mRNA_C-tenellus_contig7406.1.5 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7406.1.5
Unique NamemRNA_C-tenellus_contig7406.1.5
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7406.1.5 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7406contigC-tenellus_contig7406:2659..5748 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2561
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-28_003430.1
Cds size633
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7406.1.5prot_C-tenellus_contig7406.1.5Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7406 4297..5458 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790035.1443973-UTR-C-tenellus_contig7406:2658..42961680790035.1443973-UTR-C-tenellus_contig7406:2658..4296Choristocarpus tenellus KU2346UTRC-tenellus_contig7406 2659..4296 -
1680790035.2053676-UTR-C-tenellus_contig7406:5458..57481680790035.2053676-UTR-C-tenellus_contig7406:5458..5748Choristocarpus tenellus KU2346UTRC-tenellus_contig7406 5459..5748 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790035.1549737-CDS-C-tenellus_contig7406:4296..46471680790035.1549737-CDS-C-tenellus_contig7406:4296..4647Choristocarpus tenellus KU2346CDSC-tenellus_contig7406 4297..4647 -
1680790035.1689923-CDS-C-tenellus_contig7406:4792..49031680790035.1689923-CDS-C-tenellus_contig7406:4792..4903Choristocarpus tenellus KU2346CDSC-tenellus_contig7406 4793..4903 -
1680790035.1804218-CDS-C-tenellus_contig7406:5140..51761680790035.1804218-CDS-C-tenellus_contig7406:5140..5176Choristocarpus tenellus KU2346CDSC-tenellus_contig7406 5141..5176 -
1680790035.1899283-CDS-C-tenellus_contig7406:5323..54581680790035.1899283-CDS-C-tenellus_contig7406:5323..5458Choristocarpus tenellus KU2346CDSC-tenellus_contig7406 5324..5458 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7406.1.5

>prot_C-tenellus_contig7406.1.5 ID=prot_C-tenellus_contig7406.1.5|Name=mRNA_C-tenellus_contig7406.1.5|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=211bp
MLGCRIGERPWREMELSRGAEPSTMGGEGRRGGSSWMVELVAQRDAALIF
SRKLAQQLDSQATTLERRAKTAEQLREEAERVLFGCSMQIPNKRVQAPDI
NLRIAVLIGSSLLAWGLCAVVAVAGWPMAGLTMVRALLSVSRSCHDHTQS
FYVEPSGLHFFFKQILSMLCTSKLMFLHTDLLISHTFLWWCRPPTLALEN
RTFFFVALFA*
