mRNA_C-tenellus_contig7393.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7393.1.1
Unique NamemRNA_C-tenellus_contig7393.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7393.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7393contigC-tenellus_contig7393:2..6713 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G8A9
Preferred nameURB1
PFAMsNopRA1,Npa1
Model size995
Max annot lvl2759|Eukaryota
KEGG rclassRC00435
KEGG koko:K01626,ko:K07766,ko:K14861
KEGG ReactionR01826
KEGG Pathwayko00400,ko01100,ko01110,ko01130,ko01230,ko02024,map00400,map01100,map01110,map01130,map01230,map02024
KEGG ModuleM00022
Hectar predicted targeting categoryother localisation
GOsGO:0001650,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0031974,GO:0031981,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0070013
Exons3
Evalue9.61e-06
EggNOG OGsKOG1791@1|root,KOG1791@2759|Eukaryota
EC2.5.1.54,3.6.1.52
Descriptionmaturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
Cds size993
COG categoryS
BRITEko00000,ko00001,ko00002,ko01000,ko03009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790033.816021-CDS-C-tenellus_contig7393:1..1071680790033.816021-CDS-C-tenellus_contig7393:1..107Choristocarpus tenellus KU2346CDSC-tenellus_contig7393 2..107 -
1680790033.8288677-CDS-C-tenellus_contig7393:4652..54411680790033.8288677-CDS-C-tenellus_contig7393:4652..5441Choristocarpus tenellus KU2346CDSC-tenellus_contig7393 4653..5441 -
1680790033.838976-CDS-C-tenellus_contig7393:6615..67131680790033.838976-CDS-C-tenellus_contig7393:6615..6713Choristocarpus tenellus KU2346CDSC-tenellus_contig7393 6616..6713 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7393.1.1prot_C-tenellus_contig7393.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7393 2..6713 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7393.1.1

>prot_C-tenellus_contig7393.1.1 ID=prot_C-tenellus_contig7393.1.1|Name=mRNA_C-tenellus_contig7393.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=331bp
LGFLETLEAVLEACGPFAEGTQEWEAGATALRKSMELTDSSKKKKNSFTE
SGVLARAALLSWLEAGSRAADCSGVYADRSGPPLVDSLFAVLEEEYLTHC
LAGAAVVAKEVARVAKRAGVRVAMLDERDGVCQEWEGGQDEDESRVAVVL
SENRKYKLLLHEVKNHITGLRCHGLSNPNPNSNSNSNNSGGSELREQSPF
