAVEIIRKGVQEGRDMSVCLLNYKADGTPFWNQFFVAPLRDANDQIVNFVGVQCEV 309
BLAST of mRNA_C-tenellus_contig7464.1.1 vs. uniprot
Match: A0A836CJE1_9STRA (Aureochrome 4 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJE1_9STRA) HSP 1 Score: 100 bits (248), Expect = 8.160e-20 Identity = 49/82 (59.76%), Postives = 63/82 (76.83%), Query Frame = 1 Query: 1 QVLGRNCRFLQGPQTDPSAVALIRQAVEEERDASVTVLNFKADGTPFYNQFFVAPLWNRNKVVVNYVGVQVPVPGPCLPPDD 246 +V+GRNCRFLQGP TDP AV +IR+ V E RD SV +LN+KADG+PF+N FF++ L ++N VVVN+VGVQ V PP+D Sbjct: 155 KVIGRNCRFLQGPGTDPRAVDIIRRGVSEGRDTSVCLLNYKADGSPFWNNFFISALRDQNGVVVNFVGVQAEVKQ--APPED 234 The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7464.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-tenellus_contig7464.1.1 >prot_C-tenellus_contig7464.1.1 ID=prot_C-tenellus_contig7464.1.1|Name=mRNA_C-tenellus_contig7464.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=248bp QVLGRNCRFLQGPQTDPSAVALIRQAVEEERDASVTVLNFKADGTPFYNQback to top mRNA from alignment at C-tenellus_contig7464:623..5197- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-tenellus_contig7464.1.1 ID=mRNA_C-tenellus_contig7464.1.1|Name=mRNA_C-tenellus_contig7464.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=4575bp|location=Sequence derived from alignment at C-tenellus_contig7464:623..5197- (Choristocarpus tenellus KU2346)back to top Coding sequence (CDS) from alignment at C-tenellus_contig7464:623..5197- >mRNA_C-tenellus_contig7464.1.1 ID=mRNA_C-tenellus_contig7464.1.1|Name=mRNA_C-tenellus_contig7464.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=744bp|location=Sequence derived from alignment at C-tenellus_contig7464:623..5197- (Choristocarpus tenellus KU2346)back to top |