mRNA_C-tenellus_contig736.4.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig736.4.1
Unique NamemRNA_C-tenellus_contig736.4.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig736.4.1 vs. uniprot
Match: A0A811UVA7_CERCA ((Mediterranean fruit fly) hypothetical protein n=1 Tax=Ceratitis capitata TaxID=7213 RepID=A0A811UVA7_CERCA)

HSP 1 Score: 97.1 bits (240), Expect = 5.500e-21
Identity = 50/119 (42.02%), Postives = 74/119 (62.18%), Query Frame = 1
Query:    4 TGYLILMNGAPIAWKSKVQGAVTTSSSEAEWTAMVHEMRHAIFLRGILGELGILK-GITTWYGDNRGAIQAVTTEGFNGRTRHVDIKLKCAREYDSKGFFKVKYIPTTLQLADILTKRL 357
            TGY+ L++GA I+WKS+ Q  V  SS+EAE+ ++    + A++LR +L E+G+ K    T Y DNRGA        F+ RT+H+DIK    RE  S G F +K++ T   +AD++TK L
Sbjct:  792 TGYVFLLSGAVISWKSQKQRTVALSSTEAEYVSLAESAKEAVYLRSLLNEIGLQKLADATIYVDNRGAQCLANDPVFHARTKHIDIKHHFVRECISAGLFSLKHVSTQEMIADVMTKPL 910          
BLAST of mRNA_C-tenellus_contig736.4.1 vs. uniprot
Match: W8B6G9_CERCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Ceratitis capitata TaxID=7213 RepID=W8B6G9_CERCA)

HSP 1 Score: 97.1 bits (240), Expect = 5.640e-21
Identity = 50/119 (42.02%), Postives = 74/119 (62.18%), Query Frame = 1
Query:    4 TGYLILMNGAPIAWKSKVQGAVTTSSSEAEWTAMVHEMRHAIFLRGILGELGILK-GITTWYGDNRGAIQAVTTEGFNGRTRHVDIKLKCAREYDSKGFFKVKYIPTTLQLADILTKRL 357
            TGY+ L++GA I+WKS+ Q  V  SS+EAE+ ++    + A++LR +L E+G+ K    T Y DNRGA        F+ RT+H+DIK    RE  S G F +K++ T   +AD++TK L
Sbjct: 1241 TGYVFLLSGAVISWKSQKQRTVALSSTEAEYVSLAESAKEAVYLRSLLNEIGLQKLADATIYVDNRGAQCLANDPVFHARTKHIDIKHHFVRECISAGLFSLKHVSTQEMIADVMTKPL 1359          
BLAST of mRNA_C-tenellus_contig736.4.1 vs. uniprot
Match: A0A6G0S5Y8_9STRA (Uncharacterized protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0S5Y8_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 2.880e-20
Identity = 47/114 (41.23%), Postives = 70/114 (61.40%), Query Frame = 1
Query:   13 LILMNGAPIAWKSKVQGAVTTSSSEAEWTAMVHEMRHAIFLRGILGELGI-LKGITTWYGDNRGAIQAVTTEGFNGRTRHVDIKLKCAREYDSKGFFKVKYIPTTLQLADILTK 351
            LILM G P+ +KSK Q  V  SS+EAE+ AM    +  ++LR +LGE+GI + G T  + DN+ AI      G+  R +H+D++    R++  KG  K++Y+ +  QLAD LTK
Sbjct:   68 LILMCGGPVVFKSKRQTTVALSSAEAEYMAMAMTTQEVVWLRFLLGEMGIKMNGPTAIHADNKSAISIAVNHGYTPRAKHIDLRAHFVRDHVEKGSIKLEYVASEDQLADYLTK 181          
BLAST of mRNA_C-tenellus_contig736.4.1 vs. uniprot
Match: A0A427XXX1_9TREE (Uncharacterized protein n=2 Tax=Saitozyma podzolica TaxID=1890683 RepID=A0A427XXX1_9TREE)

