mRNA_C-tenellus_contig7317.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7317.1.1
Unique NamemRNA_C-tenellus_contig7317.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig7317.1.1 vs. uniprot
Match: A0A6H5KV72_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV72_9PHAE)

HSP 1 Score: 134 bits (336), Expect = 5.860e-32
Identity = 105/274 (38.32%), Postives = 129/274 (47.08%), Query Frame = 1 
Query:   82 ECLWWATRDGSHVAIVGGYDGQVHFVDLEHMNVWTMAPPGPSTPRGAVASLTIAT-LARSNAETIPQQSPPPPQTP-----------------------------------PHT-LPRHLVVVLDQGAVFIILLERG----------------VATVDKGS----DGAAGGDGVVVNGGGGPDEGRK------GMVETEYVRLRADCSGDLDFAPAWLDVGRGGGGSGGE-FGVRVVSQA-PGGDGGGGEG--LHISVVSRAWGNKCTVKVLRL 702
            ECLWW TR G+H A++G  DG+VHF+DLE ++ W +APP PS  RG V +L I T LA ++         PPP+                                      HT LPRHLV VL  GAVFI+LLERG                     KG     DG +  D +    G G D          G +  +YV L AD +    F+P WLDVGRGG        GVRV+    P GDGG G    L +S+VSRAWGNKC VK+LR+
Sbjct:  298 ECLWWVTRSGNHFAVIGDPDGEVHFLDLEGLDAWVIAPPLPSMARGRVCALDIVTDLAGTSGA-------PPPRAQRTGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSHTSLPRHLVAVLHTGAVFIVLLERGHPDDGVGDXXXXXXXXAKNAVKGEAGEEDGKSSCDHIGKVDGHGRDSSSSSSSNSPGCLGQQYVCLGADTADQPAFSPVWLDVGRGGXXXXXXXMGVRVIPPLYPPGDGGXGSSIRLRMSIVSRAWGNKCAVKILRV 564
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7317.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KV72_9PHAE5.860e-3238.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7317contigC-tenellus_contig7317:12..1850 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size753
Hectar predicted targeting categoryother localisation
Exons2
Cds size753
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790028.4877756-CDS-C-tenellus_contig7317:11..6171680790028.4877756-CDS-C-tenellus_contig7317:11..617Choristocarpus tenellus KU2346CDSC-tenellus_contig7317 12..617 -
1680790028.4990265-CDS-C-tenellus_contig7317:1703..18501680790028.4990265-CDS-C-tenellus_contig7317:1703..1850Choristocarpus tenellus KU2346CDSC-tenellus_contig7317 1704..1850 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7317.1.1prot_C-tenellus_contig7317.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7317 12..1850 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7317.1.1