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mRNA from alignment at C-tenellus_contig7406:2659..5748-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7406.1.5 ID=mRNA_C-tenellus_contig7406.1.5|Name=mRNA_C-tenellus_contig7406.1.5|organism=Choristocarpus tenellus KU2346|type=mRNA|length=3090bp|location=Sequence derived from alignment at C-tenellus_contig7406:2659..5748- (Choristocarpus tenellus KU2346)
CCTCTCACAAGATATGATGAGAGGGAACTTTAGGTTTGCTGAAAGCACCC
ACCATGTCACAACTGGTGATTGTGAACATCCCCAACGACTGACTGGGCCC
TGCCTCACGACTGTGAAGTCTTTGTAATATTGTTTTGGTTTTGTCCTAAC
ACAACTCCAAGATGTCCAAGGACGAGTTGACCCAAAAGTTTCTCCATCAT
TGATTTCTACGAGTACTTTTCCACAGGGCGCTACAGGACGGCTATGTGCT
ACAATAATGGTGCTACAGAATTGTGGTCAACGAATGACTAATGTTGGGGT
GTAGGATAGGAGAAAGACCCTGGAGAGAAATGGAGCTAAGTAGGGGAGCT
GAACCTAGCACCATGGGTGGAGAAGGGAGGAGGGGAGGGTCCTCATGGAT
GGTCGAATTGGTCGCTCAACGTGATGTGAGTTAGAGTATATTAGGACAAA
CTTTCTGGAGACAATTTTTGTGAGAACAATTGACTGTCACATTTGCAATC
CTCATCGCCCCCAGCTAACTACACGATTCTGAAGTCGACCTGCTTCCGCT
TTTTGTACACATTCTTCCACAGGCGGCCTTAATTTTCTCCCGGAAACTTG
CGCAGCAGGTGAAGTTGAAAGGTGATACAAAGAGCAAATGGACATGGATC
ACGGAGTAGTCATGTACAATCTACTTCAACTCCCCCGTTTACCGTGGTGT
CCTAATCAAAACATAAGGAAGAGGATCAGCTAGCCAGTGATATGCATACT
TGTTGTTTGCTACGATCAAAGAAAGACAGGTGCACAGCACGTACAAACGC
TTTCCCATCTTCATGGTATTCCCTCCGTGTTTGCGATACATGAAGCTCGA
CAGCCAAGCGACAACTCTTGAGCGAAGAGCCAAAACAGCCGAACAGTTGC
GGGAGGAGGCCGAAAGAGTCCTATTTGGCTGCTCGATGCAAATACCTAAC
AAGCGGGTGAGAATTCTTTACTTGACACCAGGAATGAGGCGTTGAGCTGA
TCGATGATGTATACTACCTACTTTGGATTATGTCGATCGAGGAATACAGA
GTAGCCCTGCAATGACGGAATTTCACATGCTGATCATTGTCGATTTGGTA
GGTCCAGGCCCCGGATATCAATCTTCGGATTGCTGTCCTTATCGGCAGCT
CTCTCTTGGCATGGGGTCTGTGTGCAGTTGTTGCTGTGGCTGGATGGCCC
ATGGCGGGCCTAACCATGGTGAGAGCATTGTTGAGTGTCTCAAGGTCGTG
CCACGATCATACCCAGTCATTCTATGTAGAACCAAGTGGCCTACATTTCT
TTTTCAAGCAAATCTTGTCAATGCTATGCACATCAAAGTTAATGTTTCTT
CATACAGACCTGCTGATATCTCATACATTCCTGTGGTGGTGTAGGCCTCC
TACTCTAGCTCTAGAAAATAGAACGTTTTTTTTTGTCGCACTCTTTGCCT
GAAAATTGAAAACACCAGGTCGAAGAGTTGTTCTAGAATCCCAAAGAGAT
CATTCTGCCGAAGACACTAGCTTGATGCTCTGAAACATCCTGCAAGAACC
CTAAGAGAGCTCATCAAGCAGGGATGTCTCCCTTTTTTGTGCAATCTGCT
GTGAAGAAGCCTAGCAAGCGATGGGGGTATCCCCTCTTGCTCTCAGCTTG
AACCCCTTAAAGACAAACATGCACAGATGCTTGCATTTCCCACGTCACAG
GTATCCTCCCACTCTTGATGTCTATGTTCCCTTATTCTCAACCCCGATGA
ACCGTTGTTTTCCTGCAGGGTGTACCCTGCACACTTGGAACAGCTCTTGC
TTGTCTGTTCCTCAGGACGTCAACAAATAGATATGTTTTTGTTAGAAATT
TGGATAACCGAAAGCTGAAGTAGACTGTTAGTTTGGCGTTTTTGACAAAC
CTGTTCCTAAAGGTATCTCAAGAACGTGAAATTAACTAGGCCACAGCATG
