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Homology
BLAST of mRNA_C-tenellus_contig7424.1.3 vs. uniprot
Match: A0A6H5JSQ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSQ9_9PHAE) HSP 1 Score: 146 bits (368), Expect = 4.000e-33 Identity = 116/383 (30.29%), Postives = 176/383 (45.95%), Query Frame = 1
Query: 634 GCAGIAHRDCWAGVYVSTLTGEVVLLTPEGRVLQSPGSTSSRTRGQDILWWGAKERTLEVIAYNGHGFT----LSK--KGTFQHMSMPAATIEETELIFESVSGTTSNSTESGPEQAFSLVRDNAGFVFPGCLYILSLPAWTRYP-GDPTTVRVILSDDGWIADVGG----TNW------------KAAWSHGNGATTEMRGGQFLSLSLGRSHQGDQEGRVLTLYTPDGGRTWIESTPPGQGAGIGKPVAV-----LSLEAPANVTLFPASPPIEPLLKHLSGYDGAREE---PVESGGRGDAGNNRGKTKVGGKLEEIVSVFEGQPLLLGRPAPGSLTRSGFLVVISRAVPRPKEKKEDLLCWFDGVGASAIWISWSMVLC 1689
GC + + CWAGVYV T E+ L GRV SPG+ ++ + WW A+E L N F+ +SK + + ++ T E + I ++V G S SG LVRD GFVFPGC+Y+LS+ + + + V V+L+ DG + G W +W+ GN FL + L + R + L + DGGRTW+ + + K V LSL AP +++FP + + PL+++L+G + +E P+ + + L+ +V VFE QP+ L G+ ++VISRAVPRP + + DL C +GV A+W+SW MVLC
Sbjct: 3 GC--VEGKRCWAGVYVDMATNEIWHLETGGRVYLSPGTAAADPLRGCLRWW-AEEDLLHTADCNEKVFSRVDVVSKMRRDPARAGTLAGFTAEVSSTI-DAVRGDGSAPANSGGIGKIRLVRDPFGFVFPGCMYVLSMQSGSSSKMANSDGVSVVLNRDGTVTSTAGGERVARWLFPRKKSLAGTNDESWASGNQVLLRFNT-DFLQVGLPATAWEVGGSRDVRLSSSDGGRTWLPVSECNSQFKLEKDCDVDSRIILSLVAPLTLSMFPLTAAVSPLVRYLNGDNNFNQEMAPPIAT--------------LRNNLQPLVEVFEIQPIRLDGDHGGAPKNIEAIIVISRAVPRPTKGEGDLSCVINGVQTRAVWLSWGMVLC 366
BLAST of mRNA_C-tenellus_contig7424.1.3 vs. uniprot
Match: D7G5V6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5V6_ECTSI) HSP 1 Score: 59.7 bits (143), Expect = 3.660e-6 Identity = 45/143 (31.47%), Postives = 63/143 (44.06%), Query Frame = 1
Query: 895 ETELIFESVSGTTSNSTESGPEQAFSLVRDNAGFVFPGCLYILSLPAWT-RYPGDPTTVRVILSDDG-----------------WIADVGGTNWKAAWSHGNGATTEMRGGQFLSLSLGRSHQGDQEGRVLTLYTPDGGRTWI 1269
E ++V G S SG LVRD GFVFPGC+Y+LS+ + + R + V V+L+ DG W +GGTN +W+ GN F + L + R +TL + DGGRTW+
Sbjct: 17 EVSSTIDAVGGDGSAPANSGGIGKIRLVRDPFGFVFPGCMYVLSMQSGSSRKMANSDGVSVVLNRDGTVTSTTGGERVARWFFPWKKSLGGTN-DESWASGNEVLLRFNT-DFSQVGLTATAWEVGGSRDVTLSSSDGGRTWL 157
