mRNA_C-tenellus_contig7357.1.2 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7357.1.2
Unique NamemRNA_C-tenellus_contig7357.1.2
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig7357.1.2 vs. uniprot
Match: A0A6H5KPY0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPY0_9PHAE)

HSP 1 Score: 187 bits (476), Expect = 1.310e-55
Identity = 104/180 (57.78%), Postives = 118/180 (65.56%), Query Frame = 2
Query:  236 LFHEVKCWQECVVPNFVTSNCFIAQAYAKSIAGFLRDHLGRQWSGRDA-GQQPVYIVEIGAGSAKLSYVLLKKLLALAKYLPKARDTRARTGPTHSGARTSPSDPGEDQDDHPAEVGEADMPPAASSRGGGQGSSELCFKYIITDFSHANFGFWINHPKFQELFSLGVIDFAVFDAEAAP 772
            +  EVKCWQECVVPNFVTSNCFIAQAYA +IA FLRDHLGR+  G  A G+QP    E GAGSAKLSYVLL+KLL L++YLP+ R   A  G                     A   + D   A   RG        CFKY+ITDFSHANFGFW+NHP+ QELF+LGV+DFAVFDAEA P
Sbjct:    1 MHREVKCWQECVVPNFVTSNCFIAQAYASAIASFLRDHLGRREKGWVAVGEQP----EAGAGSAKLSYVLLQKLLKLSEYLPRPRGNAASDG---------------------AASADGDNNTATGGRG-------FCFKYVITDFSHANFGFWMNHPRLQELFTLGVVDFAVFDAEARP 148          
BLAST of mRNA_C-tenellus_contig7357.1.2 vs. uniprot
Match: D8LQH4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQH4_ECTSI)

HSP 1 Score: 113 bits (282), Expect = 8.520e-25
Identity = 63/121 (52.07%), Postives = 75/121 (61.98%), Query Frame = 2
Query:  410 GAGSAKLSYVLLKKLLALAKYLPKARDTRARTGPTHSGARTSPSDPGEDQDDHPAEVGEADMPPAASSRGGGQGSSELCFKYIITDFSHANFGFWINHPKFQELFSLGVIDFAVFDAEAAP 772
            GAGSAKLSYVLL+KLL L++YLP+ R   A                    DD  +  G+ +   A   RG        CFKY+ITDFSHANFGFW+NHP+ QELF+LGV+DFAVFDAEA P
Sbjct:   20 GAGSAKLSYVLLQKLLKLSEYLPQPRGNAA-------------------SDDAASADGDNNTATATGGRG-------FCFKYVITDFSHANFGFWMNHPRLQELFTLGVVDFAVFDAEARP 114          
BLAST of mRNA_C-tenellus_contig7357.1.2 vs. uniprot
Match: A0A7S1CK01_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CK01_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 9.960e-20
Identity = 62/179 (34.64%), Postives = 86/179 (48.04%), Query Frame = 2
Query:  233 SLFHEVK--CWQECVVPNFVTSNCFIAQAYAKSIAGFLRDHLGRQWSGRDAGQQPVYIVEIGAGSAKLSYVLLKKLLALAKYLPKARDTRARTGPTHSGARTSPSDPGEDQDDHPAEVGEADMPPAASSRGGGQGSSELCFKYIITDFSHANFGFWINHPKFQELFSLGVIDFAVFDAE 763
            S + EV    W E +VPNFVT+N F+A AYAKSI G +RD      +  D  + P+YIVE+GAG  KL +++ ++LL + ++ P                                                G G  E  FKY++TDF+  N  FW+ H  F ELF +GV+D AV+DAE
Sbjct:  203 SFYDEVAIGAWSEAIVPNFVTTNAFLASAYAKSIMGLIRDLFDSPSAPGDRAK-PLYIVEVGAGHGKLGFLICRELLRMREFFP-----------------------------------------------AGHGL-EFPFKYVMTDFTAHNVEFWMQHASFAELFEMGVLDCAVWDAE 332          
BLAST of mRNA_C-tenellus_contig7357.1.2 vs. uniprot
