mRNA_C-tenellus_contig7344.3.1 (mRNA) Choristocarpus tenellus KU2346
Overview
Homology
BLAST of mRNA_C-tenellus_contig7344.3.1 vs. uniprot
Match: A0A836C8I8_9STRA (ClpS domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8I8_9STRA) HSP 1 Score: 123 bits (308), Expect = 2.050e-31 Identity = 62/109 (56.88%), Postives = 78/109 (71.56%), Query Frame = 3 Query: 351 IAKPKVEKKVEXXXXXXVKPK------TEDAPMFKVHLLGDEEYERDHVLLALQDIIPEMDNTKAAAVFDEAQRGGRGHCGTFPEEQSELYVEQFIRCEPMIFAAMEEE 659 +A+PK E + KPK +ED PM+KV LLGDE YER+HV++A+QDIIPE DN K+ +F+EAQ+ G G CG FPEE +ELYV+QF RCEPMI+A MEEE Sbjct: 42 LAQPKEEAQKAATDGAKAKPKQRRVTESEDCPMYKVLLLGDEGYEREHVIMAIQDIIPETDNKKSTEIFEEAQKTGTGMCGVFPEEHAELYVQQFTRCEPMIYADMEEE 150
BLAST of mRNA_C-tenellus_contig7344.3.1 vs. uniprot
Match: D8LIM3_ECTSI (ClpS domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LIM3_ECTSI) HSP 1 Score: 125 bits (313), Expect = 2.090e-31 Identity = 53/81 (65.43%), Postives = 73/81 (90.12%), Query Frame = 3 Query: 417 EDAPMFKVHLLGDEEYERDHVLLALQDIIPEMDNTKAAAVFDEAQRGGRGHCGTFPEEQSELYVEQFIRCEPMIFAAMEEE 659 EDAPMF+V ++GDEEY R+HV++++QDI+P+ DNT+AA +F+EAQ GG+G CGT+PEE++ELYVEQF RCEP+I+A ME+E Sbjct: 120 EDAPMFQVLVIGDEEYNREHVVMSIQDIVPDTDNTRAAEIFEEAQEGGKGFCGTYPEEEAELYVEQFTRCEPIIYADMEKE 200
BLAST of mRNA_C-tenellus_contig7344.3.1 vs. uniprot
Match: A0A7S2PG26_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PG26_9STRA) HSP 1 Score: 90.9 bits (224), Expect = 1.340e-18 Identity = 41/83 (49.40%), Postives = 62/83 (74.70%), Query Frame = 3 Query: 411 KTEDAPMFKVHLLGDEEYERDHVLLALQDIIPEMDNTKAAAVFDEAQRGGRGHCGTFPEEQSELYVEQFIRCEPMIFAAMEEE 659 KTEDAP++KV L+GDEEY++ H + + DI+ ++D +AA+VF +AQ GG+ +P E +ELYVEQ +R +PMIF+ ++EE Sbjct: 102 KTEDAPLYKVMLIGDEEYDQTHTIERICDIMEDVDEGQAASVFTQAQNGGKAMIAKYPFEHAELYVEQLLRSDPMIFSELQEE 184
BLAST of mRNA_C-tenellus_contig7344.3.1 vs. uniprot
Match: A0A7R9Z7A9_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9Z7A9_9STRA) HSP 1 Score: 86.7 bits (213), Expect = 1.100e-17 Identity = 38/83 (45.78%), Postives = 60/83 (72.29%), Query Frame = 3 Query: 411 KTEDAPMFKVHLLGDEEYERDHVLLALQDIIPEMDNTKAAAVFDEAQRGGRGHCGTFPEEQSELYVEQFIRCEPMIFAAMEEE 659 K EDAP++K+ LLGDEEY++ HV+ + ++ +MD +A+ +FD+AQ G+ CG +P E +E+Y EQ R +PMI++ +EEE Sbjct: 41 KFEDAPLYKLMLLGDEEYDQAHVIERMCALLEDMDEDQASTIFDQAQISGKAMCGKYPYEHAEMYKEQLARSDPMIYSDLEEE 123
BLAST of mRNA_C-tenellus_contig7344.3.1 vs. uniprot
Match: A0A7S2VFC1_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2VFC1_9STRA) HSP 1 Score: 84.7 bits (208), Expect = 3.090e-17 Identity = 38/81 (46.91%), Postives = 58/81 (71.60%), Query Frame = 3 Query: 417 EDAPMFKVHLLGDEEYERDHVLLALQDIIPEMDNTKAAAVFDEAQRGGRGHCGTFPEEQSELYVEQFIRCEPMIFAAMEEE 659 +DAPM+K+ LL D+ Y+ +HV+ + I+ +MD +AA VF +A + G+ CG FP E++EL+ EQ +R +PMIFA +EEE Sbjct: 21 QDAPMYKLMLLSDDGYDGEHVVTRMCAIVDDMDEDQAATVFQQAMQNGKAMCGKFPFERAELFKEQLVRSDPMIFADLEEE 101
BLAST of mRNA_C-tenellus_contig7344.3.1 vs. uniprot
Match: A0A7R9WV01_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WV01_9STRA) HSP 1 Score: 80.5 bits (197), Expect = 7.330e-15 Identity = 43/106 (40.57%), Postives = 68/106 (64.15%), Query Frame = 3 Query: 351 IAKPKVEKKVEXXXXXXV---KPKTEDAPMFKVHLLGDEEYERDHVLLALQDIIPEMDNTKAAAVFDEAQRGGRGHCGTFPEEQSELYVEQFIRCEPMIFAAMEEE 659 +AK K+++K + + K + EDAPMFK+ LLGD+ Y+ HV+ L I+ ++D +AA V +A G+ CG +P E++EL+ EQ +R +PMIF+ +EEE Sbjct: 68 VAKEKIKQKQKAKTHDPISRRKDEFEDAPMFKLMLLGDDGYDAMHVVDRLCAIVDDIDEGQAAEVLQQANMAGKAMCGKYPFERAELFKEQLLRSDPMIFSDLEEE 173
BLAST of mRNA_C-tenellus_contig7344.3.1 vs. uniprot
