mRNA_C-tenellus_contig7327.3.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7327.3.1
Unique NamemRNA_C-tenellus_contig7327.3.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7327.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7327contigC-tenellus_contig7327:4023..5592 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1570
Hectar predicted targeting categorysignal peptide
Exons1
Cds size1491
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790029.170161-UTR-C-tenellus_contig7327:4022..41011680790029.170161-UTR-C-tenellus_contig7327:4022..4101Choristocarpus tenellus KU2346UTRC-tenellus_contig7327 4023..4101 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790029.1797593-CDS-C-tenellus_contig7327:4101..55921680790029.1797593-CDS-C-tenellus_contig7327:4101..5592Choristocarpus tenellus KU2346CDSC-tenellus_contig7327 4102..5592 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7327.3.1prot_C-tenellus_contig7327.3.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7327 4102..5592 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7327.3.1

>prot_C-tenellus_contig7327.3.1 ID=prot_C-tenellus_contig7327.3.1|Name=mRNA_C-tenellus_contig7327.3.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=497bp
MGARRRRAPVGVLALATLTSRGHGSRFSAAFIARLTSTYWGSSRRRELRT
SAHKVTPEAPHRSMTTSIRLPVFMGDDSAGLGSEEDTDGSPSVAGIHGDN
NRIKDLGKGFSPRDAVEDKKDNGLLTARQEEHLRKLPRSAWDDLDAEEGF
SMIAAKLQEKGQIATGGGPLTPRRKLTREEWKEVRNYQCLCDDRVLGYAK
KGRWKDALVVLQEEKTAGRIISPRAFNTALRAVGTAGLVRPAIILINEIR
KVGLDVTVYNYGAALNACAKAGAASAALMLLDEMRLDGIQPNEIVYTSAI
KACGPGGHWREVLGLLERMEDEGTSPNGKHYNAAISVLGSVGRYREAMRL
LAQRDDRGIKRCTFTYVAAIDAAGKGGEANVALALLNEMLRDGLELNLMA
LNTTIFACAHAREPSQKIARAVADLLDMAFRGGVEVDHRTYSGAMMAMAQ
AGQVHKALGLLDVSSKPPNAHMYSSALTACRYARVEDLLPIAGVGKG
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mRNA from alignment at C-tenellus_contig7327:4023..5592+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7327.3.1 ID=mRNA_C-tenellus_contig7327.3.1|Name=mRNA_C-tenellus_contig7327.3.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1570bp|location=Sequence derived from alignment at C-tenellus_contig7327:4023..5592+ (Choristocarpus tenellus KU2346)
GGTAGAAGTGTCGGAGAGCAGGACAATGTGTCGACATTGAGGGAGTCAAG
TGGATGTGATACCTGAAGTAGTGGAAAGGATGGGGGCGAGAAGAAGGCGA
GCGCCAGTGGGGGTACTGGCGCTAGCCACTCTCACCTCCAGGGGACATGG
AAGTCGATTTTCGGCAGCATTCATTGCTCGTTTGACCTCCACGTATTGGG
GTTCATCCCGTAGGCGAGAACTGCGGACGTCCGCTCACAAGGTCACTCCT
GAGGCCCCACATCGGAGCATGACAACTTCTATCCGCCTGCCTGTATTTAT
GGGTGATGACAGCGCTGGTTTGGGCTCTGAAGAAGATACGGATGGCAGTC
CAAGCGTGGCTGGTATTCATGGCGATAACAACCGTATCAAAGACCTCGGG
AAGGGATTTTCCCCACGGGACGCTGTCGAAGACAAGAAGGATAATGGGTT
GCTAACTGCTCGACAAGAGGAACACTTACGCAAGTTGCCACGGTCTGCCT
GGGACGATCTAGATGCGGAGGAAGGGTTTAGCATGATTGCTGCCAAACTC
CAAGAGAAAGGACAGATTGCGACTGGTGGCGGTCCTTTGACTCCCCGACG
CAAGCTGACGCGTGAGGAATGGAAGGAAGTGCGCAACTACCAGTGTTTGT
GCGATGATCGTGTCTTGGGTTATGCGAAGAAGGGGCGTTGGAAAGATGCC