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Stop | 1 |
Start | 1 |
Model size | 1909 |
Hectar predicted targeting category | other localisation |
Exons | 4 |
Cds size | 1377 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1680790035.562706-UTR-C-tenellus_contig7424:392..710 | 1680790035.562706-UTR-C-tenellus_contig7424:392..710 | Choristocarpus tenellus KU2346 | UTR | C-tenellus_contig7424 393..710 + |
1680790035.6359334-UTR-C-tenellus_contig7424:5902..6116 | 1680790035.6359334-UTR-C-tenellus_contig7424:5902..6116 | Choristocarpus tenellus KU2346 | UTR | C-tenellus_contig7424 5903..6116 + |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1680790035.5744128-CDS-C-tenellus_contig7424:710..979 | 1680790035.5744128-CDS-C-tenellus_contig7424:710..979 | Choristocarpus tenellus KU2346 | CDS | C-tenellus_contig7424 711..979 + |
1680790035.5877602-CDS-C-tenellus_contig7424:1326..1948 | 1680790035.5877602-CDS-C-tenellus_contig7424:1326..1948 | Choristocarpus tenellus KU2346 | CDS | C-tenellus_contig7424 1327..1948 + |
1680790035.611574-CDS-C-tenellus_contig7424:3866..4268 | 1680790035.611574-CDS-C-tenellus_contig7424:3866..4268 | Choristocarpus tenellus KU2346 | CDS | C-tenellus_contig7424 3867..4268 + |
1680790035.6266677-CDS-C-tenellus_contig7424:5818..5902 | 1680790035.6266677-CDS-C-tenellus_contig7424:5818..5902 | Choristocarpus tenellus KU2346 | CDS | C-tenellus_contig7424 5819..5902 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-tenellus_contig7424.1.3 >prot_C-tenellus_contig7424.1.3 ID=prot_C-tenellus_contig7424.1.3|Name=mRNA_C-tenellus_contig7424.1.3|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=459bp
MSLRVGSSLLARRGRDATPGNACAGTMAFSPKRDFVRFQGKKQRQSMPSP RVRCALVGLLLLAALLVLKVLKREDLRGNQPNQPQAETERGQEKGGLQPP PGFSTGCAGIAHRDCWAGVYVSTLTGEVVLLTPEGRVLQSPGSTSSRTRG QDILWWGAKERTLEVIAYNGHGFTLSKKGTFQHMSMPAATIEETELIFES VSGTTSNSTESGPEQAFSLVRDNAGFVFPGCLYILSLPAWTRYPGDPTTV RVILSDDGWIADVGGTNWKAAWSHGNGATTEMRGGQFLSLSLGRSHQGDQ EGRVLTLYTPDGGRTWIESTPPGQGAGIGKPVAVLSLEAPANVTLFPASP PIEPLLKHLSGYDGAREEPVESGGRGDAGNNRGKTKVGGKLEEIVSVFEG