PRPIIVGVGSAGVVLDGEGESVEVWRGRKRREAAVDSFLRAVLKNRFEDH
FSLEVVRLVSMSLFAPVCLPRGTRGQLELAAVGGLEGWSAAEMLERVVGH
SRFFPVLSVPVPEEGTPLEATSNTAPCTKAD
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mRNA from alignment at C-tenellus_contig7393:2..6713-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7393.1.1 ID=mRNA_C-tenellus_contig7393.1.1|Name=mRNA_C-tenellus_contig7393.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=6712bp|location=Sequence derived from alignment at C-tenellus_contig7393:2..6713- (Choristocarpus tenellus KU2346)
CTGGGTTTCCTAGAGACGTTGGAGGCTGTGCTGGAGGCGTGCGGGCCATT
TGCAGAGGGTACACAAGAGTGGGAGGCAGGGGCTACAGCACTGAGAAAGT
GAGAGTTAATGATCTTGAATCTTGAAGTGAAGGTTTTGAGGTTGGGGGTA
TGATGGGGGGAGGAGGAGTAGTAGGAATACTGGCAGGGATTGTTGAGGTT
AGGGAATGGGAAGGAGTTGTATTGGCAAGAGGGATTTATAGGGTTAGGGA
GGAGGGGTGTATGTAGGTGGGGTAGCATTTTAGTCGGTAGTCAGTAGTCA
GCAATGTCTTGCAAGTGGTGGAGAAATGCATATTTGGTGTAGAATGTTTG
ATTACATGAGAAAAATGAGACCCACCACATTTTTATTTTTGTACTGCGTT
TACACTCCTGGTAGGTTAGGGTTAGGGTTAGTTTGAGCTGGGTTTGGTCA
TAGTGTCCTGCGTAGGAAATGTCCAAATATCCAAAGTCATGGTTTTGGGT
GGTTTTTCCTTTTTATTATCTAGGGTTAGGGTTAGGGTTAGATTGGTCAT
CGTTGGTGTTGTAAAAGCATTCAAGCAAAGGGGTCAATTTGGTGCATTTC
AACTCTGTTTTTTCTGTAACTGTAATGCTGTGTAAACACTCTTATTTTGA
TTTGTTATCTAATGAAACAACTCTCATTCTGAAGATGTTGATTGCTTCAG
GGTTTGACCACGACTGTTGTACACTTCCCTCTTTTTTTTTTAAGGCTCTG
TTTCTGAAGTTACGAAACGATCTTCAAAAGATTAGAGTTTTGCGTATCAA
GGAGAAGGCTTTTTTCCAACAATACATCAGTAGGGGTTGGAATCATTTAT
CTACTACGGTTGTTTTGTTCTTAGGGTTAGGGTTAGGAATAGTAGGGTTA
GGGTCAGGGTTAAGGTTTACAGCTATGTTGATTACTATATATAACATAGA
TGGGTATCGTGACAACTTGCATGCTCTAACTGGTTAGGGTTGAGAGGTTT
GTCATCCTGATTTAATAGTGCAGTGGCTCAGGATTAGAGTTAAGGATAAA
TAGAGTTAAGACTGATGGGGGCACCTCAGTTCTGTTTGAGATACGTTTCT
CTCACAAATATGTCTAACTCACACTTTTGTTGGGTTAGGTATTAGGGTTA
GGGTTAGGGCTATTGTTTTATGCGATGTAAGCACTGAACACTGAACACTG
ACATTGCACAAGACGCACTCACACCCCTGACAAGTTTTACCTGCACCGCC
TTCCTCTTCCTGTACAAAACAGATCGATGGAACTAACCGACTCCTCCAAA
AAGAAAAAAAATAGCTTCACTGAGTCGGGTGTGCTGGCCAGGGCCGCTCT
CCTCTCATGGCTGGAAGCTGGTTCCAGAGCTGCAGATTGCTCTGGGGTCT
ATGCTGATCGCTCTGGGCCTCCTCTGGTCGACTCTCTGTTTGCTGTTCTA
GAGGAAGAGTATCTGACCCACTGCCTTGCAGGAGCTGCAGTGGTTGCCAA
GGAAGTAGCAAGGGTAGCCAAGAGGGCTGGGGTGAGAGTGGCGATGCTTG
ATGAACGTGATGGGGTTTGCCAAGAATGGGAAGGGGGACAGGATGAAGAT
GAGTCGAGGGTGGCGGTGGTGTTGAGTGAGAATCGAAAATACAAACTTCT