HSP 1 Score: 89.4 bits (220), Expect = 6.050e-20
Identity = 46/119 (38.66%), Postives = 72/119 (60.50%), Query Frame = 1
Query:    4 TGYLILMNGAPIAWKSKVQGAVTTSSSEAEWTAMVHEMRHAIFLRGILGELGIL-KGITTWYGDNRGAIQAVTTEGFNGRTRHVDIKLKCAREYDSKGFFKVKYIPTTLQLADILTKRL 357
            TG++ ++ G+ I W S+ Q  V +S+ EAE+ A+    R A++L+G+L ELG+  K  T  + DN+GAI+     G + RT+H+ I+    RE    G  ++ Y+PT  Q+ADI TK L
Sbjct:   33 TGHIFMLGGSAIVWTSRRQATVASSTVEAEYVAVSEAAREAVWLKGLLDELGVTPKEPTPLWCDNQGAIRLARNPGTHRRTKHIAIRWHLIRELIEDGVVRLGYVPTASQVADIFTKAL 151          
BLAST of mRNA_C-tenellus_contig736.4.1 vs. uniprot
Match: A0A7C9E2K1_OPUST (Uncharacterized protein (Fragment) n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C9E2K1_OPUST)

HSP 1 Score: 87.4 bits (215), Expect = 9.480e-20
Identity = 48/121 (39.67%), Postives = 74/121 (61.16%), Query Frame = 1
Query:    1 VTGYLILMNGAPIAWKSKVQGAVTTSSSEAEWTAMVHEMRHAIFLRGILGELGI--LKGITTWYGDNRGAIQAVTTEGFNGRTRHVDIKLKCAREYDSKGFFKVKYIPTTLQLADILTKRL 357
            VTGY++L+  +PI+WKSK Q  V+ SS+EAE+ AM        +L  +L ELG+   + +T  + DN+ A+Q      F+ RT+H+++     R    +G  ++ Y+PT+LQLADIL K L
Sbjct:    4 VTGYMLLLGNSPISWKSKKQSTVSKSSTEAEYHAMSQAAAKVTWLVRLLSELGVPHTRPVTLHF-DNQSALQIAKILVFHERTKHIEVDCHFTRAKVLEGLLQLTYLPTSLQLADILNKIL 123          
BLAST of mRNA_C-tenellus_contig736.4.1 vs. uniprot
Match: UPI0009007011 (uncharacterized protein LOC109136561 n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI0009007011)

HSP 1 Score: 92.0 bits (227), Expect = 1.040e-19
Identity = 48/120 (40.00%), Postives = 71/120 (59.17%), Query Frame = 1
Query:    1 VTGYLILMNGAPIAWKSKVQGAVTTSSSEAEWTAMVHEMRHAIFLRGILGELGILK-GITTWYGDNRGAIQAVTTEGFNGRTRHVDIKLKCAREYDSKGFFKVKYIPTTLQLADILTKRL 357
            +TGYL+L   +PI+WKSK QG ++ SSSEAE+ AM        ++  +L ELG+ K    T + DN+ A+       F+ RT+H+DI     R+   +G  ++ Y+PT  QLAD+ TK L
Sbjct:  188 ITGYLLLFGKSPISWKSKKQGTISKSSSEAEYRAMASAAAEVTWVVRLLEELGVTKLKPVTLFCDNQSALHIARNPVFHERTKHIDIDCHFTRDKVLEGLLQLSYLPTNSQLADVFTKSL 307          
BLAST of mRNA_C-tenellus_contig736.4.1 vs. uniprot
Match: A0A6A2X1M2_HIBSY (Uncharacterized protein n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2X1M2_HIBSY)

