mRNA_C-tenellus_contig7387.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7387.1.1
Unique NamemRNA_C-tenellus_contig7387.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig7387.1.1 vs. uniprot
Match: A0A6H5KYI4_9PHAE (DAGKc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYI4_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 3.100e-6
Identity = 44/122 (36.07%), Postives = 58/122 (47.54%), Query Frame = 1 
Query:  313 LSLGDVVGASATQKADTNGS------------THSLEVYAYCRNN*G----CLRRR--CQRH-RRSNHLKWLVRDGDTARRWSDAISLRAGASS---------PNGIPRRLLVVINPISGTG 594
            LSL DVVGA A     + G              H L+V+AY  +  G    C  R   C+++ RR+ H  WL  D DTA+ W+  I+ R   S            G  RRLLV++NP+SGTG
Sbjct:   41 LSLADVVGAKAGPAPPSGGGGARGGINRGGGIVHQLQVFAYVESGEGKETGCTGRGGPCRKNKRRAAHQTWLASDPDTAQHWATEINKRLRQSQGREEGLEGGKRGPGRRLLVLVNPVSGTG 162
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BLAST of mRNA_C-tenellus_contig7387.1.1 vs. uniprot
Match: D8LAS9_ECTSI (Sphingosine kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAS9_ECTSI)

HSP 1 Score: 56.6 bits (135), Expect = 5.490e-6
Identity = 44/124 (35.48%), Postives = 59/124 (47.58%), Query Frame = 1 
Query:  310 LLSLGDVVGASATQKADTNGS-------------THSLEVYAYCRNN*G----CLRRR--CQRH-RRSNHLKWLVRDGDTARRWSDAISLRAGASSPN---------GIPRRLLVVINPISGTG 594
            +LSL DVVGA A     + G               H L+V+AY  +  G    C  R   C+++ RR+ H  WL  D DTA+ W+  I+ R   S            G  RRLLV++NP+SGTG
Sbjct:   99 ILSLADVVGAKAGPAPASGGGQRAGGGINGRGGIVHQLQVFAYVASGEGKEMGCTGRGGPCRKNKRRATHQTWLASDPDTAQHWATEINNRLRQSQGREEDLERGNRGPGRRLLVLVNPVSGTG 222
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7387.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KYI4_9PHAE3.100e-636.07DAGKc domain-containing protein n=1 Tax=Ectocarpus... [more]
D8LAS9_ECTSI5.490e-635.48Sphingosine kinase n=1 Tax=Ectocarpus siliculosus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7387contigC-tenellus_contig7387:2733..3655 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size594
Hectar predicted targeting categoryother localisation
Exons2
Cds size375
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790033.1771288-UTR-C-tenellus_contig7387:2732..28981680790033.1771288-UTR-C-tenellus_contig7387:2732..2898Choristocarpus tenellus KU2346UTRC-tenellus_contig7387 2733..2898 -
1680790033.1877034-UTR-C-tenellus_contig7387:3227..32411680790033.1877034-UTR-C-tenellus_contig7387:3227..3241Choristocarpus tenellus KU2346UTRC-tenellus_contig7387 3228..3241 -
1680790033.2127829-UTR-C-tenellus_contig7387:3616..36551680790033.2127829-UTR-C-tenellus_contig7387:3616..3655Choristocarpus tenellus KU2346UTRC-tenellus_contig7387 3617..3655 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790033.1996372-CDS-C-tenellus_contig7387:3241..36161680790033.1996372-CDS-C-tenellus_contig7387:3241..3616Choristocarpus tenellus KU2346CDSC-tenellus_contig7387 3242..3616 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7387.1.1prot_C-tenellus_contig7387.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7387 3242..3616 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7387.1.1