GTTGCATGAGGTGAAAAATCATATCACTGGGCTCAGGTGCCATGGTCTCA
GTAACCCTAACCCTAATAGCAACAGCAACAGCAACAACAGTGGGGGCTCA
GAGTTGAGGGAGCAGTCGCCGTTCCCGCGCCCAATTATTGTGGGAGTTGG
TAGTGCTGGGGTGGTGTTGGATGGCGAGGGTGAGAGTGTGGAGGTTTGGC
GAGGTAGGAAGAGGAGAGAAGCAGCAGTTGACTCATTTCTAAGGGCTGTG
CTCAAGAATAGGTTTGAAGATCACTTCTCCCTCGAAGTGGTTCGTTTGGT
GTCAATGTCTCTCTTTGCACCTGTATGCCTTCCAAGGGGAACAAGAGGTC
AACTGGAACTTGCTGCTGTTGGTGGACTGGAAGGCTGGTCGGCGGCGGAG
ATGTTGGAGAGGTGAGAATGGTTGGTCATGTGTGTGTATTTGTGCATCTT
GCTGAGGTTAGGGATAGGGATGGGGATGGGGATGGGGATGGGGATGGGTT
AGGGATAGGGGGCATGCATGTGTTCGGAGTTGTTTCTGAGGCGGCTGATT
GACTGTAATTTGAAACTGTCACGGAAGATCAATACAAAGGCATCTCACAA
TCTCTGTTCATATCTTTTATTATTTTTATTTATATTTATATTTATATTTA
TATTTATATTTTAGCAATGTGTTTGTGATGTAACACTCTCCTATTTTGTT
CATTACAAATATATTAAAGGTGAAAGAGTACTATGGGGTCGAACCCTACG
CTGCTGGTTACCAAATGGAATCAATAGCCCCGGAGTATAGCTTTCACTTG
GGGCATTTTGACAGCTTTTGATGGCTATTTTTAGGTCCACGTGCATGTTC
TACCTTTTTTTTTCCCCACCTCCTTTTGATCTACAAAACAACAAGTCTTG
ATCACCATAGATACGCTTTTTGGGATTATAGACAGCTATTAGGGTTGAAT
AGGTTGGTCTTATTGACTCTGTGGCTTAGGGTTAGCATTGTGGTGAAGTC
AGTTTGGAACATTTGATAATAATGTGAGAGAGTATTTTGCCTTGTAACCC
TCTTGTTGTCAGCATGTCCTTGTCACAAGGTGTGTTTTTATTTTTATTTT
CTGATGGTGTTGTATATCCCGTGAACATCTCGAAGGCGTTGTCATCTGTT
TTGATCCAGTTTTTTAAAACGCCTTTTAAAATTGAGACCCCAGAAAAATG
GCCACTGAATTGTCAAGGTAAATTATATTCTGCAAACCTTTTTTTAAGTC
ATACTGCTAAAGGAGAGAGGTATATACACATTTGCATTGTAAGGTGTTCT
CAGAAATTTGAAACTAGTTGAGAGTTATCTGTTTAGACCTAACCCTAAGT
TGTGTCGACCACGTGTGTGTCTGTCGAGGAAAGTGTGTGCCATTACTCCA
CCCCCTACCTCCTTCAATTGCCGCTCACTAGTGTGTCATCAAGGGTTAGG
GGTAGGGTTAGGGGTAGGTGCTGGATGCTCTGGGATGTTCAGGAGTAACT
TGGTTGTTGCTGAAGCGAGTGTCAGTTGCCCTAACCCTAACCCTAACCCT
AAGAACAAATTGAAAACTTTTGTTAGTTTGTGGGTGATGCCAAGATAAAT
GTGGAACAAAATCGACTTGTTACACACAGTATTGTATTAGCGAAGGCGAT
GTTTTACTTCCTCTCGTTGCTGGAAGGGGCCCCAGTCAGAAGTACAGAGA
CCAGCAAAGTGAATTTAAATTTAAATTTTCAAAAAAAGCCGATTGCAATC
AGAGATCAGAACCTAGAGCTGCTTACATTACCATTAAATATATAATAATA
ATAATTTTATATAGTGTTGTGCAACTGAGGGGTCAAGTCGTTTTTTTTTT
TCTTGTGCTCACTGGCGGTTTTGATTGGCTGAATTCTATTCAGTGCGCCG
TTGTCTATTCTGATAATTTTTAAAATACCACTGACTACAATATCAGCAAT
CAATGGAGTGGTATATAGATTTCTATCTTACTGCTGACAGTATAAGTAAT
TCCACATTATACTGTTGATATTTTGTTCTCACTCCTTCCATACCATACTG
TCAACTAAGTTGAAAGCGTATTCAACACACTGCCGCCATTCACCGATCGA
TCTCACCATTCTTTGCAAATTTGAATGTTTGATTCTTGGCATTGTGAATG