>prot_C-tenellus_contig7317.1.1 ID=prot_C-tenellus_contig7317.1.1|Name=mRNA_C-tenellus_contig7317.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=251bp
GGRGKGAEGGGGKGPRSRKESLTQGRVECLWWATRDGSHVAIVGGYDGQV
HFVDLEHMNVWTMAPPGPSTPRGAVASLTIATLARSNAETIPQQSPPPPQ
TPPHTLPRHLVVVLDQGAVFIILLERGVATVDKGSDGAAGGDGVVVNGGG
GPDEGRKGMVETEYVRLRADCSGDLDFAPAWLDVGRGGGGSGGEFGVRVV
SQAPGGDGGGGEGLHISVVSRAWGNKCTVKVLRLEARTAAAVVAAGAVSA
G
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mRNA from alignment at C-tenellus_contig7317:12..1850-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7317.1.1 ID=mRNA_C-tenellus_contig7317.1.1|Name=mRNA_C-tenellus_contig7317.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1839bp|location=Sequence derived from alignment at C-tenellus_contig7317:12..1850- (Choristocarpus tenellus KU2346)
GGGGGGAGGGGAAAGGGGGCAGAGGGAGGGGGTGGGAAGGGACCCCGTTC
CAGGAAAGAGAGTCTGACTCAAGGCCGAGTGGAGTGCCTGTGGTGGGCCA
CCAGGGACGGTAGCCATGTGGCCATTGTGGGCGGATATGATGGGCAGGTG
GGTGAGAGATGTCCCATTTTTGACCTCAACTGTCTTGAGTTGCACTTCCT
GGCTTCTCTGTGTTGCTCTATGACTTGAGCTCCTTGGCACTGGTCATTGG
GAAACAGAGCACACTTAGTTCGTTCTTCCCACCCTTGAGGCCATGTTTCT
TTTAATGCCTCACCAACCTTCCCTTACAACATTTTTAGTTTTGTTATGGC
GGTACATAAGTTTGTTGATGCCCCTACCCACACACTCTTCAATACCCCTC
TCTTAGCAGTTGAATGCAAGTTGCAAGGCAAGCAACTTTAATGTCTGGAA
ATGCCAGGCTGCAGGCCAGTCAAGTAGGCTTTGGTATGACAAAGAGAGTT
AGCTTGGAAATACCACAGTGGGATCAGCAATCTCAACCTTCCCTTTCTTG
GAGCGGTTCATTTTTTTTCCTTAGCATTGTTAACTCCAAGCTTGCTATTG
TGGAATTGTGTTGAGGGATTGGACATGTGTGCTAGTCGAACATGTCAGTG
GATGGAAAATTCTGTATCGGAGAGTACCTGTGGATCTACTGCAAGTTGTA
CTGCACTTGCTGAGTATGGAATTTTTGTAGGACAGTGACCAAGGAATTGA
GATGCTAAAGAATATTTTTGGGCAACACAGAAATTCAAGCAGGTGAGGAA
TTTGATATCTTCCCTTTTACAATATGCTTAGGACACATGCATATGCCCCA
CAGAAACTCTTCACGTATAAATATTTACTGTTTTTGAGGAAGTGCTGGAG
GTAGTGTTCTTAGGAATTGAGAGTTTTGTAGAGTATTTTTGGGTTTTGGT
GCTGACACTTTGACAGCATCCTTGCACATATACCGAGATGTTCGTAAAAG
GATTACTTATTTTCCTAAAATATTAAGAGTCGGAAGCCCATGAACTCTCA
TCAAGGAGAGTAAAAGTGTGTTCATCCAAACATGTAGAGAAATCACATTC
TTAACTAGTATTCTTGCACGACTTCTGCCAAAACCTTAAAAAAACTTTCA
AAGCATACAAATCTCTAACAGCCACCCCACCCCCCTCCTCTCTTCCTTGT
CCTTCCCTTTCAACCCAACCCTACATGGAGTAGGTACACTTTGTTGACCT
CGAGCACATGAATGTCTGGACAATGGCACCACCTGGACCATCAACTCCTA
GGGGTGCTGTGGCATCCCTCACCATCGCTACCCTTGCCAGATCCAACGCT
GAAACAATCCCCCAGCAGTCACCTCCCCCCCCACAAACACCTCCCCACAC
CCTGCCCCGCCACCTAGTTGTTGTTCTTGACCAAGGTGCCGTTTTCATCA
TCCTGCTGGAACGTGGAGTCGCCACGGTTGACAAAGGGTCTGATGGGGCT
GCTGGTGGAGATGGGGTTGTGGTTAATGGAGGGGGTGGTCCCGATGAGGG
TAGAAAAGGTATGGTGGAGACAGAGTATGTACGACTACGCGCAGATTGTA
GTGGGGATCTAGATTTCGCCCCGGCATGGCTTGATGTCGGACGAGGAGGG
GGTGGAAGTGGAGGAGAGTTTGGGGTTAGGGTTGTTTCGCAGGCACCTGG
TGGTGATGGGGGTGGTGGGGAAGGGCTGCACATATCTGTTGTATCTCGGG
CATGGGGGAACAAGTGCACTGTCAAGGTGTTACGCCTTGAAGCAAGGACG
GCAGCTGCTGTGGTAGCAGCTGGTGCAGTTTCAGCAGGG
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Coding sequence (CDS) from alignment at C-tenellus_contig7317:12..1850-

>mRNA_C-tenellus_contig7317.1.1 ID=mRNA_C-tenellus_contig7317.1.1|Name=mRNA_C-tenellus_contig7317.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=753bp|location=Sequence derived from alignment at C-tenellus_contig7317:12..1850- (Choristocarpus tenellus KU2346)
GGGGGGAGGGGAAAGGGGGCAGAGGGAGGGGGTGGGAAGGGACCCCGTTC
CAGGAAAGAGAGTCTGACTCAAGGCCGAGTGGAGTGCCTGTGGTGGGCCA
CCAGGGACGGTAGCCATGTGGCCATTGTGGGCGGATATGATGGGCAGGTA
CACTTTGTTGACCTCGAGCACATGAATGTCTGGACAATGGCACCACCTGG
ACCATCAACTCCTAGGGGTGCTGTGGCATCCCTCACCATCGCTACCCTTG
CCAGATCCAACGCTGAAACAATCCCCCAGCAGTCACCTCCCCCCCCACAA
ACACCTCCCCACACCCTGCCCCGCCACCTAGTTGTTGTTCTTGACCAAGG
TGCCGTTTTCATCATCCTGCTGGAACGTGGAGTCGCCACGGTTGACAAAG
GGTCTGATGGGGCTGCTGGTGGAGATGGGGTTGTGGTTAATGGAGGGGGT
GGTCCCGATGAGGGTAGAAAAGGTATGGTGGAGACAGAGTATGTACGACT
ACGCGCAGATTGTAGTGGGGATCTAGATTTCGCCCCGGCATGGCTTGATG
TCGGACGAGGAGGGGGTGGAAGTGGAGGAGAGTTTGGGGTTAGGGTTGTT
TCGCAGGCACCTGGTGGTGATGGGGGTGGTGGGGAAGGGCTGCACATATC
TGTTGTATCTCGGGCATGGGGGAACAAGTGCACTGTCAAGGTGTTACGCC
TTGAAGCAAGGACGGCAGCTGCTGTGGTAGCAGCTGGTGCAGTTTCAGCA
GGG
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