mRNA_C-tenellus_contig7407.1.1 (mRNA) Choristocarpus tenellus KU2346
Overview
Homology
BLAST of mRNA_C-tenellus_contig7407.1.1 vs. uniprot
Match: D8LCY6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCY6_ECTSI) HSP 1 Score: 150 bits (380), Expect = 3.030e-36 Identity = 104/267 (38.95%), Postives = 141/267 (52.81%), Query Frame = 2 Query: 347 WREAHGGPDEQGHSLVNRRIRIWWDGDSAFYNADVVAYVSETGKHKVIYVE-DTDIYEEDLSPGKQRWELLDGSASQERRDLPG-----RAAKPTSFNAAHFTSPSSSGKKATYADMALEAIADMKDKNGSSLPSIRKWIQNNFTETREKQKASFNSLSIKALAKLVSDGVLEKVKHSFRLSQDYLREEKRREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGETWEANKQMRQNYERRIQKRNEFLSER 1129 W EA +E+G +L+ RIRIWWDGD Y S T KH++IY DTD+Y EDL G ++WE+ + E PG +A +S + T+P+ G+K+ Y M LE+I+ + +K+G SLPSIRKWIQ+ ET+EKQKASFN+L+IKA+ KLVS+GV+EKVKHS+RL + +EK GE EAN++MR E +KRNEFLS+R Sbjct: 6 WEEAK--EEERGAALIGSRIRIWWDGDMVXXXXXXXGYDSATAKHQLIYDGVDTDVYIEDLESGSEQWEIERATEGGE----PGAAEAKKAVGESSQSGGGATTPT--GRKSKYLTMVLESISALNEKSGVSLPSIRKWIQDKHPETKEKQKASFNNLTIKAVMKLVSEGVVEKVKHSYRLFPKCVADEK-----ASAKEEPRRKGGSTPAVLTPQAKTGRKPSGTGRKPAAPRATGGRGEAAEANRKMRATMEEVARKRNEFLSKR 259
BLAST of mRNA_C-tenellus_contig7407.1.1 vs. uniprot
Match: A0A6H5KTV3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTV3_9PHAE) HSP 1 Score: 148 bits (373), Expect = 2.520e-35 Identity = 106/270 (39.26%), Postives = 139/270 (51.48%), Query Frame = 2 Query: 347 WREAHGGPDEQGHSLVNRRIRIWWDGDSAFYNADVVAYVSETGKHKVIYVE-DTDIYEEDLSPGKQRWELLDGSASQERRDLPGRAAKPTSFNAAHFTSPS------SSGKKATYADMALEAIADMKDKNGSSLPSIRKWIQNNFTETREKQKASFNSLSIK--ALAKLVSDGVLEKVKHSFRLSQDYLREEKRREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGETWEANKQMRQNYERRIQKRNEFLSER 1129 W EA +E+G +L+ R+RIWWDGD Y S T KH++IY DTD+Y EDL G Q+WE+ ER G + AA +S S S+G+K+ Y M LE+I+ + DK+G SLPSIRKWIQ+ ET+EKQKASFN+L+IK A+ KLVS+G +EKVKHS+RLS + +EK GE EAN++MR E +KRNEFLS+R Sbjct: 6 WEEAK--KEERGAALIGSRVRIWWDGDMVXXXXXXXGYDSATAKHQLIYDGVDTDVYIEDLESGSQQWEI-------ERAIEGGEPGAAEAKKAAGESSQSGGGATTSTGRKSKYLTMVLESISALNDKSGVSLPSIRKWIQDKHPETKEKQKASFNNLTIKVQAVMKLVSEGAVEKVKHSYRLSPKCVADEK---ASAKAEPRRKGGSTPAVITPQEEAKTGRKSSGTGRKPAAARAAGGKGEASEANRKMRATMEEVARKRNEFLSKR 263
BLAST of mRNA_C-tenellus_contig7407.1.1 vs. uniprot