AATGGAATTTACAGTTTTAAAATGATAAGAAAGCAGAAAAAATCCCATCA
ACTCGATTGAACTATTAGGGACGCATGAGGTAAAGCGTGTACAACGCACG
TATTCTGCGTGTGGCGTGTGGGGCTGTAAGAACAAAAAAATAACTACCTG
GTTTGAATAGAGCCCCTTCAGAGGCATGCATTTTGTCTGTTATCTATTTC
GTGTACTTTGCAGTATCCAGAGGCGTGTTCTCCTGTATTGTATGGAGTAT
TTGAGACAGACTGTTGGTCATTCGTATCTTGGTTTTTAGTTGGGGAAGGC
TGAAGAATATGTGTCCAAGTGGTTGACTGTGTAGGGCAATATACATACAT
GCATAGAAAACAACCAAGAGTTATGTTGTGTGCAAGTTATCAGTTAGTAG
AATTGATGATATAACAACAAATTGACCTTATTGTTACAATACCTCTACTT
ACAGACTACTACACACATTTAAAACTCCCAATCCCAGAGAAAATATTGAG
TAGCTGCTGCTGCTGCTGCTGCTGCTGTGACTGTGTTTCTCTATTCTCCT
GATGACAGCTGCTTGCTTGACTCCCTCTAGTGCATCCAATTTTCTCCAAG
GACCACAAAGCAAAAGAAGCAGCTGGGTATTATTATGTTTACTATTACTA
CTCTTGTTATCGTCATTATCTGCATCTTGCCTGATCTTGCCTGTCCCTCT
TGACAGGGGCTGTATTCACCGATCACAACAATATTAGGTCTGAGTCAGCC
TGAAAAGTAGGAATGGTCAAAACATGTCGGGCAAGCTTGGCTAAGGATGG
AAAACATGAATCCCTTTTTTGACACCATTGAAGTCGTTAAATCATTAATG
TAACTCTTGCCATCACCCCACATCAAGGCATCTCTCTGTCTGTCTGTCTT
AAAAAAAAAAAGGAGCAGACTCTATTGCAGTTAGGGTTAGGGTTAGTTTC
ATCAACAACAATTGCTCCACCTCTCCATCTCCAGTAGCTAAACTCTCAAC
ACTGTGTTCACCCACTGAGCTCTTTTGAATATCCCATTAGCCTCTTTTCC
GTCTGAGGCTGCAAGGTCTCCCTCCTCGTAGGCTGTGTGTAGCCTACAAT
GAACTGTGCTAGGTATGTCTAGCATACCCTGCATTGATTGCTCCTCCTCC
TCCACTATGCGAACCACTTCCAACTCCACACGACTCCAAGCTATCGAAGC
CTTGCTCTGCTTCTGTAATCCTTGACCTTTAGGCTGCCTATGTTGACCCT
CAGTGTATAAAATGTTAGGGTTAGGGTTAGGGTTAGGGTTATGGCGTCAG
TAAGTTGAGTAAAGAGTGATCAGGTAGTACAGTCATTCTATTCAGGGTCT
TGATAATCTTCTTGAAATGTGTGCTCTCCACCACCTGAGTCGGGATGATG
GTAGAGGTTGGGGGGTGGGGGTGGGGGGCTATGTGTTATGTTCGATACAC
TACAGAATGGTCCTATGGTGTATCAAAGTTAACACCTCATTCCCCTCAGG
TCTATTTTACTACCCTGAATCACATGAAGGGCAGCGATTCCAAGAAGATG
ATTTAGATATCACATGCTTAGAGTATACTACATATATAGCTGTGGGGGGG
GAGGGAGCATGATCGGCGCACAAGAAGTAGCTGTGATATCAACAAGATGA
AGAGAACCGAGAGACTAGATGGTTAACGGACGTCATGAAAGACGCCTTCG
CAATGTACATGAAGAGTGACCTGGGTCTACATTGCCTCAAAGCAAAACGC
AAAGGTCACCCAATCAGATGCCTTCAGTTTGAATAATTTGGCCACGCGAC
CATCTGTCCTCGACCCCGGTCCCCCCTCCCCTCCCCTCAAAGTTTCAAAA
GGCCTCACCATGCCCAGGTTTGCTGCATGTAAGGTAGTTCTTCATGTTTG
CGGCTGACCTAGATTCCCCGATTTGAATCTCCATCCTGGCAACATCGCAG
TTCTTGATTTGAATATCACATTCTTGGTTTAGATCTTACAATATCTCACA
TATGACCACAATGGAAATTAAAGTCTTGACAAAGGCTAGACAAAGGCTAG
ACTGTGGTATCTCAGGGTTAGGGTTAGGGAAAAACGCCACATAGAGATGT
CAACCAGACAGGTCTCATCTTTTGTCAGTTATGCACACATTCCACCTCTC
CTCTGCAAGTATCTGCCTTCCTCTCTCTCTCTGTGTGTGTGACCTCATCA