TACAAATGTACTTATTGCTCTTCCTGGTGCTGGTAGTATGAATGGCGGAG
TTGGGGGGACTTGAACCAGCAACCATCACATTGCCCATGGATCAGGTTTC
ATGCCAATGGTGAAAGCTATCTGTTTGTGCTCCACCATATTAGTGAACAC
CTTCTTTTGATTGTGTACAGTACCTGTGGAGACCCACCCAGACTCTCCTA
CCTCACAAGTGGGGTGAGAAATGTGCTATTTTGACAACAATTGCATGTGT
TTGCGTGCTTGCATATTTCGTGCTAGAGCCATCGAAATAAGGCATTGCAA
CTAGTGTGGTATATGCCTGGAGTCTGAACCTTTGGGGCATGCAGTAGGTT
CTCAGCGTACTGTACATAGAAGAATATATGCACTCAGGTTGGTGTGCAAA
TATGATATACTAGACCCTATTCCCCACAATGGATAGGTTTGAGTACACCC
TCAGCTCTGATTGTCTTTAATATTTTGCTTGGCGTTACATGGGATGACTT
TGTGCTGCCCAGAACCTCAATCTCAACCAAGTTCACTGAGCCTGAAGTTT
TCCCATAGGCACTTGCCACTGTAGGAACCGCCTATTGCACCCCTTGCAAG
AGCTGGCACGGCAATTTTCCATGCAGAAAGGTGACATTCTAGGCTCAATC
CTGATTCATAGCACAGGTCTAACTGCTTGTTCAGTTTTTAGGAGAAGAGC
TGACTGTTGTTTGTTCTCCCATGCTTGATTGGTCTAGGAGAAGGGTTGCC
TTACCTTTCCCTCATTTTCTGCCTTTGGTGCCATTTTGAAGGGTATGGAC
ATCACTTCAAGTGCTGCTCAGATTGATGACCAACAAGAAACGAATTTATT
TTGAAGAGTTTGTAAATCCAATATCCAGATGCTCGATCACCTTTGTGTGT
GTGAATGCTGGTTTTTGCTCTATTCGTAGTAAAAGACCACGAATAAATCA
AGACCTTTCTGATACAGAGGGAGTTTCGTTTTGGTCCCCTCCCTCCAACA
CAGTTTTTAGGGCAAAAGTAGTCTGTCTTATCTCATCTAATGATCTGTTC
AAGTTTCAATACATTCCTTCCTGACTGGGACGTTGACTGTGGAAAGACAA
GCCCACCCTAGATATAAGATATACATTCCATGGCAGACAC
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Coding sequence (CDS) from alignment at C-tenellus_contig7406:2659..5748-

>mRNA_C-tenellus_contig7406.1.5 ID=mRNA_C-tenellus_contig7406.1.5|Name=mRNA_C-tenellus_contig7406.1.5|organism=Choristocarpus tenellus KU2346|type=CDS|length=633bp|location=Sequence derived from alignment at C-tenellus_contig7406:2659..5748- (Choristocarpus tenellus KU2346)
ATGTTGGGGTGTAGGATAGGAGAAAGACCCTGGAGAGAAATGGAGCTAAG
TAGGGGAGCTGAACCTAGCACCATGGGTGGAGAAGGGAGGAGGGGAGGGT
CCTCATGGATGGTCGAATTGGTCGCTCAACGTGATGCGGCCTTAATTTTC
TCCCGGAAACTTGCGCAGCAGCTCGACAGCCAAGCGACAACTCTTGAGCG
AAGAGCCAAAACAGCCGAACAGTTGCGGGAGGAGGCCGAAAGAGTCCTAT
TTGGCTGCTCGATGCAAATACCTAACAAGCGGGTCCAGGCCCCGGATATC
AATCTTCGGATTGCTGTCCTTATCGGCAGCTCTCTCTTGGCATGGGGTCT
GTGTGCAGTTGTTGCTGTGGCTGGATGGCCCATGGCGGGCCTAACCATGG
TGAGAGCATTGTTGAGTGTCTCAAGGTCGTGCCACGATCATACCCAGTCA
TTCTATGTAGAACCAAGTGGCCTACATTTCTTTTTCAAGCAAATCTTGTC
AATGCTATGCACATCAAAGTTAATGTTTCTTCATACAGACCTGCTGATAT
CTCATACATTCCTGTGGTGGTGTAGGCCTCCTACTCTAGCTCTAGAAAAT
AGAACGTTTTTTTTTGTCGCACTCTTTGCCTGA
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