CTTGTCGTGCTCCAAGAGGAAAAGACAGCAGGTCGGATAATATCACCTCG
GGCGTTCAACACAGCACTTCGTGCGGTAGGCACGGCTGGATTGGTACGAC
CTGCAATCATTCTTATCAATGAGATACGCAAAGTGGGCTTAGATGTGACG
GTGTACAATTACGGTGCAGCTCTCAATGCCTGTGCCAAGGCAGGGGCCGC
CAGTGCGGCCCTTATGCTCCTCGATGAGATGAGACTTGACGGGATTCAGC
CGAACGAAATAGTTTACACCTCGGCCATCAAAGCTTGTGGACCTGGGGGG
CACTGGCGAGAGGTTCTGGGCTTGCTCGAGCGCATGGAGGATGAGGGCAC
GTCACCTAATGGAAAACACTACAACGCAGCCATCAGTGTCCTGGGCAGTG
TCGGTCGGTATAGGGAAGCCATGCGCCTCCTGGCGCAGCGTGACGATCGG
GGCATCAAACGTTGTACTTTTACGTATGTTGCAGCAATTGATGCCGCAGG
CAAGGGTGGTGAAGCCAACGTCGCCCTGGCACTCCTCAATGAGATGCTGA
GAGATGGGCTGGAACTAAATCTCATGGCCCTCAACACTACAATATTCGCG
TGCGCACATGCGAGGGAGCCAAGTCAGAAAATCGCTCGAGCGGTGGCAGA
CTTGCTGGATATGGCTTTCAGGGGAGGTGTTGAGGTAGACCACAGAACGT
ACTCTGGAGCCATGATGGCCATGGCACAGGCAGGGCAGGTACACAAGGCT
CTGGGTCTACTGGACGTTTCAAGTAAGCCCCCAAATGCCCACATGTACAG
TTCAGCTCTTACTGCGTGCCGCTATGCTCGTGTGGAGGATTTATTGCCCA
TAGCAGGGGTGGGGAAGGGG
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Coding sequence (CDS) from alignment at C-tenellus_contig7327:4023..5592+

>mRNA_C-tenellus_contig7327.3.1 ID=mRNA_C-tenellus_contig7327.3.1|Name=mRNA_C-tenellus_contig7327.3.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=1491bp|location=Sequence derived from alignment at C-tenellus_contig7327:4023..5592+ (Choristocarpus tenellus KU2346)
ATGGGGGCGAGAAGAAGGCGAGCGCCAGTGGGGGTACTGGCGCTAGCCAC
TCTCACCTCCAGGGGACATGGAAGTCGATTTTCGGCAGCATTCATTGCTC
GTTTGACCTCCACGTATTGGGGTTCATCCCGTAGGCGAGAACTGCGGACG
TCCGCTCACAAGGTCACTCCTGAGGCCCCACATCGGAGCATGACAACTTC
TATCCGCCTGCCTGTATTTATGGGTGATGACAGCGCTGGTTTGGGCTCTG
AAGAAGATACGGATGGCAGTCCAAGCGTGGCTGGTATTCATGGCGATAAC
AACCGTATCAAAGACCTCGGGAAGGGATTTTCCCCACGGGACGCTGTCGA
AGACAAGAAGGATAATGGGTTGCTAACTGCTCGACAAGAGGAACACTTAC
GCAAGTTGCCACGGTCTGCCTGGGACGATCTAGATGCGGAGGAAGGGTTT
AGCATGATTGCTGCCAAACTCCAAGAGAAAGGACAGATTGCGACTGGTGG
CGGTCCTTTGACTCCCCGACGCAAGCTGACGCGTGAGGAATGGAAGGAAG
TGCGCAACTACCAGTGTTTGTGCGATGATCGTGTCTTGGGTTATGCGAAG
AAGGGGCGTTGGAAAGATGCCCTTGTCGTGCTCCAAGAGGAAAAGACAGC
AGGTCGGATAATATCACCTCGGGCGTTCAACACAGCACTTCGTGCGGTAG
GCACGGCTGGATTGGTACGACCTGCAATCATTCTTATCAATGAGATACGC
AAAGTGGGCTTAGATGTGACGGTGTACAATTACGGTGCAGCTCTCAATGC
CTGTGCCAAGGCAGGGGCCGCCAGTGCGGCCCTTATGCTCCTCGATGAGA
TGAGACTTGACGGGATTCAGCCGAACGAAATAGTTTACACCTCGGCCATC
AAAGCTTGTGGACCTGGGGGGCACTGGCGAGAGGTTCTGGGCTTGCTCGA
GCGCATGGAGGATGAGGGCACGTCACCTAATGGAAAACACTACAACGCAG
CCATCAGTGTCCTGGGCAGTGTCGGTCGGTATAGGGAAGCCATGCGCCTC
CTGGCGCAGCGTGACGATCGGGGCATCAAACGTTGTACTTTTACGTATGT
TGCAGCAATTGATGCCGCAGGCAAGGGTGGTGAAGCCAACGTCGCCCTGG
CACTCCTCAATGAGATGCTGAGAGATGGGCTGGAACTAAATCTCATGGCC
CTCAACACTACAATATTCGCGTGCGCACATGCGAGGGAGCCAAGTCAGAA
AATCGCTCGAGCGGTGGCAGACTTGCTGGATATGGCTTTCAGGGGAGGTG
TTGAGGTAGACCACAGAACGTACTCTGGAGCCATGATGGCCATGGCACAG
GCAGGGCAGGTACACAAGGCTCTGGGTCTACTGGACGTTTCAAGTAAGCC
CCCAAATGCCCACATGTACAGTTCAGCTCTTACTGCGTGCCGCTATGCTC
GTGTGGAGGATTTATTGCCCATAGCAGGGGTGGGGAAGGGG
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