GACTCATATTCTTCCTCATCATCATGATCCTCAGGTGGGAGGGCATGCAT
CGGAAGATGTATCTGTTTAAACTCTTCAGACCTAAGAAAGCCTAAACGGT
CTCAGGCTGATCCTAAGTCATGAATGTGTGGTGGCTTGTGTGTTGTGTGC
TGTGAGCGTTTTTCGTGATGAATACAATATCACAGGTTGGGTGATTCTCT
GACCTCTGATGCACTTCTGCCTGTGTTGGGATAAGCTACATACATACCAA
CAATAATAATAATAATTGAGAAAAAAAATTAATTGTGATGGCGCTGATTA
TTTTCTACTACTTCAACTGAAGCCGAATCAACTGTCGCGGTTGATAGCTT
CATGATTCGAGTGATAACATTTGTGATTGTTACAGTTGTTATTGTTACAG
TTGTGATTGTCTGTTCTGCAATGTAGCAGGTCGAGTTCAACATGACCAGA
GCATGCGCTCTCTCTTCCCCTAGACCGCACGGACACCTTTTTGAGATCAT
CTCCTTCCTGTACATACACGCCCTAACCCTAGCACTGATAACACTAATAA
TCTCGTTATTGTTTTTGTAATGACTATCCTGTGCTTGACCATTGTGGTAC
CAACAGGGTGGTCGGTCACTCCAGGTTCTTCCCGGTTCTCTCTGTACCTG
TACCTGAGGAGGGAACCCCCCTTGAGGCCACGTCAAACACTGCCCCCTGT
ACGAAAGCTGAC
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Coding sequence (CDS) from alignment at C-tenellus_contig7393:2..6713-

>mRNA_C-tenellus_contig7393.1.1 ID=mRNA_C-tenellus_contig7393.1.1|Name=mRNA_C-tenellus_contig7393.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=993bp|location=Sequence derived from alignment at C-tenellus_contig7393:2..6713- (Choristocarpus tenellus KU2346)
CTGGGTTTCCTAGAGACGTTGGAGGCTGTGCTGGAGGCGTGCGGGCCATT
TGCAGAGGGTACACAAGAGTGGGAGGCAGGGGCTACAGCACTGAGAAAAT
CGATGGAACTAACCGACTCCTCCAAAAAGAAAAAAAATAGCTTCACTGAG
TCGGGTGTGCTGGCCAGGGCCGCTCTCCTCTCATGGCTGGAAGCTGGTTC
CAGAGCTGCAGATTGCTCTGGGGTCTATGCTGATCGCTCTGGGCCTCCTC
TGGTCGACTCTCTGTTTGCTGTTCTAGAGGAAGAGTATCTGACCCACTGC
CTTGCAGGAGCTGCAGTGGTTGCCAAGGAAGTAGCAAGGGTAGCCAAGAG
GGCTGGGGTGAGAGTGGCGATGCTTGATGAACGTGATGGGGTTTGCCAAG
AATGGGAAGGGGGACAGGATGAAGATGAGTCGAGGGTGGCGGTGGTGTTG
AGTGAGAATCGAAAATACAAACTTCTGTTGCATGAGGTGAAAAATCATAT
CACTGGGCTCAGGTGCCATGGTCTCAGTAACCCTAACCCTAATAGCAACA
GCAACAGCAACAACAGTGGGGGCTCAGAGTTGAGGGAGCAGTCGCCGTTC
CCGCGCCCAATTATTGTGGGAGTTGGTAGTGCTGGGGTGGTGTTGGATGG
CGAGGGTGAGAGTGTGGAGGTTTGGCGAGGTAGGAAGAGGAGAGAAGCAG
CAGTTGACTCATTTCTAAGGGCTGTGCTCAAGAATAGGTTTGAAGATCAC
TTCTCCCTCGAAGTGGTTCGTTTGGTGTCAATGTCTCTCTTTGCACCTGT
ATGCCTTCCAAGGGGAACAAGAGGTCAACTGGAACTTGCTGCTGTTGGTG
GACTGGAAGGCTGGTCGGCGGCGGAGATGTTGGAGAGGGTGGTCGGTCAC
TCCAGGTTCTTCCCGGTTCTCTCTGTACCTGTACCTGAGGAGGGAACCCC
CCTTGAGGCCACGTCAAACACTGCCCCCTGTACGAAAGCTGAC
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