HSP 1 Score: 93.2 bits (230), Expect = 1.280e-19
Identity = 44/119 (36.97%), Postives = 76/119 (63.87%), Query Frame = 1
Query:    1 VTGYLILMNGAPIAWKSKVQGAVTTSSSEAEWTAMVHEMRHAIFLRGILGELGILKGITTWYGDNRGAIQAVTTEGFNGRTRHVDIKLKCAREYDSKGFFKVKYIPTTLQLADILTKRL 357
            +TG++  + G  ++WKS +Q  V  S++E E+ A++  ++ A++L+G++ ELGI + + T + DN+ AI     + F+ R++H+D+KL   R+  +KG   VK IPT    AD+LTK L
Sbjct: 1980 LTGFIFTVFGTAVSWKSNLQSVVALSTTEVEYIAVIEAIKQAMWLKGMVEELGIQQKVVTMFCDNQSAIHLTKNQVFHERSKHIDVKLHFVRDVVAKGSIIVKKIPTEENPADMLTKAL 2098          
BLAST of mRNA_C-tenellus_contig736.4.1 vs. uniprot
Match: A0A6A3KLU3_9STRA (Uncharacterized protein n=3 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3KLU3_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 1.280e-19
Identity = 47/114 (41.23%), Postives = 70/114 (61.40%), Query Frame = 1
Query:   13 LILMNGAPIAWKSKVQGAVTTSSSEAEWTAMVHEMRHAIFLRGILGELGI-LKGITTWYGDNRGAIQAVTTEGFNGRTRHVDIKLKCAREYDSKGFFKVKYIPTTLQLADILTK 351
            LILM G P+ +KSK Q  V  SS+EAE+ AM    +  ++LR +LGE+GI + G T  + DN+ AI      G+  R +H+D++    R++  KG  K++Y+ +  QLAD LTK
Sbjct:  149 LILMCGGPVVFKSKRQTTVALSSAEAEYMAMAMTTQEVVWLRFLLGEMGIKMNGPTAIHADNKSAISIAVNHGYTPRAKHIDLRAHFVRDHVEKGSIKLEYVASEDQLADYLTK 262          
BLAST of mRNA_C-tenellus_contig736.4.1 vs. uniprot
Match: UPI0015E822C0 (Ty1/Copia family ribonuclease HI n=1 Tax=Escherichia sp. R8 TaxID=2161825 RepID=UPI0015E822C0)

HSP 1 Score: 87.8 bits (216), Expect = 1.490e-19
Identity = 48/117 (41.03%), Postives = 74/117 (63.25%), Query Frame = 1
Query:    4 TGYLILMNGAPIAWKSKVQGAVTTSSSEAEWTAMVHEMRHAIFLRGILGELGI-LKGITTWYGDNRGAIQAVTTEGFNGRTRHVDIKLKCAREYDSKGFFKVKYIPTTLQLADILTK 351
            TGY+     AP++WKS +Q  V  S++EAE+ A+   ++ AI+L+G+L ELG+  KGIT +  D++ AIQ    + ++ RT+H+D++    RE   +G   VK I TT   AD+LTK
Sbjct:   24 TGYVFTFAKAPVSWKSTLQSTVALSTTEAEYMAITDAVKEAIWLQGLLKELGVEQKGITIFC-DSQSAIQLAKNQVYHARTKHIDVRYHFVREIIEEGGVTVKKIHTTENPADMLTK 139          
BLAST of mRNA_C-tenellus_contig736.4.1 vs. uniprot
Match: UPI000B8B293C (uncharacterized protein LOC110789442 n=1 Tax=Spinacia oleracea TaxID=3562 RepID=UPI000B8B293C)

HSP 1 Score: 90.9 bits (224), Expect = 1.710e-19
Identity = 48/121 (39.67%), Postives = 74/121 (61.16%), Query Frame = 1
Query:    1 VTGYLILMNGAPIAWKSKVQGAVTTSSSEAEWTAMVHEMRHAIFLRGILGELGI--LKGITTWYGDNRGAIQAVTTEGFNGRTRHVDIKLKCAREYDSKGFFKVKYIPTTLQLADILTKRL 357
            +TGY++L+ G+P++WKSK QG V+ SS+EAE+ AM        +L  +L +LG+  LK +T  + DN+ A+       F+ RT+H++I     R+   +G   + Y+PT  QLADI TK L
Sbjct:  169 ITGYILLLGGSPVSWKSKKQGTVSKSSAEAEYRAMAAAASEVTWLVSLLEDLGVHNLKPVTL-HCDNQSALHIARNPVFHERTKHIEIDCHFTRDKVLEGLLHLSYLPTQQQLADIFTKPL 288          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig736.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A811UVA7_CERCA5.500e-2142.02(Mediterranean fruit fly) hypothetical protein n=1... [more]
W8B6G9_CERCA5.640e-2142.02Retrovirus-related Pol polyprotein from transposon... [more]
A0A6G0S5Y8_9STRA2.880e-2041.23Uncharacterized protein n=1 Tax=Phytophthora fraga... [more]
A0A427XXX1_9TREE6.050e-2038.66Uncharacterized protein n=2 Tax=Saitozyma podzolic... [more]
A0A7C9E2K1_OPUST9.480e-2039.67Uncharacterized protein (Fragment) n=1 Tax=Opuntia... [more]
UPI00090070111.040e-1940.00uncharacterized protein LOC109136561 n=1 Tax=Beta ... [more]
A0A6A2X1M2_HIBSY1.280e-1936.97Uncharacterized protein n=1 Tax=Hibiscus syriacus ... [more]
A0A6A3KLU3_9STRA1.280e-1941.23Uncharacterized protein n=3 Tax=Phytophthora fraga... [more]
UPI0015E822C01.490e-1941.03Ty1/Copia family ribonuclease HI n=1 Tax=Escherich... [more]
UPI000B8B293C1.710e-1939.67uncharacterized protein LOC110789442 n=1 Tax=Spina... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig736contigC-tenellus_contig736:15016..15381 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog67593.Physo139221
PFAMsRVT_2,Retrotran_gag_2,gag_pre-integrs,rve,zf-CCHC
Model size366
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.08e-17
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,3QGIS@4776|Peronosporales
Descriptiontransposition, RNA-mediated
Cds size345
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790032.188546-CDS-C-tenellus_contig736:15015..153601680790032.188546-CDS-C-tenellus_contig736:15015..15360Choristocarpus tenellus KU2346CDSC-tenellus_contig736 15016..15360 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790032.2010467-UTR-C-tenellus_contig736:15360..153811680790032.2010467-UTR-C-tenellus_contig736:15360..15381Choristocarpus tenellus KU2346UTRC-tenellus_contig736 15361..15381 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig736.4.1prot_C-tenellus_contig736.4.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig736 15016..15360 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig736.4.1