Match: A0A7S1CMV9_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CMV9_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 1.300e-19
Identity = 62/179 (34.64%), Postives = 86/179 (48.04%), Query Frame = 2
Query:  233 SLFHEVK--CWQECVVPNFVTSNCFIAQAYAKSIAGFLRDHLGRQWSGRDAGQQPVYIVEIGAGSAKLSYVLLKKLLALAKYLPKARDTRARTGPTHSGARTSPSDPGEDQDDHPAEVGEADMPPAASSRGGGQGSSELCFKYIITDFSHANFGFWINHPKFQELFSLGVIDFAVFDAE 763
            S + EV    W E +VPNFVT+N F+A AYAKSI G +RD      +  D  + P+YIVE+GAG  KL +++ ++LL + ++ P                                                G G  E  FKY++TDF+  N  FW+ H  F ELF +GV+D AV+DAE
Sbjct:  203 SFYDEVAIGAWSEAIVPNFVTTNAFLASAYAKSIMGLIRDLFDSPSAPGDRAK-PLYIVEVGAGHGKLGFLICRELLRMREFFP-----------------------------------------------AGHGL-EFPFKYVMTDFTAHNVEFWMQHASFAELFEMGVLDCAVWDAE 332          
BLAST of mRNA_C-tenellus_contig7357.1.2 vs. uniprot
Match: A0A7S3LQS3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3LQS3_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 8.640e-13
Identity = 33/82 (40.24%), Postives = 51/82 (62.20%), Query Frame = 2
Query:  242 HEVKCWQECVVPNFVTSNCFIAQAYAKSIAGFLRD---HLGRQWSGRDAGQQPVYIVEIGAGSAKLSYVLLKKLLALAKYLP 478
            + + CW++ V+PNFVTSNCF+A  Y + I  F+RD   H+           Q V ++EIGAGS K ++  +++LL L+ +LP
Sbjct:   47 YNIDCWRKSVIPNFVTSNCFVANGYTRVILDFIRDYRKHMSLLHQNEKYEMQKVVVLEIGAGSGKFAFNCIERLLQLSSFLP 128          
BLAST of mRNA_C-tenellus_contig7357.1.2 vs. uniprot
Match: D7FJM6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJM6_ECTSI)

HSP 1 Score: 78.6 bits (192), Expect = 8.980e-13
Identity = 39/79 (49.37%), Postives = 55/79 (69.62%), Query Frame = 2
Query:  242 HEVKCWQECVVPNFVTSNCFIAQAYAKSIAGFLRDHLGRQWSGRDAGQQPVYIVEIGAGSAKLSYVLLKKLLALAKYLP 478
            H V+CW++ VVP FVTSN FIA AYA+ + GF+RD     +SGR    +P+ I+EIGAG  K S ++L+ LL + ++LP
Sbjct:   81 HHVQCWEKMVVPCFVTSNSFIANAYARILVGFMRDWF--LFSGRADQSEPLLILEIGAGHGKFSCLVLQHLLEMREFLP 157          
BLAST of mRNA_C-tenellus_contig7357.1.2 vs. uniprot
Match: A0A835YJE5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJE5_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 1.200e-11
Identity = 38/91 (41.76%), Postives = 60/91 (65.93%), Query Frame = 2
Query:  248 VKCWQECVVPNFVTSNCFIAQAYAKSIAGFLRDHLGRQWSGRD-AGQQPVYIVEIGAGSAKLSYVLLKKLLALA--KYLPKARDTRARTGP 511
            ++CW+  VVP+FVTSN FIAQ  A+ IAG++RD L  +      A  +PVYI+E+GAG  K S+++L+ L+ +A  K++P+ +   +   P
Sbjct:   74 MQCWESMVVPSFVTSNAFIAQQTARVIAGYIRDCLVEKADQNGVAADEPVYIIEVGAGHGKFSFLVLQALMEMAEAKFIPELKQPSSTPAP 164          
BLAST of mRNA_C-tenellus_contig7357.1.2 vs. uniprot
Match: D8MAC6_BLAHO (Uncharacterized protein n=1 Tax=Blastocystis hominis TaxID=12968 RepID=D8MAC6_BLAHO)

