mRNA_C-tenellus_contig7334.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7334.2.1
Unique NamemRNA_C-tenellus_contig7334.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig7334.2.1 vs. uniprot
Match: D7FMW8_ECTSI (Inositol triphosphate receptor (IP3R)/ Ryanodine receptor like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMW8_ECTSI)

HSP 1 Score: 166 bits (421), Expect = 8.320e-45
Identity = 90/151 (59.60%), Postives = 110/151 (72.85%), Query Frame = 1 
Query:   13 VGQRVLLLALSEEPDKPPLGYLSSRLLADASDRSSYLPSRCNLDCALSPARTGGDDD-VLEPLVVSDCVFRVEACLDRHESARANLAHRQLEADATNNLGRHPGTRVRYSKMVQLVHEGSDAMVCLDVRERSDGEGFAMRVVLKTFDLPAG 462
            VG+RVLLLALSEE DK PLGYLSSRLL DA  RSS+      LDC+L+  R     +   EP+VVSDCVFRV AC+DRH++ RA+ + R LE   T + G  PGT VRYSK VQLVHE S A++C+DV+ER++ EGFAM+VVLK  D P+G
Sbjct:    4 VGERVLLLALSEERDKHPLGYLSSRLLMDAEGRSSF----ATLDCSLTSFRDAPPAERSWEPVVVSDCVFRVAACVDRHDATRASQSQRNLEPGNTVHRGMQPGTPVRYSKAVQLVHEFSGALLCIDVQERAESEGFAMKVVLKAIDPPSG 150
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BLAST of mRNA_C-tenellus_contig7334.2.1 vs. uniprot
Match: A0A6H5KRP3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRP3_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 4.840e-10
Identity = 31/48 (64.58%), Postives = 40/48 (83.33%), Query Frame = 1 
Query:  319 GTRVRYSKMVQLVHEGSDAMVCLDVRERSDGEGFAMRVVLKTFDLPAG 462
            GT VRYSK VQLVHE S A++C+DV++R++ EGFAM+VVLK  D P+G
Sbjct:   11 GTPVRYSKAVQLVHEFSGALLCIDVQKRAEREGFAMKVVLKAIDPPSG 58
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7334.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FMW8_ECTSI8.320e-4559.60Inositol triphosphate receptor (IP3R)/ Ryanodine r... [more]
A0A6H5KRP3_9PHAE4.840e-1064.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7334contigC-tenellus_contig7334:2183..6726 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FMW8
Preferred nameRYR1
PFAMsAnk_2,EF-hand_8,Ins145_P3_rec,Ion_trans,MIR,RIH_assoc,RR_TM4-6,RYDR_ITPR,RyR,SPRY
Model size462
Max annot lvl2759|Eukaryota
KEGG koko:K04958,ko:K04960,ko:K04961,ko:K04962,ko:K04963
KEGG TC1.A.3.1,1.A.3.1.2,1.A.3.2
KEGG Pathwayko04020,ko04022,ko04024,ko04070,ko04114,ko04140,ko04210,ko04218,ko04260,ko04261,ko04270,ko04371,ko04540,ko04611,ko04621,ko04713,ko04720,ko04723,ko04724,ko04725,ko04726,ko04728,ko04730,ko04742,ko04745,ko04750,ko04911,ko04912,ko04915,ko04918,ko04921,ko04922,ko04924,ko04925,ko04927,ko04934,ko04970,ko04971,ko04972,ko05010,ko05016,ko05167,ko05205,ko05410,ko05412,ko05414,map04020,map04022,map04024,map04070,map04114,map04140,map04210,map04218,map04260,map04261,map04270,map04371,map04540,map04611,map04621,map04713,map04720,map04723,map04724,map04725,map04726,map04728,map04730,map04742,map04745,map04750,map04911,map04912,map04915,map04918,map04921,map04922,map04924,map04925,map04927,map04934,map04970,map04971,map04972,map05010,map05016,map05167,map05205,map05410,map05412,map05414