Match: W7TYI9_9STRA (Swi snf matrix actin dependent regulator of subfamily member 1 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TYI9_9STRA) HSP 1 Score: 85.9 bits (211), Expect = 2.370e-14 Identity = 66/234 (28.21%), Postives = 110/234 (47.01%), Query Frame = 2 Query: 347 WREAHGGPDEQGHSLVNRRIRIWWDGDSA--FYNADVVAYVSETGKHKVIYVED---------TDIYEEDLSPG------------KQRWELLDGSASQERRDLPGRAAKP-----------------------TSFNAAHFTSPSSSGKKATYADMALEAIADMKDKNGSSLPSIRKWIQNNFTETREKQKASFNSLSIKALAKLVSDGVLEK-VKHSFRLSQDYLREEKRRE 907 WRE G E+ LV ++I++WW+ D FY VV Y + +V+Y +D +++++E L ++R + +G A R + G P ++ N + KATYAD+ +EA+ ++ ++G+SL +IRKWI + E KQKASFN+L+ KA+ KL ++ V+++ K SFR S YL E+ ++ Sbjct: 3 WRE--GTATERTQQLVGQKIKVWWEDDEGGHFYPGQVVGYKEDEDVFQVVYDDDAQPQASGKQSEVFDEKLEDPWLIADVPTRRITRERERMANGGAGATRSAVSGATKAPAPXXXXXXXXXXXXXXPLMPQGASTLNLIKNLPKTKITGKATYADLIIEALKELHGRDGASLVAIRKWICKHNAEAASKQKASFNTLTKKAILKLEAEDVVQRNTKSSFRFSPSYLFREREKQ 234
BLAST of mRNA_C-tenellus_contig7407.1.1 vs. uniprot
Match: A0A7R9Y7W9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9Y7W9_9STRA) HSP 1 Score: 76.6 bits (187), Expect = 2.410e-11 Identity = 59/207 (28.50%), Postives = 103/207 (49.76%), Query Frame = 2 Query: 347 WREAHGGPDEQGHSLVNRRIRIWWDGDSAFYNADVVAYVSETGKHKVIYVEDTDIYEEDL-------------SPGKQRWELLDGSASQERRDLPGRAAKPTSFNAAHFTSPSSSGKKATYADMALEAIADM-------KDKNGSSLPSIRKWIQNNFTETREKQKASFNSLSIKALAKLVSDGVLEKVKHSFRLSQDYLREEKRRE 907 W GP G +L RR+ +++ G++ ++ A V Y +ET V Y D ++ + +PG++ G++ PG+AA+ +A + TYADM ++AI+++ ++G +LP+IRK + + E ++KQ+ASFNSL++KA+ +L++ VLEK +R DY+ KR E Sbjct: 38 WAPPDTGP--MGAALEGRRVAVYYHGEAQYFEAVVRRYHAETDTFTVEYESDPGLFFVETLGDDYHVYVGPEPAPGRKLIVPGPGASVPSTAQAPGQAAE----SALDQQKKGKAKGNRTYADMCMDAISNLGATHGGRAARDGFTLPAIRKSLMSVCPEVKQKQRASFNSLTLKAMQRLIAQSVLEKNGSQYRFHPDYIDRIKRAE 238
BLAST of mRNA_C-tenellus_contig7407.1.1 vs. uniprot
Match: A0A7S4AA51_9STRA (Hypothetical protein n=2 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AA51_9STRA) HSP 1 Score: 56.6 bits (135), Expect = 4.990e-6 Identity = 35/65 (53.85%), Postives = 45/65 (69.23%), Query Frame = 2 Query: 686 EAIADMKDKNGSSLPSIRKWIQNNFTETREKQKASFNSLSIKALAKLVSDGVLEKVKHSFRLSQD 880 +AI DMKD+ GSSL +I KWI++N E +E +K S ALAK V+DGVL KVK S++LS D Sbjct: 9 KAILDMKDRTGSSLVAINKWIESN--EKKEIKKHVMKS----ALAKAVTDGVLVKVKASYKLSPD 67
BLAST of mRNA_C-tenellus_contig7407.1.1 vs. uniprot
Match: K0SPF3_THAOC (H15 domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SPF3_THAOC) HSP 1 Score: 59.3 bits (142), Expect = 6.960e-6 Identity = 32/86 (37.21%), Postives = 51/86 (59.30%), Query Frame = 2 Query: 641 PSSSGKKATYADMALEAIADMKDKNGSSLPSIRKWIQNNFTETREKQKASFNSLSIKALAKLVSDGVLEKVKHSFRLSQDYLREEK 898 P+S +K TY +M EAI +KD+ GSS+ +I KWIQ+N T+ Q F KA+ K V D ++K+ ++S D+ +++K Sbjct: 190 PTSLSRKPTYVEMVHEAIRSLKDRKGSSIFAIGKWIQSNLHYTKPVQAKMFKIFINKAVNKGVKDSRFVRIKNHVKISSDWTKKQK 275
BLAST of mRNA_C-tenellus_contig7407.1.1 vs. uniprot
