mRNA_C-tenellus_contig7453.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7453.2.1
Unique NamemRNA_C-tenellus_contig7453.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7453.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7453contigC-tenellus_contig7453:3902..6238 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2337
Hectar predicted targeting categoryother localisation
Exons1
Cds size1881
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790036.8428593-UTR-C-tenellus_contig7453:3901..41651680790036.8428593-UTR-C-tenellus_contig7453:3901..4165Choristocarpus tenellus KU2346UTRC-tenellus_contig7453 3902..4165 +
1680790036.8630774-UTR-C-tenellus_contig7453:6046..62381680790036.8630774-UTR-C-tenellus_contig7453:6046..6238Choristocarpus tenellus KU2346UTRC-tenellus_contig7453 6047..6238 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790036.8543074-CDS-C-tenellus_contig7453:4165..60461680790036.8543074-CDS-C-tenellus_contig7453:4165..6046Choristocarpus tenellus KU2346CDSC-tenellus_contig7453 4166..6046 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7453.2.1prot_C-tenellus_contig7453.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7453 4166..6046 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7453.2.1

>prot_C-tenellus_contig7453.2.1 ID=prot_C-tenellus_contig7453.2.1|Name=mRNA_C-tenellus_contig7453.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=627bp
MLEHHNSEICSSHATPRQGCGAGIQELQGVEEDNVGNPMQGLTPMMVAAL
DGKVEVVRELLMAGEDPRVKTKEGYTPMFIAAHCGHVSVVRELLARGVDG
EVKTLVVRKLGGSECDQVVWPPIDSITPVYIAAECGHAEIVRELVVKQAD
AHRLRTDAGLSPLCIAASKGHIEVVRTLLGCGADFRVNWKGGISPLFRAA
QNGHLLVLKELLEAGADPQVRTQNHLTPCYIAARNGHEKVVQELLKVESH
RGGVARTWCSRLLSGPQERVNATQDRLTGQNRNSSIAMGFTPIHIAASRG
HTGVVKELLGAGRSPTVKTEAGFTPLLLASRNGHVNVVRVLLNAMLDKIL
LDIETKAQLSPIYVAAEFGHIDVLKELLLAGEDPDVIFENGLTPLYAAAR
NGHTAAVKILLVLGDCLNTMVRPKPKFRFFHHVCSLGLLLRSWRVMEGTQ
VANEVGFTPLYAAAEKGHVEIVQELLGAGADPQARSPNGFIPISIAASNG
HLEVVKAFIECTEINHTTNREGIITPLDAAVEQGRVDVVRALLVAGVDPT
MEHLSEVLTEDNGTLMRIQGMLPRFQAYHSHSWQWPAASTPPKSLKFDRE
HWVRTKLDVQYNECSKVFEVIHRCVK*
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mRNA from alignment at C-tenellus_contig7453:3902..6238+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7453.2.1 ID=mRNA_C-tenellus_contig7453.2.1|Name=mRNA_C-tenellus_contig7453.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2337bp|location=Sequence derived from alignment at C-tenellus_contig7453:3902..6238+ (Choristocarpus tenellus KU2346)