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.36e-45
EggNOG OGsKOG3533@1|root,KOG3533@2759|Eukaryota
Descriptioninositol 1,4,5-trisphosphate-sensitive calcium-release channel activity
Cds size462
COG categoryS
BRITEko00000,ko00001,ko01009,ko04040,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790029.9876697-CDS-C-tenellus_contig7334:2182..22881680790029.9876697-CDS-C-tenellus_contig7334:2182..2288Choristocarpus tenellus KU2346CDSC-tenellus_contig7334 2183..2288 +
1680790030.0004365-CDS-C-tenellus_contig7334:3109..33211680790030.0004365-CDS-C-tenellus_contig7334:3109..3321Choristocarpus tenellus KU2346CDSC-tenellus_contig7334 3110..3321 +
1680790030.0098183-CDS-C-tenellus_contig7334:6582..67261680790030.0098183-CDS-C-tenellus_contig7334:6582..6726Choristocarpus tenellus KU2346CDSC-tenellus_contig7334 6583..6726 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7334.2.1prot_C-tenellus_contig7334.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7334 2183..6726 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7334.2.1

>prot_C-tenellus_contig7334.2.1 ID=prot_C-tenellus_contig7334.2.1|Name=mRNA_C-tenellus_contig7334.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=154bp
MALCVGQRVLLLALSEEPDKPPLGYLSSRLLADASDRSSYLPSRCNLDCA
LSPARTGGDDDVLEPLVVSDCVFRVEACLDRHESARANLAHRQLEADATN
NLGRHPGTRVRYSKMVQLVHEGSDAMVCLDVRERSDGEGFAMRVVLKTFD
LPAG
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mRNA from alignment at C-tenellus_contig7334:2183..6726+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7334.2.1 ID=mRNA_C-tenellus_contig7334.2.1|Name=mRNA_C-tenellus_contig7334.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=4544bp|location=Sequence derived from alignment at C-tenellus_contig7334:2183..6726+ (Choristocarpus tenellus KU2346)
ATGGCACTTTGCGTGGGCCAGCGAGTGCTTCTGCTGGCCCTTAGTGAGGA
GCCGGACAAACCACCCCTTGGTTATCTAAGCTCGAGGTTGTTGGCAGATG
CCTCTGGTGAGCGAGAATATTGATGCCCTATACAAGAGGTTTCTAGATCA
CTAGCACGTTGGTCGTCGTAAAGTACAAAATTCTTTGCTGCAAATCACAT
TGCAAAACAGACTGTAAAACATGGCTTGTGGCTTGTGTCAACCAGTCCGA
ACGTTGATGATATTTGTGCCGAGTTGATCACTATGGAATAAAGTACTTCG
CAAATGGTGTATATGATTCGATTGTGCATGCCTGCGATCTTTCATGCGTG
CGAGGAGGGTGACAACCATGGAAAAAAATTCCATACGAAGAGCATCAAAT
AACATGGTCACCACAAGTTCACATGCATTCACGTGCGAAGTAGTGGAGTA
