mRNA_C-tenellus_contig7400.3.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7400.3.1
Unique NamemRNA_C-tenellus_contig7400.3.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7400.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7400contigC-tenellus_contig7400:2619..3340 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size553
Hectar predicted targeting categoryother localisation
Exons2
Cds size288
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790034.7544117-UTR-C-tenellus_contig7400:2618..28101680790034.7544117-UTR-C-tenellus_contig7400:2618..2810Choristocarpus tenellus KU2346UTRC-tenellus_contig7400 2619..2810 -
1680790034.797233-UTR-C-tenellus_contig7400:3267..33401680790034.797233-UTR-C-tenellus_contig7400:3267..3340Choristocarpus tenellus KU2346UTRC-tenellus_contig7400 3268..3340 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790034.7689576-CDS-C-tenellus_contig7400:2810..29191680790034.7689576-CDS-C-tenellus_contig7400:2810..2919Choristocarpus tenellus KU2346CDSC-tenellus_contig7400 2811..2919 -
1680790034.7836635-CDS-C-tenellus_contig7400:3088..32671680790034.7836635-CDS-C-tenellus_contig7400:3088..3267Choristocarpus tenellus KU2346CDSC-tenellus_contig7400 3089..3267 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7400.3.1prot_C-tenellus_contig7400.3.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7400 2811..3267 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7400.3.1

>prot_C-tenellus_contig7400.3.1 ID=prot_C-tenellus_contig7400.3.1|Name=mRNA_C-tenellus_contig7400.3.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=96bp
MGREKAGSYTAGVWLRDVFEGIDYLLYLGGHLLKGIEKCPTIPFSVLIAA
LATICGLSQISGLCCPPYPCAIIVQFLCSRLLWYRQLLHQQSLQT*
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mRNA from alignment at C-tenellus_contig7400:2619..3340-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7400.3.1 ID=mRNA_C-tenellus_contig7400.3.1|Name=mRNA_C-tenellus_contig7400.3.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=722bp|location=Sequence derived from alignment at C-tenellus_contig7400:2619..3340- (Choristocarpus tenellus KU2346)
ACAGGTAGAAGATGGTGCCATCTTGGCCCTGTTAGCCCTGGCGGAGAGGG
CTGTGGGACAGAGGGTGAGTTCCATGGGGAGGGAGAAAGCTGGGTCATAC
ACAGCTGGGGTCTGGTTGAGGGATGTATTTGAAGGAATTGACTACCTGTT
ATATCTGGGTGGCCACCTCTTGAAGGGAATAGAAAAATGTCCGACGATAC
CATTTAGTGTCCTAATTGCTGCTCTCGCCACCATTTGTGGACTGTCCCAA
ATGTGAAGGGCATCGATATGGCAGTGCGCTTCTCCTCCCCCGACAACACT
ACTGCTGTACTAGAGCTGTTTCACTGTTTTTGGAGTGCAGGGAGGGGGAG
ACTGATGCAGCAACATTTTGCTTTTGTCGCAGTCTTACATTTGGGGTGAT
TTAAGTTCGCAATCTGTGTAGTAGTGGATTGTGTTGCCCTCCATACCCAT
GTGCCATCATTGTGCAATTTCTGTGTTCAAGATTGCTTTGGTACAGACAA
TTACTTCACCAACAGAGCCTACAAACGTAGCAGTATGATGCAGTACGGTG
AGAGAAGGACACCTCAAATTTCTGTCCACCTGTAGAAATATGTAAGAAAT
GGGTCGCTATTGATGTTTGTTACTGTCTGCTACCTTGAATAGGATGGGGA
GCCTTCCACTGACCGGCTGATGTTGTGACCGTAATAGAGCTGCTTATACT
GAAAGTGCTCACAAACAATGGC
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Coding sequence (CDS) from alignment at C-tenellus_contig7400:2619..3340-

>mRNA_C-tenellus_contig7400.3.1 ID=mRNA_C-tenellus_contig7400.3.1|Name=mRNA_C-tenellus_contig7400.3.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=288bp|location=Sequence derived from alignment at C-tenellus_contig7400:2619..3340- (Choristocarpus tenellus KU2346)
ATGGGGAGGGAGAAAGCTGGGTCATACACAGCTGGGGTCTGGTTGAGGGA
TGTATTTGAAGGAATTGACTACCTGTTATATCTGGGTGGCCACCTCTTGA
AGGGAATAGAAAAATGTCCGACGATACCATTTAGTGTCCTAATTGCTGCT
CTCGCCACCATTTGTGGACTGTCCCAAATTAGTGGATTGTGTTGCCCTCC
ATACCCATGTGCCATCATTGTGCAATTTCTGTGTTCAAGATTGCTTTGGT
ACAGACAATTACTTCACCAACAGAGCCTACAAACGTAG
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