AAGCAACAATTTCATAGATTTTAGAAGTTAACGTGGTTCTACTATCTCTT
CAACCCATCCAGAGATCTACGACAGCAGGAATCCTAGGAAAGAGAACCAG
CCAGACAGAATCCATATTGGATACATGCAGGGAAGTTTTCTTGGCTCCAG
CACCCAAGTAAAAGATCTCTCACCCAGATTCAACACTTGAAGGTTTGGCA
TATTGCAACTCAACAAAGTGGAACACTTGATTCTCATAGCAAGATTGTCT
GGACACTCGGAGCTATGTTGGAACATCACAACAGTGAAATATGCTCATCA
CATGCAACACCCCGCCAAGGCTGTGGGGCGGGAATTCAGGAATTGCAGGG
CGTAGAAGAAGATAACGTAGGCAACCCCATGCAAGGACTCACCCCCATGA
TGGTTGCTGCTTTGGATGGGAAGGTTGAGGTGGTACGGGAACTTCTTATG
GCTGGGGAAGATCCTAGGGTGAAGACCAAGGAGGGTTACACACCGATGTT
TATTGCGGCTCATTGTGGGCATGTTAGTGTGGTACGTGAGCTTCTCGCAA
GAGGAGTAGATGGAGAAGTAAAGACATTGGTGGTCCGAAAGCTGGGCGGG
AGTGAATGTGACCAGGTGGTATGGCCCCCAATTGACAGCATTACCCCCGT
CTACATCGCTGCTGAGTGTGGGCATGCCGAAATTGTGCGAGAGCTGGTAG
TGAAGCAGGCGGACGCCCACAGATTAAGGACAGATGCAGGTCTGTCACCC
CTGTGCATTGCTGCCAGTAAAGGCCACATAGAGGTGGTGCGGACCCTGCT
TGGGTGTGGAGCGGACTTTCGGGTGAACTGGAAAGGAGGTATCTCTCCAC
TATTTCGTGCCGCTCAGAACGGACACCTACTTGTCCTAAAGGAGCTGTTA
GAGGCTGGGGCAGACCCGCAGGTGCGAACGCAAAACCATCTCACCCCCTG
CTATATAGCCGCGCGGAATGGGCACGAAAAGGTAGTGCAAGAACTCTTAA
AAGTTGAATCACACCGTGGAGGGGTCGCAAGGACGTGGTGTTCTCGCTTG
TTGTCTGGTCCTCAAGAAAGGGTGAACGCAACCCAGGATAGACTCACGGG
TCAGAATAGGAATAGCAGTATTGCAATGGGCTTCACCCCGATCCATATTG
CTGCAAGCAGAGGACATACAGGAGTCGTAAAGGAGCTGCTCGGGGCTGGG
AGATCTCCTACTGTGAAAACAGAAGCAGGTTTTACCCCTCTCCTACTTGC
TTCCAGAAATGGACACGTGAATGTAGTGAGGGTCCTACTGAATGCTATGT
TAGACAAGATCCTTCTAGACATTGAAACAAAGGCTCAACTCTCCCCCATT
TATGTTGCAGCAGAGTTTGGGCACATTGATGTTCTGAAAGAGTTGCTGTT
GGCAGGGGAGGACCCTGATGTAATATTCGAGAATGGACTAACTCCTCTAT
ATGCTGCTGCACGTAATGGGCACACTGCTGCGGTTAAAATCCTGTTAGTT
CTCGGAGACTGTCTCAATACAATGGTTAGACCTAAACCTAAATTTAGATT
TTTCCACCACGTCTGTAGCTTGGGATTATTACTCCGTAGCTGGAGAGTTA
TGGAAGGCACTCAAGTGGCAAATGAAGTAGGGTTCACACCCCTCTATGCC
GCAGCTGAGAAGGGACATGTAGAGATTGTGCAGGAGCTGCTTGGGGCAGG
AGCAGACCCTCAAGCAAGGTCACCAAATGGGTTCATCCCGATTTCAATTG
CTGCCTCAAATGGGCACCTGGAAGTTGTGAAGGCATTTATTGAGTGTACT
GAAATCAACCATACAACTAACAGAGAGGGTATTATTACCCCCTTAGATGC
AGCTGTGGAACAGGGACGTGTTGATGTGGTGCGGGCGTTGCTTGTGGCGG
GGGTTGACCCTACAATGGAGCATCTCAGTGAGGTTTTGACAGAGGATAAT
GGGACACTGATGCGCATTCAAGGCATGTTGCCCAGGTTCCAAGCATACCA
TTCCCACTCCTGGCAGTGGCCTGCTGCTAGCACTCCTCCAAAATCACTAA
AGTTTGATAGGGAGCACTGGGTCAGAACCAAGCTTGATGTCCAGTACAAT
GAGTGCAGTAAAGTGTTTGAGGTCATCCACAGGTGTGTCAAATGAAACTG
TAAACTATTGCAAGTATGATGTTGAGGAGTTTGTATCCTATTTAGAGCTG
TAGGGCTCATGGGCAGGTCTGTTCTGTGGGTTACAACATCTATGTTGGAG
TCAAAGCATCTTGGAGAGTAGAGTCGCATCCATTTGGGAGCTAAATCCAA