Match: A0A1Z5J9C8_FISSO (ClpS domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5J9C8_FISSO) HSP 1 Score: 80.1 bits (196), Expect = 8.130e-15 Identity = 37/81 (45.68%), Postives = 57/81 (70.37%), Query Frame = 3 Query: 417 EDAPMFKVHLLGDEEYERDHVLLALQDIIPEMDNTKAAAVFDEAQRGGRGHCGTFPEEQSELYVEQFIRCEPMIFAAMEEE 659 +DAPM+KV LL DE+Y+++HV+ L I+ +MD +AA V+ +A G+ CG +P E++EL+ EQ +R +PMIF + EE Sbjct: 83 QDAPMYKVMLLRDEDYDQEHVVTRLCAILDDMDEDQAATVWKQAMAAGQAMCGKYPFERAELFKEQLLRSDPMIFCDLVEE 163
BLAST of mRNA_C-tenellus_contig7344.3.1 vs. uniprot
Match: A0A7S0AH38_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AH38_9STRA) HSP 1 Score: 77.4 bits (189), Expect = 1.040e-13 Identity = 35/81 (43.21%), Postives = 56/81 (69.14%), Query Frame = 3 Query: 417 EDAPMFKVHLLGDEEYERDHVLLALQDIIPEMDNTKAAAVFDEAQRGGRGHCGTFPEEQSELYVEQFIRCEPMIFAAMEEE 659 EDAPM+++ LLGDEEY+ HV+ + I+ +MD A+ + ++AQ G+ CG +P E +E+Y EQ R +P+I++ +EEE Sbjct: 92 EDAPMYRLMLLGDEEYDIVHVVERMCAILDDMDEDAASTILNQAQIAGKAMCGKYPFEHAEMYKEQLARSDPIIYSDLEEE 172
BLAST of mRNA_C-tenellus_contig7344.3.1 vs. uniprot
Match: A0A7S1Y2N3_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1Y2N3_9STRA) HSP 1 Score: 77.0 bits (188), Expect = 1.210e-13 Identity = 58/182 (31.87%), Postives = 90/182 (49.45%), Query Frame = 3 Query: 135 LIVLVMAAVLTGTSAFLAQPPLGG-------HLRSALPPSQICMPIGRSAGQGSRARTWTCMAAPAKVATTTKTKTAPVIAKPKVEKKVEXXXXXXVKPKTEDAPMFKVHLLGDEEYERDHVLLALQDIIPEMDNTKAAAVFDEAQRGGRGHCGTFPEEQSELYVEQFIRCEPMIFAAMEEE 659 + VL++ + T T F+ +PP G H R+++ P + AG S T +T K V A VEKK E K ED M+KV L+GDEEY+ HV+ + +I+ ++D +A + AQ GG+ G +P E +E+Y EQ +R +P+I++ +EEE Sbjct: 4 IAVLLVLFIATSTCGFVVRPPTGSSSVITTSHQRTSIQPLFM-------AGPASATETKXXXXXXXXXKSTVK-----VAAGEPVEKKRE---------KFEDPRMWKVLLIGDEEYDDGHVVERITEIMEDIDENRAVQILKAAQAGGKAMIGVYPLEVAEVYKEQLLRSDPLIYSDLEEE 164
BLAST of mRNA_C-tenellus_contig7344.3.1 vs. uniprot
Match: A0A1E7F5M5_9STRA (ClpS domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F5M5_9STRA) HSP 1 Score: 75.5 bits (184), Expect = 4.590e-13 Identity = 34/80 (42.50%), Postives = 54/80 (67.50%), Query Frame = 3 Query: 420 DAPMFKVHLLGDEEYERDHVLLALQDIIPEMDNTKAAAVFDEAQRGGRGHCGTFPEEQSELYVEQFIRCEPMIFAAMEEE 659 +APM+K+ LLGDE Y+ HV+ + I+ +MD +A V +A+ G CG +P E++EL+ EQ IR +PMI++ ++EE Sbjct: 88 EAPMYKLMLLGDESYDAVHVMERMCAIVDDMDEDQATTVIQQAKSSGEAMCGKYPFEKAELFKEQLIRSDPMIYSEIKEE 167 The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7344.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-tenellus_contig7344.3.1 >prot_C-tenellus_contig7344.3.1 ID=prot_C-tenellus_contig7344.3.1|Name=mRNA_C-tenellus_contig7344.3.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=194bp MISPRDLIVLVMAAVLTGTSAFLAQPPLGGHLRSALPPSQICMPIGRSAGback to top mRNA from alignment at C-tenellus_contig7344:2573..5362- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-tenellus_contig7344.3.1 ID=mRNA_C-tenellus_contig7344.3.1|Name=mRNA_C-tenellus_contig7344.3.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2790bp|location=Sequence derived from alignment at C-tenellus_contig7344:2573..5362- (Choristocarpus tenellus KU2346)back to top Coding sequence (CDS) from alignment at C-tenellus_contig7344:2573..5362- >mRNA_C-tenellus_contig7344.3.1 ID=mRNA_C-tenellus_contig7344.3.1|Name=mRNA_C-tenellus_contig7344.3.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=582bp|location=Sequence derived from alignment at C-tenellus_contig7344:2573..5362- (Choristocarpus tenellus KU2346)back to top |