HSP 1 Score: 73.2 bits (178), Expect = 4.910e-11
Identity = 33/75 (44.00%), Postives = 50/75 (66.67%), Query Frame = 2
Query:  254 CWQECVVPNFVTSNCFIAQAYAKSIAGFLRDHLGRQWSGRDAGQQPVYIVEIGAGSAKLSYVLLKKLLALAKYLP 478
            CW E +VP F+TSN +IA  YA  I G++ D+  R  + +D   +P+YIVE+GAG  KL +++L  L  LA+++P
Sbjct:   34 CWTEAIVPQFITSNSYIAYQYANCILGYINDYYSRPDAKKD---KPIYIVEVGAGHGKLGFLILNHLEELAEFMP 105          
BLAST of mRNA_C-tenellus_contig7357.1.2 vs. uniprot
Match: A0A196S9E3_BLAHN (Type II protein arginine methyltransferase n=1 Tax=Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII) TaxID=478820 RepID=A0A196S9E3_BLAHN)

HSP 1 Score: 72.8 bits (177), Expect = 6.450e-11
Identity = 32/76 (42.11%), Postives = 51/76 (67.11%), Query Frame = 2
Query:  251 KCWQECVVPNFVTSNCFIAQAYAKSIAGFLRDHLGRQWSGRDAGQQPVYIVEIGAGSAKLSYVLLKKLLALAKYLP 478
             CW + +VP+FVTSN +IA  YA  I G++RD+     + +D   +P+YIVE+GAG  KL +++L  L  L++++P
Sbjct:   33 SCWTDFIVPHFVTSNSYIAYQYANCILGYIRDYYSSPDANKD---EPIYIVEVGAGHGKLGFLILNHLAELSEFMP 105          
BLAST of mRNA_C-tenellus_contig7357.1.2 vs. uniprot
Match: UPI00071186DF (hypothetical protein n=1 Tax=Blastocystis sp. subtype 4 TaxID=944170 RepID=UPI00071186DF)

HSP 1 Score: 71.2 bits (173), Expect = 2.160e-10
Identity = 32/76 (42.11%), Postives = 49/76 (64.47%), Query Frame = 2
Query:  251 KCWQECVVPNFVTSNCFIAQAYAKSIAGFLRDHLGRQWSGRDAGQQPVYIVEIGAGSAKLSYVLLKKLLALAKYLP 478
             CW + +VP+FVTSN +IA  YA  I G++RD+     S     ++P+YIVE+GAG  KL +++L  L  L +++P
Sbjct:   33 SCWTDAIVPHFVTSNSYIAYQYANCILGYIRDYYN---SPNANNEEPIYIVEVGAGHGKLGFLILNHLADLKEFMP 105          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7357.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KPY0_9PHAE1.310e-5557.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LQH4_ECTSI8.520e-2552.07Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S1CK01_9STRA9.960e-2034.64Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A7S1CMV9_9STRA1.300e-1934.64Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A7S3LQS3_9STRA8.640e-1340.24Hypothetical protein (Fragment) n=1 Tax=Aplanochyt... [more]
D7FJM6_ECTSI8.980e-1349.37Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YJE5_9STRA1.200e-1141.76Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D8MAC6_BLAHO4.910e-1144.00Uncharacterized protein n=1 Tax=Blastocystis homin... [more]
A0A196S9E3_BLAHN6.450e-1142.11Type II protein arginine methyltransferase n=1 Tax... [more]
UPI00071186DF2.160e-1042.11hypothetical protein n=1 Tax=Blastocystis sp. subt... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7357contigC-tenellus_contig7357:3223..4868 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LQH4