TGTTTGTTAGGAAGTACCAATAGACCCGAACTATCTG
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Coding sequence (CDS) from alignment at C-tenellus_contig7453:3902..6238+

>mRNA_C-tenellus_contig7453.2.1 ID=mRNA_C-tenellus_contig7453.2.1|Name=mRNA_C-tenellus_contig7453.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=1881bp|location=Sequence derived from alignment at C-tenellus_contig7453:3902..6238+ (Choristocarpus tenellus KU2346)
ATGTTGGAACATCACAACAGTGAAATATGCTCATCACATGCAACACCCCG
CCAAGGCTGTGGGGCGGGAATTCAGGAATTGCAGGGCGTAGAAGAAGATA
ACGTAGGCAACCCCATGCAAGGACTCACCCCCATGATGGTTGCTGCTTTG
GATGGGAAGGTTGAGGTGGTACGGGAACTTCTTATGGCTGGGGAAGATCC
TAGGGTGAAGACCAAGGAGGGTTACACACCGATGTTTATTGCGGCTCATT
GTGGGCATGTTAGTGTGGTACGTGAGCTTCTCGCAAGAGGAGTAGATGGA
GAAGTAAAGACATTGGTGGTCCGAAAGCTGGGCGGGAGTGAATGTGACCA
GGTGGTATGGCCCCCAATTGACAGCATTACCCCCGTCTACATCGCTGCTG
AGTGTGGGCATGCCGAAATTGTGCGAGAGCTGGTAGTGAAGCAGGCGGAC
GCCCACAGATTAAGGACAGATGCAGGTCTGTCACCCCTGTGCATTGCTGC
CAGTAAAGGCCACATAGAGGTGGTGCGGACCCTGCTTGGGTGTGGAGCGG
ACTTTCGGGTGAACTGGAAAGGAGGTATCTCTCCACTATTTCGTGCCGCT
CAGAACGGACACCTACTTGTCCTAAAGGAGCTGTTAGAGGCTGGGGCAGA
CCCGCAGGTGCGAACGCAAAACCATCTCACCCCCTGCTATATAGCCGCGC
GGAATGGGCACGAAAAGGTAGTGCAAGAACTCTTAAAAGTTGAATCACAC
CGTGGAGGGGTCGCAAGGACGTGGTGTTCTCGCTTGTTGTCTGGTCCTCA
AGAAAGGGTGAACGCAACCCAGGATAGACTCACGGGTCAGAATAGGAATA
GCAGTATTGCAATGGGCTTCACCCCGATCCATATTGCTGCAAGCAGAGGA
CATACAGGAGTCGTAAAGGAGCTGCTCGGGGCTGGGAGATCTCCTACTGT
GAAAACAGAAGCAGGTTTTACCCCTCTCCTACTTGCTTCCAGAAATGGAC
ACGTGAATGTAGTGAGGGTCCTACTGAATGCTATGTTAGACAAGATCCTT
CTAGACATTGAAACAAAGGCTCAACTCTCCCCCATTTATGTTGCAGCAGA
GTTTGGGCACATTGATGTTCTGAAAGAGTTGCTGTTGGCAGGGGAGGACC
CTGATGTAATATTCGAGAATGGACTAACTCCTCTATATGCTGCTGCACGT
AATGGGCACACTGCTGCGGTTAAAATCCTGTTAGTTCTCGGAGACTGTCT
CAATACAATGGTTAGACCTAAACCTAAATTTAGATTTTTCCACCACGTCT
GTAGCTTGGGATTATTACTCCGTAGCTGGAGAGTTATGGAAGGCACTCAA
GTGGCAAATGAAGTAGGGTTCACACCCCTCTATGCCGCAGCTGAGAAGGG
ACATGTAGAGATTGTGCAGGAGCTGCTTGGGGCAGGAGCAGACCCTCAAG
CAAGGTCACCAAATGGGTTCATCCCGATTTCAATTGCTGCCTCAAATGGG
CACCTGGAAGTTGTGAAGGCATTTATTGAGTGTACTGAAATCAACCATAC
AACTAACAGAGAGGGTATTATTACCCCCTTAGATGCAGCTGTGGAACAGG
GACGTGTTGATGTGGTGCGGGCGTTGCTTGTGGCGGGGGTTGACCCTACA
ATGGAGCATCTCAGTGAGGTTTTGACAGAGGATAATGGGACACTGATGCG
CATTCAAGGCATGTTGCCCAGGTTCCAAGCATACCATTCCCACTCCTGGC
AGTGGCCTGCTGCTAGCACTCCTCCAAAATCACTAAAGTTTGATAGGGAG
CACTGGGTCAGAACCAAGCTTGATGTCCAGTACAATGAGTGCAGTAAAGT
GTTTGAGGTCATCCACAGGTGTGTCAAATGA
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