>prot_C-tenellus_contig7387.1.1 ID=prot_C-tenellus_contig7387.1.1|Name=mRNA_C-tenellus_contig7387.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=125bp
MGTPSTPPNKRPNLQRTNGCLQPKSVELLRIVAIAFFLLAAKIRGMQSET
GCECLLDGSDVFQHPQDGGRRSLCLTEATLEHTDANGKICLLSLGDVVGA
SATQKADTNGSTHSLEVYAYCRNN*
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mRNA from alignment at C-tenellus_contig7387:2733..3655-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7387.1.1 ID=mRNA_C-tenellus_contig7387.1.1|Name=mRNA_C-tenellus_contig7387.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=923bp|location=Sequence derived from alignment at C-tenellus_contig7387:2733..3655- (Choristocarpus tenellus KU2346)
GGGTGCAGACCAGTGTGCGTGAGAGCCAGTTCTACACAAATGGGAACACC
ATCCACCCCACCTAACAAACGACCTAACTTACAAAGGACCAATGGTTGCT
TGCAGCCTAAGTCGGTCGAGCTGCTAAGAATCGTGGCCATAGCATTCTTC
CTCTTGGCGGCAAAGATAAGGGGGATGCAGTCAGAAACAGGTTGTGAGTG
CTTGCTTGACGGGTCGGATGTATTCCAACATCCACAAGATGGGGGGCGCC
GTTCACTATGCCTTACAGAGGCTACCCTAGAGCATACAGATGCTAATGGA
AAAATCTGTCTCCTGAGCCTTGGGGATGTAGTTGGGGCTTCGGCGACCCA
GAAAGCTGACACCAATGGATCAACACACTCGTTGGAGGTGTACGCGTACT
GTAGGAACAACTGAGGGTGTCTCAGGAGGCAAGCACCAAGGAAGGGTCTG
TAGAACCGAATATTAGAAAAATATGTTGTCAGCACACTTGCAGGAGCATC
TACCAGCTTAGGAAATCGTCATCCTTATGTAAATCAAACTTGTAACTACT
GCAACATCGTCCCTACTTCTATAATGTACCTCATATACACCCTTACTTCC
ACCAGCGTTTTTGAGTGCCTGCCTGAGCAGGGAATGCCATGCAATATTTC
GGTTTTGTATGAGACTGTTTGTATGCGATGTGCTACCAGTGAATGGCGAT
TCTTGTTACCTAACACATTCATCGCCTATACTCACCATTCCCCACATGGT
CTTGTAGGAGATGCCAGCGACATCGTCGTAGCAACCACCTCAAGTGGCTC
GTGCGTGATGGCGACACTGCTCGCCGTTGGTCTGACGCTATAAGCCTTAG
GGCAGGAGCATCTTCGCCCAATGGGATACCGAGGAGACTACTTGTGGTGA
TTAACCCTATCAGCGGAACAGGA
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Coding sequence (CDS) from alignment at C-tenellus_contig7387:2733..3655-

>mRNA_C-tenellus_contig7387.1.1 ID=mRNA_C-tenellus_contig7387.1.1|Name=mRNA_C-tenellus_contig7387.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=375bp|location=Sequence derived from alignment at C-tenellus_contig7387:2733..3655- (Choristocarpus tenellus KU2346)
ATGGGAACACCATCCACCCCACCTAACAAACGACCTAACTTACAAAGGAC
CAATGGTTGCTTGCAGCCTAAGTCGGTCGAGCTGCTAAGAATCGTGGCCA
TAGCATTCTTCCTCTTGGCGGCAAAGATAAGGGGGATGCAGTCAGAAACA
GGTTGTGAGTGCTTGCTTGACGGGTCGGATGTATTCCAACATCCACAAGA
TGGGGGGCGCCGTTCACTATGCCTTACAGAGGCTACCCTAGAGCATACAG
ATGCTAATGGAAAAATCTGTCTCCTGAGCCTTGGGGATGTAGTTGGGGCT
TCGGCGACCCAGAAAGCTGACACCAATGGATCAACACACTCGTTGGAGGT
GTACGCGTACTGTAGGAACAACTGA
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