PFAMsGFO_IDH_MocA,TPR_2,TPR_8
Model size805
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons4
Evalue1.23e-25
EggNOG OGs28JR9@1|root,2QS4P@2759|Eukaryota
Ec32 ortholog descriptionTetratricopeptide TPR1
Ec32 orthologEc-10_005650.1
Cds size789
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790031.8170466-UTR-C-tenellus_contig7357:3222..32381680790031.8170466-UTR-C-tenellus_contig7357:3222..3238Choristocarpus tenellus KU2346UTRC-tenellus_contig7357 3223..3238 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790031.8312008-CDS-C-tenellus_contig7357:3238..34691680790031.8312008-CDS-C-tenellus_contig7357:3238..3469Choristocarpus tenellus KU2346CDSC-tenellus_contig7357 3239..3469 +
1680790031.8420272-CDS-C-tenellus_contig7357:3689..37991680790031.8420272-CDS-C-tenellus_contig7357:3689..3799Choristocarpus tenellus KU2346CDSC-tenellus_contig7357 3690..3799 +
1680790031.8511677-CDS-C-tenellus_contig7357:4014..40671680790031.8511677-CDS-C-tenellus_contig7357:4014..4067Choristocarpus tenellus KU2346CDSC-tenellus_contig7357 4015..4067 +
1680790031.860728-CDS-C-tenellus_contig7357:4473..48681680790031.860728-CDS-C-tenellus_contig7357:4473..4868Choristocarpus tenellus KU2346CDSC-tenellus_contig7357 4474..4868 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7357.1.2prot_C-tenellus_contig7357.1.2Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7357 3239..4868 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7357.1.2

>prot_C-tenellus_contig7357.1.2 ID=prot_C-tenellus_contig7357.1.2|Name=mRNA_C-tenellus_contig7357.1.2|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=263bp
MAVLGYRVVSSSTSAPVDNTFQIRLVRNTVGYVCAIVCNLPVRQRDVSAT
IWSPRFLHWNLVSFAGCTMSISSLFHEVKCWQECVVPNFVTSNCFIAQAY
AKSIAGFLRDHLGRQWSGRDAGQQPVYIVEIGAGSAKLSYVLLKKLLALA
KYLPKARDTRARTGPTHSGARTSPSDPGEDQDDHPAEVGEADMPPAASSR
GGGQGSSELCFKYIITDFSHANFGFWINHPKFQELFSLGVIDFAVFDAEA
APEDASVDSPLEG
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mRNA from alignment at C-tenellus_contig7357:3223..4868+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7357.1.2 ID=mRNA_C-tenellus_contig7357.1.2|Name=mRNA_C-tenellus_contig7357.1.2|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1646bp|location=Sequence derived from alignment at C-tenellus_contig7357:3223..4868+ (Choristocarpus tenellus KU2346)