QPLLLGRPAPGSLTRSGFLVVISRAVPRPKEKKEDLLCWFDGVGASAIWI SWSMVLCR* back to topmRNA from alignment at C-tenellus_contig7424:393..6116+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_C-tenellus_contig7424.1.3 ID=mRNA_C-tenellus_contig7424.1.3|Name=mRNA_C-tenellus_contig7424.1.3|organism=Choristocarpus tenellus KU2346|type=mRNA|length=5724bp|location=Sequence derived from alignment at C-tenellus_contig7424:393..6116+ (Choristocarpus tenellus KU2346) ATGAGAAGATGAGGAACTTTGGATTGACAAGAAGGAGTACCATATGTGAT
CGATAGGGGAATAGGGGGCAGGTTCGGGAACAGGCGAGTATTGACGGCGA
ATGTGGGTGGATAGTGATTTTCATTGTCCTATGAAACCACCCTGTCCGTA
CTTCTGTCCACTTGTGGTACGGATTTTACCAACTTTGTTAGCACTACCCA
ATCGTGAGAACTATTGCAGTTCTCAAGTGTCTTGACTTAAGTGTGACAAC
AAGGGTTGCAGATTGTGGTGTGCCAGCGGAGTTCTAGCGCTTCCTGTATT
ATCCCTTCGTCGTCCCAAATGAGTTTACGTGTAGGGTCCAGCCTTCTTGC
ACGTAGAGGGAGAGATGCAACTCCCGGCAATGCTTGCGCTGGTACGATGG
CTTTCTCTCCTAAACGCGACTTCGTGCGGTTCCAAGGAAAGAAACAACGC
CAGTCAATGCCTTCACCTCGAGTACGCTGTGCTCTGGTGGGTCTGCTTCT
GCTGGCGGCACTGTTAGTGCTAAAAGTGCTCAAGAGGGAAGATCTTCGTG
GGAACCAACCAAATCAACCACAAGCAGAGACCGAAAGGTGGGGATGTCTG
CATGAGGGAACCCACATGCCTCAACTGTCGTATCAGCCTGCTTGAGACAT
AGTACTTGAAAGAAGCTCTAGCCCATACCATTATTTCCCCACAAATGGTG
TATATAGGACATGTATTATCCTTACTGACTCCTTGGCTGTCACTGAGGTG
TTGACGGCCACGCTGTAGGACGTTCCACTTCTTTTGAACCATCTGTTTGA
TGTCTCACTGACTCCCCCAATGCGACGGCATGCAACGAGCATGATAAATA
TCACTCGATACTGCCATTATCGCTTTTGCAAACGCCTGAAATGGACGAGG
GACTCCGCCGATGCCATCTTGATATTCCTGCCAGAGGCCAAGAGAAAGGA
GGGTTGCAACCACCTCCAGGATTCTCAACAGGTTGCGCTGGGATAGCCCA
CCGAGACTGTTGGGCTGGAGTTTATGTAAGTACGCTGACAGGAGAAGTAG
TCTTGTTAACGCCAGAGGGGCGAGTTCTTCAATCTCCAGGGTCCACCTCA
TCACGGACGAGAGGTCAAGATATCCTGTGGTGGGGAGCCAAGGAGAGAAC
TTTGGAGGTGATCGCTTACAACGGGCATGGGTTTACACTATCCAAAAAGG
GGACATTCCAACACATGTCCATGCCTGCTGCAACGATTGAAGAAACTGAG
TTAATTTTTGAGTCGGTGAGTGGTACAACATCAAACAGCACAGAATCTGG
ACCGGAGCAAGCATTTAGCCTAGTGCGTGATAATGCTGGTTTTGTGTTTC
CTGGCTGCTTGTACATACTCAGCCTTCCTGCGTGGACAAGATACCCAGGA
GATCCAACAACTGTTCGTGTTATCCTGAGTGATGATGGGTGGATTGCAGA
CGTAGGAGGTACCAATTGGAAAGCTGCATGGTCGCATGGGAACGGAGCAA
CAACAGAGATGAGGGGGGGTCAATTCTTGAGTCTTTCACTGGGCAGATCT