>prot_C-tenellus_contig736.4.1 ID=prot_C-tenellus_contig736.4.1|Name=mRNA_C-tenellus_contig736.4.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=115bp
MNGAPIAWKSKVQGAVTTSSSEAEWTAMVHEMRHAIFLRGILGELGILKG
ITTWYGDNRGAIQAVTTEGFNGRTRHVDIKLKCAREYDSKGFFKVKYIPT
TLQLADILTKRLREK
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mRNA from alignment at C-tenellus_contig736:15016..15381-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig736.4.1 ID=mRNA_C-tenellus_contig736.4.1|Name=mRNA_C-tenellus_contig736.4.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=366bp|location=Sequence derived from alignment at C-tenellus_contig736:15016..15381- (Choristocarpus tenellus KU2346)
GTGACAGGGTATCTGATACTCATGAATGGAGCACCAATTGCATGGAAATC CAAGGTGCAAGGAGCTGTAACCACATCTTCATCAGAGGCAGAATGGACAG CGATGGTGCATGAAATGAGGCATGCAATATTCCTCAGAGGCATCCTGGGG GAGCTGGGCATACTCAAAGGGATCACGACTTGGTATGGAGACAATCGAGG TGCAATCCAAGCAGTAACAACTGAAGGCTTCAATGGACGAACAAGGCATG TAGATATTAAACTAAAATGTGCCAGGGAGTATGATAGCAAAGGATTTTTT AAAGTAAAGTATATTCCCACGACACTCCAACTTGCAGACATCTTGACCAA AAGACTACGCGAGAAG
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Coding sequence (CDS) from alignment at C-tenellus_contig736:15016..15381-

>mRNA_C-tenellus_contig736.4.1 ID=mRNA_C-tenellus_contig736.4.1|Name=mRNA_C-tenellus_contig736.4.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=345bp|location=Sequence derived from alignment at C-tenellus_contig736:15016..15381- (Choristocarpus tenellus KU2346)
ATGAATGGAGCACCAATTGCATGGAAATCCAAGGTGCAAGGAGCTGTAAC
CACATCTTCATCAGAGGCAGAATGGACAGCGATGGTGCATGAAATGAGGC
ATGCAATATTCCTCAGAGGCATCCTGGGGGAGCTGGGCATACTCAAAGGG
ATCACGACTTGGTATGGAGACAATCGAGGTGCAATCCAAGCAGTAACAAC
TGAAGGCTTCAATGGACGAACAAGGCATGTAGATATTAAACTAAAATGTG
CCAGGGAGTATGATAGCAAAGGATTTTTTAAAGTAAAGTATATTCCCACG
ACACTCCAACTTGCAGACATCTTGACCAAAAGACTACGCGAGAAG
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