mRNA_C-tenellus_contig734.3.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig734.3.1
Unique NamemRNA_C-tenellus_contig734.3.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig734.3.1 vs. uniprot
Match: A0A835YUT1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUT1_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 8.190e-13
Identity = 64/206 (31.07%), Postives = 76/206 (36.89%), Query Frame = 1 
Query:    1 FRTPWRQAPQNAGHHHNIAPLLLAQGDVKGAIHHYRRAIELNPHCNSSKNDLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKIAVRRGPS--VQGVYQREDTSVFRLLAVQLMACGGPERPHSHAFMDSYRALSGKAVTLANSVRTEEIL 612
            FR   RQAP NA +H N+APLL+++G +  AIHHYRRAIELNP   SSKND+                                                                                     +IAV RGP   V       D  V R LAVQL      +   +HA MD+ RAL GK V L NS  T EI+
Sbjct:   26 FRHKLRQAPDNASYHRNLAPLLVSEGQLTKAIHHYRRAIELNPADCSSKNDIGVCLWQLGKWEAALAAFVQVTRERPDFTAAHVNMSAVYFGRGMLVQALQHARQAVHLAPMDARAHRNLAKVLDATGDSTCAMAHRQIAVLRGPGSRVPPKPVAADIQVHRALAVQLHYHQQGDVEGAHACMDAARALEGKHVVLPNSETTWEIV 231
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig734.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YUT1_9STRA8.190e-1331.07Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig734contigC-tenellus_contig734:1058..1815 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FJK4
PFAMsTPR_1,TPR_11,TPR_16,TPR_19,TPR_2,TPR_8
Model size612
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue5.04e-06
EggNOG OGsCOG3914@1|root,KOG4626@2759|Eukaryota
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Ec32 orthologEc-04_006440.1
Descriptionprotein N-acetylglucosaminyltransferase activity
Cds size612
COG categoryO
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790030.5329695-CDS-C-tenellus_contig734:1057..12701680790030.5329695-CDS-C-tenellus_contig734:1057..1270Choristocarpus tenellus KU2346CDSC-tenellus_contig734 1058..1270 +
1680790030.5470135-CDS-C-tenellus_contig734:1416..18151680790030.5470135-CDS-C-tenellus_contig734:1416..1815Choristocarpus tenellus KU2346CDSC-tenellus_contig734 1417..1815 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig734.3.1prot_C-tenellus_contig734.3.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig734 1058..1815 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig734.3.1

>prot_C-tenellus_contig734.3.1 ID=prot_C-tenellus_contig734.3.1|Name=mRNA_C-tenellus_contig734.3.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=204bp
FRTPWRQAPQNAGHHHNIAPLLLAQGDVKGAIHHYRRAIELNPHCNSSKN
DLAVILWKKGKWEAALAALRQVIMVNPNHFEGHLNLCAVYHSKAHLELAA
KHARKAVHLNPSDPRGHRALGQVLDEMGNSTESLHHRKIAVRRGPSVQGV
YQREDTSVFRLLAVQLMACGGPERPHSHAFMDSYRALSGKAVTLANSVRT
EEIL
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mRNA from alignment at C-tenellus_contig734:1058..1815+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig734.3.1 ID=mRNA_C-tenellus_contig734.3.1|Name=mRNA_C-tenellus_contig734.3.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=758bp|location=Sequence derived from alignment at C-tenellus_contig734:1058..1815+ (Choristocarpus tenellus KU2346)
TTTCGCACACCATGGAGACAGGCGCCCCAAAATGCAGGACACCACCACAA
CATTGCTCCACTACTTCTTGCTCAGGGAGATGTTAAAGGTGCTATTCATC
ACTATCGGCGTGCAATAGAACTCAATCCACATTGCAACAGCTCCAAAAAC
GACCTGGCAGTTATTCTATGGAAAAAAGGAAAGTGGGAAGCTGCACTTGC
TGCTCTCCGCCAGGTGACCTTTCTCCATGGGAAAATATCAATAAATGAAA
TGCCCTCCTGGATGGTGTGATATTGAAGCAGGTAGATGAGACAACTATCA
ATTTACAGCATGGCTCAAGTGGATTATGAGAAAGTACCTGTTATCTTCAC
CCCTTTAAGGTGATCATGGTGAACCCCAACCACTTCGAAGGGCACCTCAA
TCTTTGTGCGGTTTACCATTCCAAGGCGCACCTTGAATTGGCTGCGAAGC
ATGCAAGGAAGGCTGTGCACCTCAATCCATCAGACCCAAGGGGCCATAGG
GCACTCGGGCAGGTGCTAGATGAAATGGGAAACTCCACGGAATCACTGCA
TCACCGAAAGATTGCAGTGAGGAGGGGGCCCAGTGTGCAGGGAGTGTATC
AGAGAGAAGATACCAGTGTATTCAGGCTCCTTGCTGTACAACTCATGGCT
TGTGGTGGACCTGAACGTCCACACAGTCATGCTTTCATGGATTCATACCG
GGCTCTCTCAGGCAAGGCTGTTACACTGGCCAATTCAGTGAGGACAGAGG
AGATACTG
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Coding sequence (CDS) from alignment at C-tenellus_contig734:1058..1815+

>mRNA_C-tenellus_contig734.3.1 ID=mRNA_C-tenellus_contig734.3.1|Name=mRNA_C-tenellus_contig734.3.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=612bp|location=Sequence derived from alignment at C-tenellus_contig734:1058..1815+ (Choristocarpus tenellus KU2346)
TTTCGCACACCATGGAGACAGGCGCCCCAAAATGCAGGACACCACCACAA
CATTGCTCCACTACTTCTTGCTCAGGGAGATGTTAAAGGTGCTATTCATC
ACTATCGGCGTGCAATAGAACTCAATCCACATTGCAACAGCTCCAAAAAC
GACCTGGCAGTTATTCTATGGAAAAAAGGAAAGTGGGAAGCTGCACTTGC
TGCTCTCCGCCAGGTGATCATGGTGAACCCCAACCACTTCGAAGGGCACC
TCAATCTTTGTGCGGTTTACCATTCCAAGGCGCACCTTGAATTGGCTGCG
AAGCATGCAAGGAAGGCTGTGCACCTCAATCCATCAGACCCAAGGGGCCA
TAGGGCACTCGGGCAGGTGCTAGATGAAATGGGAAACTCCACGGAATCAC
TGCATCACCGAAAGATTGCAGTGAGGAGGGGGCCCAGTGTGCAGGGAGTG
TATCAGAGAGAAGATACCAGTGTATTCAGGCTCCTTGCTGTACAACTCAT
GGCTTGTGGTGGACCTGAACGTCCACACAGTCATGCTTTCATGGATTCAT
ACCGGGCTCTCTCAGGCAAGGCTGTTACACTGGCCAATTCAGTGAGGACA
GAGGAGATACTG
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