CACCAGGTACGGTCACTTCAGGGGTGCATTGACCAAATAATTATTTGTGT
TTAGCAGAGCTCTATGTTAGGCTGGGCAGTTGTGAAAGATATAGTTAAAA
CAGCAGCCTGCTTTCTCACGTTGTGGAAGGTTCAGTCTGACTATTGAATG
TGAGTGTATTGGGCTGATCCAAGCGGTGGGACCGATCTGGACATGCTTTT
TATGGGTCGCATAGAAAATTTCGAAATGTATCCACTGTGTTTGCAAGATT
TATTTGCTTCCTCTAGTTTTCGTTTTGTTATGTCCACCTTGCAGTCTGAT
ATACAGTAGTCAGGACAGAGTCAGGTAGGGACAGGGCTCAATGTGTTCTG
GCAGGGTTGATCCAATGTAGAGTATTTCTGGCAGTCAACTGTTCCTATGG
CCTGGTCCTGCGGTCTATCCTGTGACCCTGGACTGGACTGCTGCCCGATG
TAGAGCCTTGTTCCATTGGGGAAGTATAATTTCCTAGAGTCTCGCAAATT
TGTTCAATTTCAATATTTTTCACTCCTCAGGAAAATGTAATGCTTCTCAA
CCTATAACGCTTCTGGATAAAAAATTGGCATATTTGAGGTACAGTGTACC
TTATCCATTACAAGGTCGTGTGTGTCGTTATAGTATTTGTTTGGACAATG
TTCTGTGTCCAGCTGCTTTATATCGTCTGTTCTCCATGCAATCAATGCCA
GAGTCGATTTGCTCTATATTAGCAACCGTTGTCAAGCGCAAGGCTTGTGT
GTAACGCCTGTTATCAAGGCAATTCTTTTCCGGTGCGATTCGCTGCGTAA
TGGTTCCGTTTGCTGAATTATTATTCCGTGTGTGAAGGGGTCCACTCTTT
CGGTATTTTTTGTTGTTCCACGAATTGGTTTGGTTCTTTTACAAAGCAGA
GGAAGCGATCAATGGAAAATTAGTATGGGAAGAGAGAGAGAGAGGATGTA
CGTCGATAACAAAAAAAGAAAAAAAACCCTACAAAAAATGCTTCTGTTAT
ACTTGCCCGTAACTTCCACGGTCCTGGACAGTGCTCAGGATCACTTGCTC
TATAATGTCTGTTGTTCGATGAATGGTTCCGCCAAAGCAGTCTCTTATAT
CTGTTGTTTTTGGACAATGCTCTTGGCCATGTGCTCTGTAGCATCTGCTG
CATGGACAGCGTGTTGGTTTGGATGCTCTGATTTGTGAGTGGTGTTGAAC
AAAAAGTAGATGTAGAGTAATTGCCAGAGCTCTGAAGTAATTGATTCTTT
CTTAAGCAGGCCTCAATTTACGCACAAGAATCAAATATCGTGGAAGGGTC
TGTCGGAACTAAGCACTGCTAATATATACAGAAGATTAATTCTTTTTGAA
TTAGAGGAACTGTTTTATATGTTGGTGGTAAGGCAGTACCTTTTCTCCTC
TGAACTTGAGAGTTCAAACCCGGGTGGCGTCAAATGTTTTTCCTGAATGT
TTGGTTTTGTTGAACTGTGTGACAAGTAAAACGAACCGTACACCTGAACA
TTATTGTTCTAATACAAGACCAAAACGCATCGAAAAACCTTCGACGTGGT
GGCAAGAGTTCATTGCAGCTGCAGCCGAGCTCATTGCAGCCGAGTACGGC
ATTAACAAAAGATAGTAGTATAGCGCAGTGTGCAGTGGGTCTGACCGCAG
GTTGGAGCTAGTTAGAGTTGAGCTTTATTACTACTCCGTGGCACTCCATA
GTCCCAGACAAGAGTGCAGATATCCACTAGTATTGGATTGAGAAAGGAGC
TTTGTCTCTTGTGAGCAGCCGCCCCTGCGAGGATGTGTTCCTTGGTAAAA
CCCTCCCAATAGTATTTACCGTGGCTGTATGGACTTTGTTGGAAGGCGTA
ATGGAACATCTAATCTTTTCTTTGTTGTTGTGATGGTCCATGTGCACCCT
CCCATCCTACCTTCGGCGAGAAAGGGCGACCAAGAGGGAAGGGTCCTCAC
ACTATACACGCCAGATGGTGGGAGAACCTGGATAGAGTCTACGCCACCGG