GGTAAGGAGCTGTGACATGGCTGTACTAGGATATAGAGTAGTTTCCTCAT CAACCTCTGCACCTGTTGACAATACCTTCCAGATTCGTCTAGTCCGCAAC ACGGTTGGTTACGTCTGTGCAATAGTATGTAATCTTCCAGTCCGGCAGCG AGATGTATCTGCGACTATCTGGTCACCACGTTTTCTCCATTGGAATCTTG TTTCTTTCGCAGGATGTACAATGTCCATATCATCATTGTTTCACGAGGTA TACCTTGTAATCCTCATCTCCATACTCCCAGAATTTATTAGTGGTTCTAG CCATTCTGAAGCGGCGATCCCACTTCAAAGTTAAAGGGTCACTGTTATGT TGACACGCCCTGCCTAGCAGAAGTCCAGTGGAGTGGAGTTATTGTAACCA GTAGACCTTGTTCATGAAAGTTCTCATTCTTCCAACCGATTTCTAACACG AATATGCTGTCTCACAGGTCAAGTGTTGGCAAGAATGCGTGGTTCCCAAC TTCGTGACATCCAATTGCTTCATCGCACAGGCATATGCAAAGTCTATTGC TGGCTTTTTGAGGGACCACCTGGGGAGGTGAGTGGGTCATCGGTGGAACA GATAGTCGACAATGAGAGGGGGGGTTGTTTATCCTTGACTGTGAAGTCAC TGCTGATTTTCCCTTCTCATCCTCATTATTTTATGCCACATGTTCCCCTC CAGCCAACCTATCATATATACAGGTCTCCCATACTGACTGTGAATACTTA ATCTCCCCTATTCCTCTCTGGACTAAATACTATGCAATGCAGGCAATGGT CTGGTCGGGATGCAGGCCAGCAACCAGTGTACATAGTGGAAATTGGTGAG CCTTTTGAAAGTGGACGGTGTGGAGGTTGGCCCTCAGAGCCCTTCTTCTC ACCAAGAAGAATAATTTAGTCGCCAAACGGTGTAATGAAGAGTTGGTTGT GGGGGGGCTTAGCCTGTGTGAACGGAGTTTTGCTGTGAGTGTGACTCACA CATTTATAATTAAGCAATTAAAGAGGCGATATCAATCATCTCAAATAGTA TGGGCAGTCTACATCATACGAGAAAAAAATGCGTCCGTATTTGTCTGGTG TTTATACCTCTGTTGATTTGTATTGACATTTATTGCTATTTTATGCTTTT TTCAATCAGTCTAAAAACGTCACTGTTTATTTGTTGTACTAAGTTTTTCT CAATCTTAACGAATCGAAGTACTAAGAAGTTTTGACCCTGTGGTGACCCA GGGGCTGGGTCGGCAAAGCTCAGCTATGTCCTGCTCAAGAAGCTTTTGGC CCTGGCCAAGTACCTCCCCAAAGCAAGAGACACTAGAGCTAGGACTGGTC CCACTCACAGCGGTGCAAGGACCTCTCCCAGTGATCCTGGAGAGGATCAA GATGACCATCCTGCAGAGGTTGGGGAAGCAGATATGCCCCCAGCTGCAAG CAGTAGAGGAGGGGGACAGGGAAGCAGCGAGCTCTGCTTCAAGTACATAA TTACAGATTTCTCACATGCCAATTTCGGGTTTTGGATCAACCACCCAAAG TTCCAGGAGCTATTCTCGCTGGGGGTGATCGATTTTGCAGTGTTTGATGC TGAAGCAGCTCCTGAGGATGCTAGTGTGGACAGTCCGCTGGAGGGG
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Coding sequence (CDS) from alignment at C-tenellus_contig7357:3223..4868+

>mRNA_C-tenellus_contig7357.1.2 ID=mRNA_C-tenellus_contig7357.1.2|Name=mRNA_C-tenellus_contig7357.1.2|organism=Choristocarpus tenellus KU2346|type=CDS|length=789bp|location=Sequence derived from alignment at C-tenellus_contig7357:3223..4868+ (Choristocarpus tenellus KU2346)
ATGGCTGTACTAGGATATAGAGTAGTTTCCTCATCAACCTCTGCACCTGT
TGACAATACCTTCCAGATTCGTCTAGTCCGCAACACGGTTGGTTACGTCT
GTGCAATAGTATGTAATCTTCCAGTCCGGCAGCGAGATGTATCTGCGACT
ATCTGGTCACCACGTTTTCTCCATTGGAATCTTGTTTCTTTCGCAGGATG
TACAATGTCCATATCATCATTGTTTCACGAGGTCAAGTGTTGGCAAGAAT
GCGTGGTTCCCAACTTCGTGACATCCAATTGCTTCATCGCACAGGCATAT
GCAAAGTCTATTGCTGGCTTTTTGAGGGACCACCTGGGGAGGCAATGGTC
TGGTCGGGATGCAGGCCAGCAACCAGTGTACATAGTGGAAATTGGGGCTG
GGTCGGCAAAGCTCAGCTATGTCCTGCTCAAGAAGCTTTTGGCCCTGGCC
AAGTACCTCCCCAAAGCAAGAGACACTAGAGCTAGGACTGGTCCCACTCA
CAGCGGTGCAAGGACCTCTCCCAGTGATCCTGGAGAGGATCAAGATGACC
ATCCTGCAGAGGTTGGGGAAGCAGATATGCCCCCAGCTGCAAGCAGTAGA
GGAGGGGGACAGGGAAGCAGCGAGCTCTGCTTCAAGTACATAATTACAGA
TTTCTCACATGCCAATTTCGGGTTTTGGATCAACCACCCAAAGTTCCAGG
AGCTATTCTCGCTGGGGGTGATCGATTTTGCAGTGTTTGATGCTGAAGCA
GCTCCTGAGGATGCTAGTGTGGACAGTCCGCTGGAGGGG
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