GTGTGGAATATGCAAGTATGTCTCGAAGTGTGCCCACCTCGCATGTCTCG
CCTTCCAAATTGCTTTACATCAACGCTTGAAGGGATAAGAACATAAAAAA
AACATGTAGATTCCTCAACTATCTTCCCGTAGCTGTCTAATGACTGAATG
CAAAATACGATGCTAACTAGTCAACGCGGATATATACTTGGGTCACACCA
TAGTGAAGTGATATCAGGGTCACGGTTTTGCAAAATGTATAGCAGTTGGC
TATACCAGCTTGCCCCTGGTATAGCTTGAGGTTTGCAGATAGAAAAATCC
TCTGTTGTGATGCTCTACCGTGAACACTTGGGAATTGGGGGACGCAAAAC
GCCAAGTTCAGTAAGCAGCCAGCCTATTTTTTTTAATGCTTGTAGTAACG
ACAATTACATAACGTCCCTCTCTCCTGCCCATGAAATTTGTGCGTACCCC
CTCCTCCCCCTCGCCCCTGCACACAAGACCGCTCGTCGTACCTTCCCTCA
CGTTGCAACCTGGACTGCGCCCTGTCACCGGCTCGCACTGGAGGAGATGA
TGACGTTCTAGAGCCGCTGGTTGTTTCAGACTGTGTATTTCGGGTAGAGG
CGTGCCTGGACAGGCATGAATCAGCCAGGGCTAACCTTGCCCACCGACAG
CTGGAAGCCGATGCGACTAACAACCTTGGAAGGCACCCAGTGAGTTAGAA
TTGACATTTGGGTTGAATGGGGCAGGGAGGGCAACGGGGGAAAGGGGCTA
TTAACAGGAAAGTACGTTGAATAGAAGATTTTTTTTCATTTGTAAACCAG
CGGCTTGCCCATCCCTCTCTCCCTGCTTTAGAGTTCTCCACCATTAGGAA
CCATCCTCTTTGTGTCAAGATTAAGCCTTAGGTAAGTGGTGTCCTGCGTA
GCAAATACTACTCACTTCTTGGCACTAGCCCTAACCCTATTGCTAGTGCA
CTTTACAGTTTCTATTTAGAAAAAAATGTGCTCTTTATCTTTGCTCAGGA
TTTTCACGTGTTCCACGTGTGTTTCTCTTAAGAAGTATTACGGAACGGTT
ATTCCTCACACTGTCATTTATAGACTTTTGGTCATGAATTTCCTAATTAT
CCCGAAAGAGACCTTTTGTACATTGTGGGTAGTCAATTAGTTTGATTCGA
TCGATTAAAGAACATTAGATTTAGTCAGTTACAGGATTGAATAAGTTGGA
TTAGTCAGTTACCCTTAGTCTTCTTTTTTGGACTCTTTCTAGGTTCAAGA
CCCCAGACACCAACACAACCACGCACAGAAATGCCTTGCCTGTGATGCAG
AGCGTTCCCACTGTGCTGTGAGTGTCCCTGGGGACTCCCTCTGTTGTATT
TTAGGACATGGGCATGAGTGTCTATTCTCGGCAGTCAGTGTGCTGTCGGT
TGAGTGCTTTTTGACATGAAGAGACGATAATGACAAGAAGAAGCCAGAGG
CCGAGGTGAAGACCCAAGGTGAAGGTCACCACTAGGATGGAGCAAGAATA
GAACGTCTGGGAGTAGACAGCAGTGAAATCCTACAGGTTGACTGTGCCTA
TTTGGTTCTATTTCATTCTGTACATATGGGGGGAAGGTAACCCAAAGTGG
CCGATTTTGATTCACACTTCACTAATTCGGAGAGGTTGCAACCCTGCCTG
AAGAGAGACAAGACGAGTGAGTTGGTGGGGACTATGGGGGAGTTCAGTTG
CTGATGGCGATGTACTTGTGGGAATCACAGCCAGAAAGTGCATTCAACAG
CAGGCAGCACACGCGGGAAGGTTTATGCCTTTGGGAGGGAGATTAATTGT
GCTTAAGCGTGACCAGTGAGATTGGGCATCGCAACGACCTGCTCAAGCTG
TAGTATGCAATGACTCTTAAGTCACATGCTTGGTCAAACTTGACTTGTAA
CGTTCCAGTCGTTCCTGTGACACCGATAGACTCTACACGTCCATGTTCTC
AACATCTTGGAGAGTTCACAACCCCTGCCCGATCGAGAACGAACCCGTTG
AATGTACAAGCCGCTGGTGCATTCTTGTGAATGTTGGATTCAAGAGGTGG
ACAGACGGAAGGCTGCGAGCAGAAAGAAATTGATGTCATTCGTAGACCAG
AGTGGATCAGTCACAGCACCAGCGTGTACTGTTACCTAGTAGGTAAAACA
ACTGTGGGTAGCATTATGGTAGGGGCCATGCACATTAGTATTGACACTAC
GCATGTACCGTTGACGTTCCTCTTGCCACCTCCTGGGTCTGTCCCTCTTG
AGCGAGCCTACCATGTCAGAGGTGCAGGTGAGAGCAAGTTCTAGACTGCC
GCAGTAGTTGTACTCTCAGTTCACGGGTGAATGTGTGTCCTGCGCTTGTT
TCCTGTGGCGGGGTGCAGTCTGGAGGGTGACATTTTTTGAGGGTACACTA
GCCCTAACTCTTAAAAGTCGACCTTTGCCACTTCGATTGAACGGTTTACA
TTTTTTTTTTCTGAGGCGTTTGTTTGCCTCATTTAAAAAAAAAAAAAAAT