GGCAAGGGGCCGGCATTGGTAAGCCTGTTGCGGTGCTAAGCCTTGAGGCA
CCTGCCAATGTCACACTTTTTCCTGCTTCACCACCTATTGAACCCTTGCT
GAAACACCTCTCGGGATATGATGGTGCTCGTGAGGAGCCTGTGGAAAGTG
GGGGCCGAGGCGATGCTGGTAACAACCGTGGCAAGACCAAGGTAGGTGGG
AAGTTGGAGGAAATCGTCTCCGTGTTTGAGGGTCAGCCTTTGCTGCTGGG
AAGGCCGGCACCAGGGTCGTTGACAAGATCTGGCTTTCTTGTTGTGATAT
CCAGGGCAGTGCCGAGGCCAAAGGAGGTAAGGGTTAGGGTTAGGGTACTT
GCTATTCATTGATTTAGTGAAGGCGTTGTTGCAGGAAAGTAACTAACTAT
ATATATATATATATATATATATAAATAGCCAGAATATGATTGGCGGTATG
GTGATGTTGAGGGCAAAGGAGAGTTCCCACCAACCAGATGTTGAGGGGAT
TGGTAGACTGGTACGGAATGATGAAGTATGCCACCAATGTACGAGTATTC
TGCTGACAGTGTATGTTTGATATTTCACGCCTTGGAATGCATAGCACTCA
ATAGTATGTTGTGCCCATCTAAGAATGATAGGAAGCACGTTATTGAGATC
CACAAAGAAGAAGAAGAAGAAAAAAAAACAAAAAACAAAAAATATTCGAA
AAAAAACAAGAAACCGGTTCCGACCAAAAAGGTACTGTATATCATGACGC
TTACGGCGAAAACAGGTGAAGCACGATTTAGTGTCTGTGACACTCCAGTC
CGAAATATCTGTAACGCTATGTAGCGCCTGTAACACTCCAGTCCAAAACA
AGTCCAACACTATGTAGTGCCATTACATCTCCAGACCAAGTCATACACAC
GTTATGTACCTAACACCTTGTGTTAACATAGTGTCACAAAAAGTGCTATG
TTGTCCATGGTGTGTGGAAATATGTGAGATATCGTCATCCATTCTTCTTA
TAGTCATTCCGTTCTGCTGACTCTATCCCTTCTACAATTACATCCCTGAC
TTTTTTATTTTGTTTTTATTGAATGAAAAGTCTCGGACAGATCATGTTTC
GTAGTTGTATGTATTCACTGCTGTGTGCGTCCTGTCTCATCATGCACAAC
TGAGACTCGAAAAATAAATAAATATAGAAGATACTTTAATATTTCACACA
CTATTTTTTTTCTTTTTCTGAGGTATAATGTATATTATTATTTTTTTAGT
TGAAGGATGCGAACGTGCCTCGAGTGTAACTGTTATTTTTTTTAACCTGT
TTTCCCAATATATATATATATATACATATATATATTTATATTTTTTGTAA
TCTACCGCACAGAATAATTTCCCGTAAAAATTCTTTCATGTGAGCTTTAG
AAATTTCATGAGCCTTTTGTCTGTGACTGTTTTTGGTTGGTACACATACA
TACATACATACATACATTTTTTTTATTGTGTCACAAAAAGGGTAAAATAG
TAGGGCAATACATTAATGTGAGTGAGTACCCCCCCTCCCCCCCCACTACT
GATCAAATCTGACCAATCAATCGTAAGGTGCGGTCCACAGTTTCTTTTGT
TGCTTGTTAAAACTGGTATTATAGGGTTAGAATCGAGATTTAGGTTAGGG
TTAGGGGTTAGATTGGACTTTTTTTGAGCGGCATATTGTACTCTGGACAA
CTACACAACCGTGGGCGAAGTCTACATTGCATATATATATATATCTATAT
CTTACATGGAACAGCAAAGTCTGCCCAGATTTGTGAGAGTCCAGTGTCAA
TAGCGTAGCATCACTCACAGTTTCCTGTATGTTATGTTTGTGTTGTGTTA
CGTAACCTTACCACAACCGTGCACAGAAAAAAGAGGACTTGCTATGCTGG
TTTGATGGAGTTGGAGCCAGTGCTATCTGGATCTCATGGAGTATGGTTCT
