mRNA_C-tenellus_contig741.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig741.1.1
Unique NamemRNA_C-tenellus_contig741.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig741.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig741contigC-tenellus_contig741:4046..4690 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size645
Hectar predicted targeting categoryother localisation
Exons1
Cds size339
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790035.3347285-UTR-C-tenellus_contig741:4045..40631680790035.3347285-UTR-C-tenellus_contig741:4045..4063Choristocarpus tenellus KU2346UTRC-tenellus_contig741 4046..4063 +
1680790035.359613-UTR-C-tenellus_contig741:4402..46901680790035.359613-UTR-C-tenellus_contig741:4402..4690Choristocarpus tenellus KU2346UTRC-tenellus_contig741 4403..4690 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790035.3466005-CDS-C-tenellus_contig741:4063..44021680790035.3466005-CDS-C-tenellus_contig741:4063..4402Choristocarpus tenellus KU2346CDSC-tenellus_contig741 4064..4402 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig741.1.1prot_C-tenellus_contig741.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig741 4064..4402 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig741.1.1

>prot_C-tenellus_contig741.1.1 ID=prot_C-tenellus_contig741.1.1|Name=mRNA_C-tenellus_contig741.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=113bp
MYVPDTIHEGDMRNGRLFDKHYCLSFHTAVPTSYCHSPIHMSTCKLANSI
SRIVQQMYEQQNTSVGLTVSGPACVLPTLAEKRLQPSQHVDAAGGLLVPS
SLQPPSSPSDRD*
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mRNA from alignment at C-tenellus_contig741:4046..4690+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig741.1.1 ID=mRNA_C-tenellus_contig741.1.1|Name=mRNA_C-tenellus_contig741.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=645bp|location=Sequence derived from alignment at C-tenellus_contig741:4046..4690+ (Choristocarpus tenellus KU2346)
CAATGTCAAAGGCTTGTTATGTATGTGCCAGATACGATTCATGAAGGAGA
CATGAGGAATGGCCGCCTCTTTGACAAGCACTATTGCCTAAGCTTTCACA
CGGCCGTCCCAACATCCTACTGCCATTCGCCCATTCACATGTCCACTTGC
AAGCTTGCCAATTCCATATCCCGCATTGTTCAACAAATGTATGAGCAGCA
GAACACAAGTGTTGGACTCACCGTCTCAGGGCCAGCTTGTGTCTTGCCCA
CACTCGCAGAAAAAAGGTTGCAGCCCTCGCAGCATGTAGATGCTGCCGGC
GGGCTGCTAGTTCCCTCCTCGCTGCAGCCACCCTCATCACCCTCTGATCG
AGATTGACAATAATGTAGAGGGTGGGGTAGAGGCAATGGGACAGGATTAG
GAGGTCTCCATGCAGTTTGGGGGCTAGTATGATGACAGAGGTCGGACCTT
GATGGACATCAAAGCTGGGGTGTGGGGTTGAAGGCTGGTACTTGGAGGTT
AGGGTAGTGTTGAGCACTGGGAAGCAATTTGAGTGGAGGAGTAACTTGAG
AAGGAGAAGGGTTGTGTCTTGGGATGTCTCCCTTCCCATGAGGTTATTCC
AAGCTTTCAACACAGGGTACATAGTCAGTGCTCCCCAGTTTACCA
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Coding sequence (CDS) from alignment at C-tenellus_contig741:4046..4690+

>mRNA_C-tenellus_contig741.1.1 ID=mRNA_C-tenellus_contig741.1.1|Name=mRNA_C-tenellus_contig741.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=339bp|location=Sequence derived from alignment at C-tenellus_contig741:4046..4690+ (Choristocarpus tenellus KU2346)
ATGTATGTGCCAGATACGATTCATGAAGGAGACATGAGGAATGGCCGCCT
CTTTGACAAGCACTATTGCCTAAGCTTTCACACGGCCGTCCCAACATCCT
ACTGCCATTCGCCCATTCACATGTCCACTTGCAAGCTTGCCAATTCCATA
TCCCGCATTGTTCAACAAATGTATGAGCAGCAGAACACAAGTGTTGGACT
CACCGTCTCAGGGCCAGCTTGTGTCTTGCCCACACTCGCAGAAAAAAGGT
TGCAGCCCTCGCAGCATGTAGATGCTGCCGGCGGGCTGCTAGTTCCCTCC
TCGCTGCAGCCACCCTCATCACCCTCTGATCGAGATTGA
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