GAAATTTGATTTCTTCAGGTGACAACGATGTGTATTGTTTGCTACGTACA
CGTACACGGATAGGGCCGTGTACGAATTGCTCTCGAGTCGAAATTCGTCG
AAGTGGTGTTTTAGTTTTTTTTAATTTTTTTTTTAATTTTAATTTTTTTT
TAATGTATCCGGCAATGAGAACAGAATAGGAACAGAATAGGAACATAATC
CCATGGTTGCGCCGGATCTATCCGAGAACAGGTTGCTCTACGGCTCTGAT
AGTTGGTTGCAGTCGGTTAGGGATGGTTGGATGGTAGGTGGGACTGGGGG
TGATGGCCGATGAATGGAGTGAGAGGTGGAGCACCCCAGTCTTTATTCTG
TGTAGATAACTGAGATTCGACTGTACCACCAAGGCAGCAAGCATTGCCGC
AAACAAACAATGCCTTCACAACGATTCGTAATCTTTTGTTTTGAGTATGT
TTTCTTAACCTTGCAAGGCGTGACGCGTGCGTGTATTTTTTTTTTACTTT
GTACGTACTACATACGTCTGGAGCATCTTATTGTTTGGTTTTATTTTAGT
ATCGTGTGTACGTGCCATGGCTGCTATCGCTCGCGGCAGGTGTACCTTGA
GCTGTCATGAACAATAACAAAGAAGAGAGTATACTTTGATGAAGCGAAAA
ACCCTGATTATTGCTGATTCGTGTTTTTGATTAATTTTTGACCGATTATT
ACTGAGATTGATTTTACTCCCAAAGGGTGGGCTTATTTGGGGCAGGATGG
GCAGGGCTGTTTGTGTGTACAATTGTAGGTTGGTAGCATTCGTTGCTGGT
GCAGTACAACCATAGTTGGCAAAGCACGCCATCCATGTCTGGAGTTGGTT
GTTGGCCTGGTGGTATGAATATAGCATTAGATGGAGTGACAATAGTGACG
AACACATTTGATTTGACGTCATTGTCAGTTTGGCACACCAGTCCATACCA
GTCCATTTCGGAATTGTTCATTTGAGAGGTTGTGTTTGAGAGGTTGGATT
TCTTGGTGGCTGATCGATGAATGGTTTGGTGGATGAGTAGATTGATGGGT
GAATACATTGATAGGTGAATACATTGATGGGTGAATAGATGGATGGATGA
ATACATTGATGGGTGAATAGATGGATGGGTGAATAGATGGATCGATGAAT
GGTTTGATGGATGAGTAGATTGATGGGTGAATACATTGATGGGTGAGTAC
ATTGATGGGTGAATACATTGATGAATGAATAGATGGATGAATACATTGAT
GGGTGAATACATGGATGAATGAATAGATTAATGGGTGAATAGATTGATGA
ATGAATAGATGGATGGATGAATAGATTGATGGGTGAATACATTGATGGAT
GAATACATTGATGGATGAATAGATCGATGGGTGAATATATTGATCGATGA
CGACCTTCGGAGTGTAAAGCAAAACCGCGACATGCATGTGTTCTGCCCAG
GGCACCCGGGTCCGCTATTCCAAGATGGTGCAGTTGGTGCATGAGGGGAG
TGATGCCATGGTGTGCTTGGATGTACGGGAACGCTCAGACGGAGAGGGAT
TCGCAATGAGAGTTGTTCTCAAGACCTTTGACTTGCCTGCAGGT
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Coding sequence (CDS) from alignment at C-tenellus_contig7334:2183..6726+

>mRNA_C-tenellus_contig7334.2.1 ID=mRNA_C-tenellus_contig7334.2.1|Name=mRNA_C-tenellus_contig7334.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=462bp|location=Sequence derived from alignment at C-tenellus_contig7334:2183..6726+ (Choristocarpus tenellus KU2346)
ATGGCACTTTGCGTGGGCCAGCGAGTGCTTCTGCTGGCCCTTAGTGAGGA
GCCGGACAAACCACCCCTTGGTTATCTAAGCTCGAGGTTGTTGGCAGATG
CCTCTGACCGCTCGTCGTACCTTCCCTCACGTTGCAACCTGGACTGCGCC
CTGTCACCGGCTCGCACTGGAGGAGATGATGACGTTCTAGAGCCGCTGGT
TGTTTCAGACTGTGTATTTCGGGTAGAGGCGTGCCTGGACAGGCATGAAT
CAGCCAGGGCTAACCTTGCCCACCGACAGCTGGAAGCCGATGCGACTAAC
AACCTTGGAAGGCACCCAGGCACCCGGGTCCGCTATTCCAAGATGGTGCA
GTTGGTGCATGAGGGGAGTGATGCCATGGTGTGCTTGGATGTACGGGAAC
GCTCAGACGGAGAGGGATTCGCAATGAGAGTTGTTCTCAAGACCTTTGAC
TTGCCTGCAGGT
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