ATGCAGGTGAGGGTAAGTAGACCTTGACCCATAATTGGTGTTTTTTGTTT
TGTTTTGAATGGAGTAGCAGAGGCTCACTGCATTTGGTATAGTTAACAGT
TTTTTTTGAGACAAGGATATTGGAATGTGATACAACTGGAAGACACGTGC
TGTAGCATCATCTGGAGTGCTCTGGAGCCCTTCTTGTGGCAGTATTTACT
TTCAGTACAACGGGCACATCTACC back to topCoding sequence (CDS) from alignment at C-tenellus_contig7424:393..6116+ >mRNA_C-tenellus_contig7424.1.3 ID=mRNA_C-tenellus_contig7424.1.3|Name=mRNA_C-tenellus_contig7424.1.3|organism=Choristocarpus tenellus KU2346|type=CDS|length=1377bp|location=Sequence derived from alignment at C-tenellus_contig7424:393..6116+ (Choristocarpus tenellus KU2346) ATGAGTTTACGTGTAGGGTCCAGCCTTCTTGCACGTAGAGGGAGAGATGC AACTCCCGGCAATGCTTGCGCTGGTACGATGGCTTTCTCTCCTAAACGCG ACTTCGTGCGGTTCCAAGGAAAGAAACAACGCCAGTCAATGCCTTCACCT CGAGTACGCTGTGCTCTGGTGGGTCTGCTTCTGCTGGCGGCACTGTTAGT GCTAAAAGTGCTCAAGAGGGAAGATCTTCGTGGGAACCAACCAAATCAAC CACAAGCAGAGACCGAAAGAGGCCAAGAGAAAGGAGGGTTGCAACCACCT CCAGGATTCTCAACAGGTTGCGCTGGGATAGCCCACCGAGACTGTTGGGC TGGAGTTTATGTAAGTACGCTGACAGGAGAAGTAGTCTTGTTAACGCCAG AGGGGCGAGTTCTTCAATCTCCAGGGTCCACCTCATCACGGACGAGAGGT CAAGATATCCTGTGGTGGGGAGCCAAGGAGAGAACTTTGGAGGTGATCGC TTACAACGGGCATGGGTTTACACTATCCAAAAAGGGGACATTCCAACACA TGTCCATGCCTGCTGCAACGATTGAAGAAACTGAGTTAATTTTTGAGTCG GTGAGTGGTACAACATCAAACAGCACAGAATCTGGACCGGAGCAAGCATT TAGCCTAGTGCGTGATAATGCTGGTTTTGTGTTTCCTGGCTGCTTGTACA TACTCAGCCTTCCTGCGTGGACAAGATACCCAGGAGATCCAACAACTGTT CGTGTTATCCTGAGTGATGATGGGTGGATTGCAGACGTAGGAGGTACCAA TTGGAAAGCTGCATGGTCGCATGGGAACGGAGCAACAACAGAGATGAGGG GGGGTCAATTCTTGAGTCTTTCACTGGGCAGATCTCACCAGGGCGACCAA GAGGGAAGGGTCCTCACACTATACACGCCAGATGGTGGGAGAACCTGGAT AGAGTCTACGCCACCGGGGCAAGGGGCCGGCATTGGTAAGCCTGTTGCGG TGCTAAGCCTTGAGGCACCTGCCAATGTCACACTTTTTCCTGCTTCACCA CCTATTGAACCCTTGCTGAAACACCTCTCGGGATATGATGGTGCTCGTGA GGAGCCTGTGGAAAGTGGGGGCCGAGGCGATGCTGGTAACAACCGTGGCA AGACCAAGGTAGGTGGGAAGTTGGAGGAAATCGTCTCCGTGTTTGAGGGT CAGCCTTTGCTGCTGGGAAGGCCGGCACCAGGGTCGTTGACAAGATCTGG CTTTCTTGTTGTGATATCCAGGGCAGTGCCGAGGCCAAAGGAGAAAAAAG AGGACTTGCTATGCTGGTTTGATGGAGTTGGAGCCAGTGCTATCTGGATC TCATGGAGTATGGTTCTATGCAGGTGA back to top
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