Match: A0A7S4IVS6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IVS6_9STRA) HSP 1 Score: 57.0 bits (136), Expect = 3.420e-5 Identity = 28/65 (43.08%), Postives = 41/65 (63.08%), Query Frame = 2 Query: 365 GPDEQGHSLVNRRIRIWWDGDSAFYNADVVAYVSETGKHKVIYVEDTDIYEEDLSPGKQRWELLD 559 GP G +++NR I++W++G+ +Y ADV Y ++TGKH VIY D EDL+ + W LLD Sbjct: 349 GPRGAGRAIMNRTIKVWYEGNQEYYVADVYNYDAKTGKHLVIYKSDLSESWEDLA--SETWMLLD 411
BLAST of mRNA_C-tenellus_contig7407.1.1 vs. uniprot
Match: A0A1E7FB62_9STRA (H15 domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FB62_9STRA) HSP 1 Score: 53.9 bits (128), Expect = 4.340e-5 Identity = 32/65 (49.23%), Postives = 45/65 (69.23%), Query Frame = 2 Query: 686 EAIADMKDKNGSSLPSIRKWIQNNFTETREKQKASFNSLSIKALAKLVSDGVLEKVKHSFRLSQD 880 +AI DMKD+ GSSLP+++KW+ ET EK++ + +S AL K V+DG L KVK S++LS D Sbjct: 9 KAILDMKDRTGSSLPALKKWL-----ETNEKKEIKKHVMSA-ALKKGVTDGDLVKVKASYKLSPD 67
BLAST of mRNA_C-tenellus_contig7407.1.1 vs. uniprot
Match: A0A7R9UE77_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UE77_9STRA) HSP 1 Score: 57.0 bits (136), Expect = 4.610e-5 Identity = 31/70 (44.29%), Postives = 42/70 (60.00%), Query Frame = 2 Query: 341 GTWREAHGGPD--EQGHSLVNRRIRIWWDGDSAFYNADVVAYVSETGKHKVIYVEDTDIYEE--DLSPGK 538 G WR+ H E+ LV RR+RI+WDG+ ++ V + ETGKHKVIY ++TD E DLS G+ Sbjct: 230 GDWRKPHESERVVERAEHLVGRRVRIFWDGNDGYFTGTVAEFSPETGKHKVIYDDETDSEELLCDLSLGQ 299 The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7407.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-tenellus_contig7407.1.1 >prot_C-tenellus_contig7407.1.1 ID=prot_C-tenellus_contig7407.1.1|Name=mRNA_C-tenellus_contig7407.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=269bp MADQGGTWREAHGGPDEQGHSLVNRRIRIWWDGDSAFYNADVVAYVSETGback to top mRNA from alignment at C-tenellus_contig7407:3481..6326+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-tenellus_contig7407.1.1 ID=mRNA_C-tenellus_contig7407.1.1|Name=mRNA_C-tenellus_contig7407.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2846bp|location=Sequence derived from alignment at C-tenellus_contig7407:3481..6326+ (Choristocarpus tenellus KU2346)back to top Coding sequence (CDS) from alignment at C-tenellus_contig7407:3481..6326+ >mRNA_C-tenellus_contig7407.1.1 ID=mRNA_C-tenellus_contig7407.1.1|Name=mRNA_C-tenellus_contig7407.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=807bp|location=Sequence derived from alignment at C-tenellus_contig7407:3481..6326+ (Choristocarpus tenellus KU2346)back to top |